Jonathan F. Wendel - Publications

Ecology, Evolution, and Organismal Biology Iowa State University, Ames, IA, United States 

245 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Nie H, Wang Y, Wei C, Grover CE, Su Y, Wendel JF, Hua J. Embryogenic Calli Induction and Salt Stress Response Revealed by RNA-Seq in Diploid Wild Species and . Frontiers in Plant Science. 12: 715041. PMID 34512696 DOI: 10.3389/fpls.2021.715041  1
2021 Fernandes Gyorfy M, Miller ER, Conover JL, Grover CE, Wendel JF, Sloan DB, Sharbrough J. Nuclear-cytoplasmic balance: whole genome duplications induce elevated organellar genome copy number. The Plant Journal : For Cell and Molecular Biology. PMID 34309123 DOI: 10.1111/tpj.15436  1
2021 Glombik M, Copetti D, Bartos J, Stoces S, Zwierzykowski Z, Ruttink T, Wendel JF, Duchoslav M, Dolezel J, Studer B, Kopecky D. Reciprocal allopolyploid grasses (Festuca × Lolium) display stable patterns of genome dominance. The Plant Journal : For Cell and Molecular Biology. PMID 34152039 DOI: 10.1111/tpj.15375  0.01
2021 Yuan D, Grover CE, Hu G, Pan M, Miller ER, Conover JL, Hunt SP, Udall JA, Wendel JF. Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 8: 2003634. PMID 34026441 DOI: 10.1002/advs.202003634  1
2021 Conover JL, Sharbrough J, Wendel JF. pSONIC: Ploidy-aware Syntenic Orthologous Networks Identified via Collinearity. G3 (Bethesda, Md.). PMID 33983433 DOI: 10.1093/g3journal/jkab170  1
2021 Wang M, Li J, Wang P, Liu F, Liu Z, Zhao G, Xu Z, Pei L, Grover CE, Wendel JF, Wang K, Zhang X. Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton. Molecular Biology and Evolution. PMID 33973633 DOI: 10.1093/molbev/msab128  1
2021 Sun Y, Wu Y, Wang Y, Wang S, Wang X, Li G, Zhang X, Liang Z, Li J, Gong L, Wendel JF, Wang D, Liu B. Homoploid F1 hybrids and segmental allotetraploids of rice subspecies are similarly more tolerant to N-deficiency than are parental lines. Journal of Experimental Botany. PMID 33909897 DOI: 10.1093/jxb/erab184  1
2021 Grover CE, Yuan D, Arick MA, Miller ER, Hu G, Peterson DG, Wendel JF, Udall JA. The Gossypium stocksii genome as a novel resource for cotton improvement. G3 (Bethesda, Md.). PMID 33871013 DOI: 10.1093/g3journal/jkab125  1
2020 Chen Z, Zhao J, Qiao J, Li W, Li J, Xu R, Wang H, Liu Z, Xing B, Wendel JF, Grover CE. Comparative analysis of codon usage between and mitochondrial genomes. Mitochondrial Dna. Part B, Resources. 5: 2500-2506. PMID 33457843 DOI: 10.1080/23802359.2020.1780969  1
2020 Mason AS, Wendel JF. Homoeologous Exchanges, Segmental Allopolyploidy, and Polyploid Genome Evolution. Frontiers in Genetics. 11: 1014. PMID 33005183 DOI: 10.3389/Fgene.2020.01014  1
2020 Nieto Feliner G, Casacuberta J, Wendel JF. Genomics of Evolutionary Novelty in Hybrids and Polyploids. Frontiers in Genetics. 11: 792. PMID 32849797 DOI: 10.3389/Fgene.2020.00792  0.01
2020 Cao JF, Huang JQ, Liu X, Huang CC, Zheng ZS, Zhang XF, Shangguan XX, Wang LJ, Zhang YG, Wendel JF, Grover CE, Chen ZW. Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium. Bmc Genomics. 21: 575. PMID 32831017 DOI: 10.1186/S12864-020-06986-0  1
