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Daojun Yuan, Ph.D. - Publications

Affiliations: 
2015-2018 Plant and Wildlife Sciences Brigham Young University, Provo, UT, United States 
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 You J, Liu Z, Qi Z, Ma Y, Sun M, Su L, Niu H, Peng Y, Luo X, Zhu M, Huang Y, Chang X, Hu X, Zhang Y, Pi R, ... ... Yuan D, et al. Regulatory controls of duplicated gene expression during fiber development in allotetraploid cotton. Nature Genetics. PMID 37845354 DOI: 10.1038/s41588-023-01530-8  0.773
2023 Xu Z, Wang G, Luo J, Zhu M, Hu L, Liang S, Li B, Huang X, Wang Y, Zhang G, Zhang C, Zhou Y, Yuan D, Chen T, Chen L, et al. The chromosome-scale reference genome of mirid bugs (Adelphocoris suturalis) genome provides insights into omnivory, insecticide resistance, and survival adaptation. Bmc Biology. 21: 195. PMID 37726763 DOI: 10.1186/s12915-023-01666-3  0.494
2023 Zhang S, Wang J, He W, Kan S, Liao X, Jordan DR, Mace ES, Tao Y, Cruickshank AW, Klein R, Yuan D, Tembrock LR, Wu Z. Variation in mitogenome structural conformation in wild and cultivated lineages of sorghum corresponds with domestication history and plastome evolution. Bmc Plant Biology. 23: 91. PMID 36782130 DOI: 10.1186/s12870-023-04104-2  0.507
2023 Wang N, Li Y, Meng Q, Chen M, Wu M, Zhang R, Xu Z, Sun J, Zhang X, Nie X, Yuan D, Lin Z. Genome and haplotype provide insights into the population differentiation and breeding improvement of Gossypium barbadense. Journal of Advanced Research. PMID 36775017 DOI: 10.1016/j.jare.2023.02.002  0.506
2022 Grover CE, Arick MA, Thrash A, Sharbrough J, Hu G, Yuan D, Snodgrass S, Miller ER, Ramaraj T, Peterson DG, Udall JA, Wendel JF. Dual domestication, diversity, and differential introgression in Old World cotton diploids. Genome Biology and Evolution. PMID 36510772 DOI: 10.1093/gbe/evac170  0.787
2022 Li B, Fu C, Zhou J, Hui F, Wang Q, Wang F, Wang G, Xu Z, Che L, Yuan D, Wang Y, Zhang X, Jin S. Highly Efficient Genome Editing Using Geminivirus-Based CRISPR/Cas9 System in Cotton Plant. Cells. 11. PMID 36139477 DOI: 10.3390/cells11182902  0.498
2021 Grover CE, Yuan D, Arick MA, Miller ER, Hu G, Peterson DG, Wendel JF, Udall JA. The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility. G3 (Bethesda, Md.). PMID 34549783 DOI: 10.1093/g3journal/jkab319  0.829
2021 Song JM, Xie WZ, Wang S, Guo YX, Koo DH, Kudrna D, Gong C, Huang Y, Feng JW, Zhang W, Zhou Y, Zuccolo A, Long E, Lee S, Talag J, ... ... Yuan D, et al. Two Gap-free Reference Genomes and a Global View of the Centromere Architecture in Rice. Molecular Plant. PMID 34171480 DOI: 10.1016/j.molp.2021.06.018  0.833
2021 Yuan D, Grover CE, Hu G, Pan M, Miller ER, Conover JL, Hunt SP, Udall JA, Wendel JF. Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 8: 2003634. PMID 34026441 DOI: 10.1002/advs.202003634  0.789
2021 Zhou J, Zhang S, Wang J, Shen H, Ai B, Gao W, Zhang C, Fei Q, Yuan D, Wu Z, Tembrock LR, Li S, Gu C, Liao X. Chloroplast genomes in Populus (Salicaceae): comparisons from an intensively sampled genus reveal dynamic patterns of evolution. Scientific Reports. 11: 9471. PMID 33947883 DOI: 10.1038/s41598-021-88160-4  0.653
2021 Li J, Yuan D, Wang P, Wang Q, Sun M, Liu Z, Si H, Xu Z, Ma Y, Zhang B, Pei L, Tu L, Zhu L, Chen LL, Lindsey K, et al. Cotton pan-genome retrieves the lost sequences and genes during domestication and selection. Genome Biology. 22: 119. PMID 33892774 DOI: 10.1186/s13059-021-02351-w  0.499