2020 Escudero M, Wendel JF. The grand sweep of chromosomal evolution in angiosperms. The New Phytologist. PMID 32772369 DOI: 10.1111/Nph.16802  0.01
2020 Li C, Wang X, Xiao Y, Sun X, Wang J, Yang X, Sun Y, Sha Y, Lv R, Yu Y, Ding B, Zhang Z, Li N, Wang T, Wendel JF, et al. Co-evolution in hybrid genomes: nuclear-encoded rubisco small subunits and their plastid-targeting translocons accompanying sequential allopolyploidy events in Triticum. Molecular Biology and Evolution. PMID 32602899 DOI: 10.1093/Molbev/Msaa158  1
2020 Cao JF, Zhao B, Huang CC, Chen ZW, Zhao T, Liu HR, Hu GJ, Shangguan XX, Shan CM, Wang LJ, Zhang TZ, Wendel JF, Guan XY, Chen XY. The miR319-Targeted GhTCP4 Promotes the Transition from Cell Elongation to Wall Thickening in Cotton Fiber. Molecular Plant. PMID 32422188 DOI: 10.1016/J.Molp.2020.05.006  1
2020 Chen ZJ, Sreedasyam A, Ando A, Song Q, De Santiago LM, Hulse-Kemp AM, Ding M, Ye W, Kirkbride RC, Jenkins J, Plott C, Lovell J, Lin YM, Vaughn R, Liu B, ... ... Wendel JF, et al. Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nature Genetics. PMID 32313247 DOI: 10.1038/S41588-020-0614-5  1
2020 Hu G, Grover CE, Arick MA, Liu M, Peterson DG, Wendel JF. Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids. Briefings in Bioinformatics. PMID 32219306 DOI: 10.1093/Bib/Bbaa035  1
2020 Grover CE, Pan M, Yuan D, Arick MA, Hu G, Brase L, Stelly DM, Lu Z, Schmitz RJ, Peterson DG, Wendel JF, Udall JA. The Genome as a Resource for Cotton Breeding and Evolution. G3 (Bethesda, Md.). PMID 32122962 DOI: 10.1534/G3.120.401050  1
2020 Garcia S, Wendel JF, Borowska-Zuchowska N, Aïnouche M, Kuderova A, Kovarik A. The Utility of Graph Clustering of 5S Ribosomal DNA Homoeologs in Plant Allopolyploids, Homoploid Hybrids, and Cryptic Introgressants. Frontiers in Plant Science. 11: 41. PMID 32117380 DOI: 10.3389/Fpls.2020.00041  0.01
2019 Grover CE, Yoo MJ, Lin M, Murphy MD, Harker DB, Byers RL, Lipka AE, Hu G, Yuan D, Conover JL, Udall JA, Paterson AH, Gore MA, Wendel JF. Genetic Analysis of the Transition from Wild to Domesticated Cotton ( L.). G3 (Bethesda, Md.). PMID 31843806 DOI: 10.1534/G3.119.400909  1
2019 Udall JA, Long E, Ramaraj T, Conover JL, Yuan D, Grover CE, Gong L, Arick MA, Masonbrink RE, Peterson DG, Wendel JF. The Genome Sequence of Illustrates a Descending Dysploidy in Plants. Frontiers in Plant Science. 10: 1541. PMID 31827481 DOI: 10.3389/Fpls.2019.01541  1
2019 Bao Y, Hu G, Grover CE, Conover J, Yuan D, Wendel JF. Unraveling cis and trans regulatory evolution during cotton domestication. Nature Communications. 10: 5399. PMID 31776348 DOI: 10.1038/S41467-019-13386-W  1
2019 Zhao N, Grover CE, Chen Z, Wendel JF, Hua J. Intergenomic gene transfer in diploid and allopolyploid Gossypium. Bmc Plant Biology. 19: 492. PMID 31718541 DOI: 10.1186/S12870-019-2041-2  1
2019 Karimi N, Grover CE, Gallagher JP, Wendel JF, Ané C, Baum DA. Reticulate evolution helps explain apparent homoplasy in floral biology and pollination in baobabs (Adansonia; Bombacoideae; Malvaceae). Systematic Biology. PMID 31693158 DOI: 10.1093/Sysbio/Syz073  1
2019 Dong Y, Hu G, Yu J, Thu SW, Grover CE, Zhu S, Wendel JF. Salt tolerance diversity in diploid and polyploid cotton (Gossypium) species. The Plant Journal : For Cell and Molecular Biology. PMID 31642116 DOI: 10.1111/Tpj.14580  1
2019 Hu L, Xu Z, Wang M, Fan R, Yuan D, Wu B, Wu H, Qin X, Yan L, Tan L, Sim S, Li W, Saski CA, Daniell H, Wendel JF, et al. The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis. Nature Communications. 10: 4702. PMID 31619678 DOI: 10.1038/S41467-019-12607-6  1
2019 Udall JA, Long E, Hanson C, Yuan D, Ramaraj T, Conover JL, Gong L, Arick MA, Grover CE, Peterson DG, Wendel JF. Genome Sequence Assemblies of and . G3 (Bethesda, Md.). PMID 31462444 DOI: 10.1534/G3.119.400392  1
2019 Li N, Xu C, Zhang A, Lv R, Meng X, Lin X, Gong L, Wendel JF, Liu B. DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids. The New Phytologist. PMID 30919978 DOI: 10.1111/Nph.15820  1
2018 Grover CE, Arick Ii MA, Thrash A, Conover JL, Sanders WS, Peterson DG, Frelichowski JE, Scheffler JA, Scheffler BE, Wendel JF. Insights into the evolution of the New World diploid cottons (Gossypium, subgenus Houzingenia) based on genome sequencing. Genome Biology and Evolution. PMID 30476109 DOI: 10.1093/Gbe/Evy256  1
2018 Conover JL, Karimi N, Stenz N, Ané C, Grover CE, Skema C, Tate JA, Wolff K, Logan SA, Wendel JF, Baum DA. A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods? Journal of Integrative Plant Biology. PMID 30474311 DOI: 10.1111/Jipb.12746  1
2018 Li C, Sun X, Conover JL, Zhang Z, Wang J, Wang X, Deng X, Wang H, Liu B, Wendel JF, Gong L. Cytonuclear coevolution following homoploid hybrid speciation in Aegilops tauschii. Molecular Biology and Evolution. PMID 30445640 DOI: 10.1093/Molbev/Msy215  1
2018 Hu G, Wendel JF. Cis-trans controls and regulatory novelty accompanying allopolyploidization. The New Phytologist. PMID 30290011 DOI: 10.1111/Nph.15515  1
2018 Zhao B, Cao JF, Hu GJ, Chen ZW, Wang LY, Shangguan XX, Wang LJ, Mao YB, Zhang TZ, Wendel JF, Chen XY. Core cis-element variation confers subgenome-biased expression of a transcription factor that functions in cotton fiber elongation. The New Phytologist. PMID 29465754 DOI: 10.1111/Nph.15063  1
2018 Wendel JF, Lisch D, Hu G, Mason AS. The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation. Current Opinion in Genetics & Development. 49: 1-7. PMID 29438956 DOI: 10.1016/J.Gde.2018.01.004  1
2018 Bottani S, Zabet NR, Wendel JF, Veitia RA. Gene Expression Dominance in Allopolyploids: Hypotheses and Models. Trends in Plant Science. PMID 29433919 DOI: 10.1016/J.Tplants.2018.01.002  0.01
2017 Sharbrough J, Conover JL, Tate JA, Wendel JF, Sloan DB. Cytonuclear responses to genome doubling. American Journal of Botany. 104: 1277-1280. PMID 29885242 DOI: 10.3732/Ajb.1700293  1
2017 Grover CE, Arick MA, Conover JL, Thrash A, Hu G, Sanders WS, Hsu CY, Naqvi RZ, Farooq M, Li X, Gong L, Mudge J, Ramaraj T, Udall JA, Peterson DG, ... Wendel JF, et al. Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing. Genome Biology and Evolution. 9: 3328-3344. PMID 29194487 DOI: 10.1093/Gbe/Evx248  1