2021 Grover CE, Yuan D, Arick MA, Miller ER, Hu G, Peterson DG, Wendel JF, Udall JA. The Gossypium stocksii genome as a novel resource for cotton improvement. G3 (Bethesda, Md.). PMID 33871013 DOI: 10.1093/g3journal/jkab125  0.8
2021 Ding Y, Zhang R, Zhu L, Wang M, Ma Y, Yuan D, Liu N, Hu H, Min L, Zhang X. An enhanced photosynthesis and carbohydrate metabolic capability contributes to heterosis of the cotton (Gossypium hirsutum) hybrid 'Huaza Mian H318', as revealed by genome-wide gene expression analysis. Bmc Genomics. 22: 277. PMID 33865322 DOI: 10.1186/s12864-021-07580-8  0.384
2020 Li B, Liang S, Alariqi M, Wang F, Wang G, Wang Q, Xu Z, Yu L, Zafar MN, Sun L, Si H, Yuan D, Guo W, Wang Y, Lindsey K, et al. The application of temperature sensitivity CRISPR/LbCpf1 (LbCas12a) mediated genome editing in allotetraploid cotton (G. hirsutum) and creation of nontransgenic, gossypol-free cotton. Plant Biotechnology Journal. PMID 32854160 DOI: 10.1111/Pbi.13470  0.389
2020 Grover CE, Pan M, Yuan D, Arick MA, Hu G, Brase L, Stelly DM, Lu Z, Schmitz RJ, Peterson DG, Wendel JF, Udall JA. The Genome as a Resource for Cotton Breeding and Evolution. G3 (Bethesda, Md.). PMID 32122962 DOI: 10.1534/G3.120.401050  0.821
2019 Grover CE, Yoo MJ, Lin M, Murphy MD, Harker DB, Byers RL, Lipka AE, Hu G, Yuan D, Conover JL, Udall JA, Paterson AH, Gore MA, Wendel JF. Genetic Analysis of the Transition from Wild to Domesticated Cotton ( L.). G3 (Bethesda, Md.). PMID 31843806 DOI: 10.1534/G3.119.400909  0.76
2019 Udall JA, Long E, Ramaraj T, Conover JL, Yuan D, Grover CE, Gong L, Arick MA, Masonbrink RE, Peterson DG, Wendel JF. The Genome Sequence of Illustrates a Descending Dysploidy in Plants. Frontiers in Plant Science. 10: 1541. PMID 31827481 DOI: 10.3389/Fpls.2019.01541  0.799
2019 Bao Y, Hu G, Grover CE, Conover J, Yuan D, Wendel JF. Unraveling cis and trans regulatory evolution during cotton domestication. Nature Communications. 10: 5399. PMID 31776348 DOI: 10.1038/S41467-019-13386-W  0.798
2019 Hu L, Xu Z, Wang M, Fan R, Yuan D, Wu B, Wu H, Qin X, Yan L, Tan L, Sim S, Li W, Saski CA, Daniell H, Wendel JF, et al. The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis. Nature Communications. 10: 4702. PMID 31619678 DOI: 10.1038/S41467-019-12607-6  0.778
2019 Udall JA, Long E, Hanson C, Yuan D, Ramaraj T, Conover JL, Gong L, Arick MA, Grover CE, Peterson DG, Wendel JF. Genome Sequence Assemblies of and . G3 (Bethesda, Md.). PMID 31462444 DOI: 10.1534/G3.119.400392  0.797
2019 Li B, Rui H, Li Y, Wang Q, Alariqi M, Qin L, Sun L, Ding X, Wang F, Zou J, Wang Y, Yuan D, Zhang X, Jin S. Robust CRISPR/Cpf1(Cas12a) mediated genome editing in allotetraploid cotton (G. hirsutum). Plant Biotechnology Journal. PMID 31055869 DOI: 10.1111/Pbi.13147  0.626
2018 Wang M, Tu L, Yuan D, Zhu, Shen C, Li J, Liu F, Pei L, Wang P, Zhao G, Ye Z, Huang H, Yan F, Ma Y, Zhang L, et al. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nature Genetics. PMID 30510239 DOI: 10.1038/S41588-018-0282-X  0.848
2017 Wang M, Tu L, Lin M, Lin Z, Wang P, Yang Q, Ye Z, Shen C, Li J, Zhang L, Zhou X, Nie X, Li Z, Guo K, Ma Y, ... ... Yuan D, et al. Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication. Nature Genetics. PMID 28263319 DOI: 10.1038/Ng.3807  0.638
2015 Yuan D, Tang Z, Wang M, Gao W, Tu L, Jin X, Chen L, He Y, Zhang L, Zhu L, Li Y, Liang Q, Lin Z, Yang X, Liu N, et al. The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres. Scientific Reports. 5: 17662. PMID 26634818 DOI: 10.1038/Srep17662  0.598
2015 Li Y, Tu L, Pettolino FA, Ji S, Hao J, Yuan D, Deng F, Tan J, Hu H, Wang Q, Llewellyn DJ, Zhang X. GbEXPATR, a species-specific expansin, enhances cotton fibre elongation through cell wall restructuring. Plant Biotechnology Journal. PMID 26269378 DOI: 10.1111/Pbi.12450  0.371