2017 Sun Y, Wu Y, Yang C, Sun S, Lin X, Liu L, Xu C, Wendel JF, Gong L, Liu B. Segmental allotetraploidy generates extensive homeologous expression rewiring and phenotypic diversity at the population level in rice. Molecular Ecology. PMID 28802080 DOI: 10.1111/Mec.14297  1
2017 Rousseau H, Rousseau-Gueutin M, Dauvergne X, Boutte J, Simon G, Marnet N, Bouchereau A, Guiheneuf S, Bazureau JP, Morice J, Ravanel S, Cabello-Hurtado F, Ainouche A, Salmon A, Wendel JF, et al. Evolution of DMSP (dimethylsulfoniopropionate) biosynthesis pathway: Origin and phylogenetic distribution in polyploid Spartina (Poaceae, Chloridoideae). Molecular Phylogenetics and Evolution. PMID 28694102 DOI: 10.1016/J.Ympev.2017.07.003  1
2017 Wang X, Zhang Z, Fu T, Hu L, Xu C, Gong L, Wendel JF, Liu B. Gene-body CG methylation and divergent expression of duplicate genes in rice. Scientific Reports. 7: 2675. PMID 28572585 DOI: 10.1038/S41598-017-02860-4  1
2017 Chen Z, Grover CE, Li P, Wang Y, Nie H, Zhao Y, Wang M, Liu F, Zhou Z, Wang X, Cai X, Wang K, Wendel JF, Hua J. Molecular evolution of the plastid genome during diversification of the cotton genus. Molecular Phylogenetics and Evolution. PMID 28414099 DOI: 10.1016/J.Ympev.2017.04.014  1
2017 Hinze LL, Hulse-Kemp AM, Wilson IW, Zhu QH, Llewellyn DJ, Taylor JM, Spriggs A, Fang DD, Ulloa M, Burke JJ, Giband M, Lacape JM, Van Deynze A, Udall JA, Scheffler JA, ... ... Wendel JF, et al. Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array. Bmc Plant Biology. 17: 37. PMID 28158969 DOI: 10.1186/S12870-017-0981-Y  1
2017 Hu G, Hovav R, Grover CE, Faigenboim-Doron A, Kadmon N, Page JT, Udall JA, Wendel JF. Evolutionary Conservation and Divergence of Gene Coexpression Networks in Gossypium (Cotton) Seeds. Genome Biology and Evolution. PMID 28062755 DOI: 10.1093/Gbe/Evw280  1
2017 Snodgrass SJ, Jareczek J, Wendel JF. An examination of nucleotypic effects in diploid and polyploid cotton. Aob Plants. 9. PMID 28013252 DOI: 10.1093/Aobpla/Plw082  0.01
2016 Chen Z, Nie H, Grover CE, Wang Y, Li P, Wang M, Pei H, Zhao Y, Li S, Wendel JF, Hua J. Entire nucleotide sequences of Gossypium raimondii and G. arboreum mitochondrial genomes revealed A-genome species as cytoplasmic donor of the allotetraploid species. Plant Biology (Stuttgart, Germany). PMID 28008701 DOI: 10.1111/Plb.12536  1
2016 Han J, Masonbrink RE, Shan W, Song F, Zhang J, Yu W, Wang K, Wu Y, Tang H, Wendel JF, Wang K. Rapid proliferationand nucleolar organizer targeting centromeric retrotransposonsin cotton. The Plant Journal : For Cell and Molecular Biology. PMID 27539015 DOI: 10.1111/Tpj.13309  1
2016 Chen Z, Feng K, Grover CE, Li P, Liu F, Wang Y, Xu Q, Shang M, Zhou Z, Cai X, Wang X, Wendel JF, Wang K, Hua J. Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species. Plos One. 11: e0157183. PMID 27309527 DOI: 10.1371/Journal.Pone.0157183  1
2016 Renny-Byfield S, Page JT, Udall JA, Sanders WS, Peterson DG, Arick MA, Grover CE, Wendel JF. Independent domestication of two Old World cotton species. Genome Biology and Evolution. PMID 27289095 DOI: 10.1093/Gbe/Evw129  1
2016 Gallagher JP, Grover CE, Hu G, Wendel JF. Insights into the Ecology and Evolution of Polyploid Plants through Network Analysis. Molecular Ecology. PMID 27027619 DOI: 10.1111/Mec.13626  1
2016 Wendel JF, Jackson SA, Meyers BC, Wing RA. Evolution of plant genome architecture. Genome Biology. 17: 37. PMID 26926526 DOI: 10.1186/S13059-016-0908-1  1
2016 Casacuberta JM, Jackson S, Panaud O, Purugganan M, Wendel J. Evolution of Plant Phenotypes, from Genomes to Traits. G3 (Bethesda, Md.). PMID 26869620 DOI: 10.1534/G3.115.025502  1
2015 Gong L, Masonbrink RE, Grover CE, Renny-Byfield S, Wendel JF. A Cluster of Recently Inserted Transposable Elements Associated with siRNAs in Gossypium raimondii. The Plant Genome. 8: eplantgenome2014.11.. PMID 33228305 DOI: 10.3835/plantgenome2014.11.0088  1
2015 Grover CE, Gallagher JP, Wendel JF. Candidate Gene Identification of Flowering Time Genes in Cotton. The Plant Genome. 8: eplantgenome2014.12.. PMID 33228302 DOI: 10.3835/plantgenome2014.12.0098  1
2015 Hovav R, Faigenboim-Doron A, Kadmon N, Hu G, Zhang X, Gallagher JP, Wendel JF. A Transcriptome Profile for Developing Seed of Polyploid Cotton. The Plant Genome. 8: eplantgenome2014.08.. PMID 33228286 DOI: 10.3835/plantgenome2014.08.0041  1
2015 Tang M, Chen Z, Grover CE, Wang Y, Li S, Liu G, Ma Z, Wendel JF, Hua J. Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes. Bmc Genomics. 16: 770. PMID 26459858 DOI: 10.1186/S12864-015-1988-0  1
2015 Wendel JF. The wondrous cycles of polyploidy in plants. American Journal of Botany. 102: 1753-6. PMID 26451037 DOI: 10.3732/Ajb.1500320  1
2015 Li LF, Liu B, Olsen KM, Wendel JF. Multiple rounds of ancient and recent hybridizations have occurred within the Aegilops-Triticum complex. The New Phytologist. PMID 26147650 DOI: 10.1111/Nph.13563  1
2015 Grover CE, Gallagher JP, Jareczek JJ, Page JT, Udall JA, Gore MA, Wendel JF. Re-evaluating the phylogeny of allopolyploid Gossypium L. Molecular Phylogenetics and Evolution. 92: 45-52. PMID 26049043 DOI: 10.1016/J.Ympev.2015.05.023  1
2015 Paterson AH, Wendel JF. Unraveling the fabric of polyploidy. Nature Biotechnology. 33: 491-3. PMID 25965758 DOI: 10.1038/Nbt.3217  1
2015 Hu G, Koh J, Yoo MJ, Chen S, Wendel JF. Gene-expression novelty in allopolyploid cotton: a proteomic perspective. Genetics. 200: 91-104. PMID 25735302 DOI: 10.1534/Genetics.115.174367  1
2015 Li LF, Liu B, Olsen KM, Wendel JF. A re-evaluation of the homoploid hybrid origin of Aegilops tauschii, the donor of the wheat D-subgenome. The New Phytologist. PMID 25612061 DOI: 10.1111/Nph.13294  1
2015 Renny-Byfield S, Gong L, Gallagher JP, Wendel JF. Persistence of subgenomes in paleopolyploid cotton after 60 my of evolution. Molecular Biology and Evolution. 32: 1063-71. PMID 25573906 DOI: 10.1093/Molbev/Msv001  1
2015 Grover CE, Gallagher JP, Wendel JF. Candidate gene identification of flowering time genes in cotton Plant Genome. 8. DOI: 10.3835/Plantgenome2014.12.0098  1
2015 Gong L, Masonbrink RE, Grover CE, Renny-Byfield S, Wendel JF. A cluster of recently inserted transposable elements associated with sirnas in gossypium raimondii Plant Genome. 8. DOI: 10.3835/Plantgenome2014.11.0088  1