2015 Wang M, Yuan D, Tu L, Gao W, He Y, Hu H, Wang P, Liu N, Lindsey K, Zhang X. Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.). The New Phytologist. PMID 25919642 DOI: 10.1111/Nph.13429  0.371
2014 Liu C, Yuan D, Lin Z. Construction of an EST-SSR-based interspecific transcriptome linkage map of fibre development in cotton. Journal of Genetics. 93: 689-97. PMID 25572227 DOI: 10.1007/S12041-014-0425-5  0.338
2014 Xu L, Zhang W, He X, Liu M, Zhang K, Shaban M, Sun L, Zhu J, Luo Y, Yuan D, Zhang X, Zhu L. Functional characterization of cotton genes responsive to Verticillium dahliae through bioinformatics and reverse genetics strategies. Journal of Experimental Botany. 65: 6679-92. PMID 25326626 DOI: 10.1093/Jxb/Eru393  0.396
2013 Xia J, Zhang X, Yuan D, Chen L, Webster J, Fang AC. Gene prioritization of resistant rice gene against Xanthomas oryzae pv. oryzae by using text mining technologies. Biomed Research International. 2013: 853043. PMID 24371834 DOI: 10.1155/2013/853043  0.313
2013 Liu C, Yuan D, Zhang X, Lin Z. Isolation, characterization and mapping of genes differentially expressed during fibre development between Gossypium hirsutum and G. barbadense by cDNA-SRAP. Journal of Genetics. 92: 175-81. PMID 23970073 DOI: 10.1007/S12041-013-0238-Y  0.386
2013 Wang M, Yuan D, Gao W, Li Y, Tan J, Zhang X. A comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell walls. Plos One. 8: e72082. PMID 23951288 DOI: 10.1371/Journal.Pone.0072082  0.387
2013 Li X, Yuan D, Zhang J, Lin Z, Zhang X. Genetic mapping and characteristics of genes specifically or preferentially expressed during fiber development in cotton. Plos One. 8: e54444. PMID 23372723 DOI: 10.1371/Journal.Pone.0054444  0.418
2012 Yang X, Zhang X, Yuan D, Jin F, Zhang Y, Xu J. Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton. Bmc Plant Biology. 12: 110. PMID 22817809 DOI: 10.1186/1471-2229-12-110  0.423
2012 Li X, Yuan D, Wang H, Chen X, Wang B, Lin Z, Zhang X. Increasing cotton genome coverage with polymorphic SSRs as revealed by SSCP. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 55: 459-70. PMID 22670804 DOI: 10.1139/G2012-032  0.395
2012 Yuan D, Liang S, Lin Z, Zhang X. In silico comparative analysis of EST-SSRs in three cotton genomes African Journal of Biotechnology. 11: 13269-13371. DOI: 10.5897/Ajb11.655  0.583
2011 Xu L, Zhu L, Tu L, Liu L, Yuan D, Jin L, Long L, Zhang X. Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry. Journal of Experimental Botany. 62: 5607-21. PMID 21862479 DOI: 10.1093/Jxb/Err245  0.342
2011 Yuan D, Tu L, Zhang X. Generation, annotation and analysis of first large-scale expressed sequence tags from developing fiber of Gossypium barbadense L. Plos One. 6: e22758. PMID 21829504 DOI: 10.1371/Journal.Pone.0022758  0.396
2011 Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. Bmc Genomics. 12: 15. PMID 21214949 DOI: 10.1186/1471-2164-12-15  0.558
2011 Zhu L, He X, Yuan D, Xu L, Xu L, Tu L, Shen G, Zhang H, Zhang X. Genome-Wide Identification of Genes Responsive to ABA and Cold/Salt Stresses in Gossypium hirsutum by Data-Mining and Expression Pattern Analysis Agricultural Sciences in China. 10: 499-508. DOI: 10.1016/S1671-2927(11)60030-8  0.353
2010 Lin Z, Yuan D, Zhang X. Mapped SSR markers unevenly distributed on the cotton chromosomes Frontiers of Agriculture in China. 4: 257-264. DOI: 10.1007/S11703-010-0012-3  0.403
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