2015 Hovav R, Faigenboim-Doron A, Kadmon N, Hu G, Zhang X, Gallagher JP, Wendel JF. A transcriptome profile for developing seed of polyploid cotton Plant Genome. 8. DOI: 10.3835/Plantgenome2014.08.0041  1
2015 Stewart JM, Craven LA, Brubaker C, Wendel JF. Gossypium anapoides (Malvaceae), a New Species from Western Australia Novon. 23: 448-451. DOI: 10.3417/2007140  1
2014 Masonbrink RE, Gallagher JP, Jareczek JJ, Renny-Byfield S, Grover CE, Gong L, Wendel JF. CenH3 evolution in diploids and polyploids of three angiosperm genera. Bmc Plant Biology. 14: 383. PMID 25547313 DOI: 10.1186/S12870-014-0383-3  1
2014 Shan CM, Shangguan XX, Zhao B, Zhang XF, Chao LM, Yang CQ, Wang LJ, Zhu HY, Zeng YD, Guo WZ, Zhou BL, Hu GJ, Guan XY, Chen ZJ, Wendel JF, et al. Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3. Nature Communications. 5: 5519. PMID 25413731 DOI: 10.1038/Ncomms6519  1
2014 Hu G, Koh J, Yoo MJ, Pathak D, Chen S, Wendel JF. Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.). Planta. 240: 1237-51. PMID 25156487 DOI: 10.1007/S00425-014-2146-7  1
2014 Renny-Byfield S, Wendel JF. Doubling down on genomes: polyploidy and crop plants. American Journal of Botany. 101: 1711-25. PMID 25090999 DOI: 10.3732/Ajb.1400119  1
2014 Gong L, Olson M, Wendel JF. Cytonuclear evolution of rubisco in four allopolyploid lineages. Molecular Biology and Evolution. 31: 2624-36. PMID 25015644 DOI: 10.1093/Molbev/Msu207  1
2014 Zhang H, Zhu B, Qi B, Gou X, Dong Y, Xu C, Zhang B, Huang W, Liu C, Wang X, Yang C, Zhou H, Kashkush K, Feldman M, Wendel JF, et al. Evolution of the BBAA component of bread wheat during its history at the allohexaploid level. The Plant Cell. 26: 2761-76. PMID 24989045 DOI: 10.1105/Tpc.114.128439  1
2014 Buggs RJ, Wendel JF, Doyle JJ, Soltis DE, Soltis PS, Coate JE. The legacy of diploid progenitors in allopolyploid gene expression patterns. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958927 DOI: 10.1098/Rstb.2013.0354  1
2014 Crawford DJ, Doyle JJ, Soltis DE, Soltis PS, Wendel JF. Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 369. PMID 24958916 DOI: 10.1098/Rstb.2013.0341  1
2014 Xu C, Bai Y, Lin X, Zhao N, Hu L, Gong Z, Wendel JF, Liu B. Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies. Molecular Biology and Evolution. 31: 1066-76. PMID 24577842 DOI: 10.1093/Molbev/Msu085  1
2014 Panaud O, Jackson SA, Wendel JF. Drivers and dynamics of diversity in plant genomes. The New Phytologist. 202: 15-8. PMID 24571694 DOI: 10.1111/Nph.12633  1
2014 Renny-Byfield S, Gallagher JP, Grover CE, Szadkowski E, Page JT, Udall JA, Wang X, Paterson AH, Wendel JF. Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence. Genome Biology and Evolution. 6: 559-71. PMID 24558256 DOI: 10.1093/Gbe/Evu037  1
2014 Yoo MJ, Wendel JF. Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome. Plos Genetics. 10: e1004073. PMID 24391525 DOI: 10.1371/Journal.Pgen.1004073  1
2014 Grover CE, Zhu X, Grupp KK, Jareczek JJ, Gallagher JP, Szadkowski E, Seijo JG, Wendel JF. Molecular confirmation of species status for the allopolyploid cotton species, Gossypium ekmanianum Wittmack Genetic Resources and Crop Evolution. 62: 103-114. DOI: 10.1007/S10722-014-0138-X  1
2014 Ainouche ML, Wendel JF. Polyploid speciation and genome evolution: Lessons from recent allopolyploids Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life. 87-113. DOI: 10.1007/978-3-319-07623-2_5  1
2013 Gong L, Kakrana A, Arikit S, Meyers BC, Wendel JF. Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species. Genome Biology and Evolution. 5: 2449-59. PMID 24281048 DOI: 10.1093/Gbe/Evt196  1
2013 Page JT, Huynh MD, Liechty ZS, Grupp K, Stelly D, Hulse AM, Ashrafi H, Van Deynze A, Wendel JF, Udall JA. Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing. G3 (Bethesda, Md.). 3: 1809-18. PMID 23979935 DOI: 10.1534/G3.113.007229  1
2013 Olsen KM, Wendel JF. Crop plants as models for understanding plant adaptation and diversification. Frontiers in Plant Science. 4: 290. PMID 23914199 DOI: 10.3389/Fpls.2013.00290  1
2013 Hu G, Koh J, Yoo MJ, Grupp K, Chen S, Wendel JF. Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense. The New Phytologist. 200: 570-82. PMID 23795774 DOI: 10.1111/Nph.12381  1
2013 Madlung A, Wendel JF. Genetic and epigenetic aspects of polyploid evolution in plants Cytogenetic and Genome Research. 140: 270-285. PMID 23751292 DOI: 10.1159/000351430  1
2013 Olsen KM, Wendel JF. A bountiful harvest: genomic insights into crop domestication phenotypes. Annual Review of Plant Biology. 64: 47-70. PMID 23451788 DOI: 10.1146/Annurev-Arplant-050312-120048  1
2013 Yoo MJ, Szadkowski E, Wendel JF. Homoeolog expression bias and expression level dominance in allopolyploid cotton Heredity. 110: 171-180. PMID 23169565 DOI: 10.1038/hdy.2012.94  1
2013 Grandont L, Jenczewski E, Lloyd A, Tayalé A, Parisod C, Weiss-Schneeweiss H, Emadzade K, Jang T-, Schneeweiss GM, Stenberg P, Saura A, Collares-Pereira MJ, Matos I, Choleva L, Janko K, ... ... Wendel JF, et al. Contents Vol. 140, 2013 Cytogenetic and Genome Research. 140. DOI: 10.1159/000354069  1
2013 Leitch IJ, Greilhuber J, Doležel J, Wendel JF. Preface Plant Genome Diversity. 2: v-ix. DOI: 10.1007/978-3-7091-1160-4  1
2013 Adams KL, Wendel JF. Dynamics of Duplicated Gene Expression in Polyploid Cotton Polyploid and Hybrid Genomics. 187-194. DOI: 10.1002/9781118552872.ch11  1
2012 Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature. 492: 423-7. PMID 23257886 DOI: 10.1038/Nature11798  1
2012 Grover CE, Gallagher JP, Szadkowski EP, Yoo MJ, Flagel LE, Wendel JF. Homoeolog expression bias and expression level dominance in allopolyploids. The New Phytologist. 196: 966-71. PMID 23033870 DOI: 10.1111/J.1469-8137.2012.04365.X  1
2012 Salmon A, Udall JA, Jeddeloh JA, Wendel J. Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton. G3 (Bethesda, Md.). 2: 921-30. PMID 22908041 DOI: 10.1534/G3.112.003392  1
2012 Flagel LE, Wendel JF, Udall JA. Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton. Bmc Genomics. 13: 302. PMID 22768919 DOI: 10.1186/1471-2164-13-302  1
2012 Gong L, Salmon A, Yoo MJ, Grupp KK, Wang Z, Paterson AH, Wendel JF. The cytonuclear dimension of allopolyploid evolution: an example from cotton using rubisco. Molecular Biology and Evolution. 29: 3023-36. PMID 22490824 DOI: 10.1093/Molbev/Mss110  1
2012 Grover CE, Salmon A, Wendel JF. Targeted sequence capture as a powerful tool for evolutionary analysis. American Journal of Botany. 99: 312-9. PMID 22268225 DOI: 10.3732/Ajb.1100323  1
2012 Salmon A, Udall JA, Jeddeloh JA, Wendel J. Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton G3: Genes, Genomes, Genetics. 2: 921-930. DOI: 10.1534/g3.112.003392  1
2012 Grover CE, Grupp KK, Wanzek RJ, Wendel JF. Assessing the monophyly of polyploid Gossypium species Plant Systematics and Evolution. 298: 1177-1183. DOI: 10.1007/S00606-012-0615-7  1
2012 Wendel JF, Greilhuber J, Leitch IJ, Doležel J. Plant genome diversity Plant Genome Diversity. 1: 1-279. DOI: 10.1007/978-3-7091-1130-7  1
2012 Wendel JF, Flagel LE, Adams KL. Jeans, genes, and genomes: Cotton as a model for studying polyploidy Polyploidy and Genome Evolution. 2147483647: 181-207. DOI: 10.1007/978-3-642-31442-1_10  1
2011 Bao Y, Hu G, Flagel LE, Salmon A, Bezanilla M, Paterson AH, Wang Z, Wendel JF. Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium). Proceedings of the National Academy of Sciences of the United States of America. 108: 21152-7. PMID 22160709 DOI: 10.1073/Pnas.1115926109  1
2011 Hu G, Houston NL, Pathak D, Schmidt L, Thelen JJ, Wendel JF. Genomically biased accumulation of seed storage proteins in allopolyploid cotton. Genetics. 189: 1103-15. PMID 21900265 DOI: 10.1534/Genetics.111.132407  1
2011 Richards CL, Wendel JF. The hairy problem of epigenetics in evolution. The New Phytologist. 191: 7-9. PMID 21631505 DOI: 10.1111/J.1469-8137.2011.03761.X  1
2011 Wendel J, O'Neill G. Cottoning on to domestication Australian Life Scientist. 8: 14-19.  1
2010 Rapp RA, Haigler CH, Flagel L, Hovav RH, Udall JA, Wendel JF. Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication. Bmc Biology. 8: 139. PMID 21078138 DOI: 10.1186/1741-7007-8-139  1
2010 Hu G, Hawkins JS, Grover CE, Wendel JF. The history and disposition of transposable elements in polyploid Gossypium. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 53: 599-607. PMID 20725147 DOI: 10.1139/g10-038  1
2010 Lin L, Pierce GJ, Bowers JE, Estill JC, Compton RO, Rainville LK, Kim C, Lemke C, Rong J, Tang H, Wang X, Braidotti M, Chen AH, Chicola K, Collura K, ... ... Wendel JF, et al. A draft physical map of a D-genome cotton species (Gossypium raimondii). Bmc Genomics. 11: 395. PMID 20569427 DOI: 10.1186/1471-2164-11-395  1
2010 Betancur L, Singh B, Rapp RA, Wendel JF, Marks MD, Roberts AW, Haigler CH. Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber. Journal of Integrative Plant Biology. 52: 205-20. PMID 20377682 DOI: 10.1111/J.1744-7909.2010.00934.X  1
2010 Flagel LE, Wendel JF. Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation. The New Phytologist. 186: 184-93. PMID 20002320 DOI: 10.1111/J.1469-8137.2009.03107.X  1
2010 Salmon A, Flagel L, Ying B, Udall JA, Wendel JF. Homoeologous nonreciprocal recombination in polyploid cotton. The New Phytologist. 186: 123-34. PMID 19925554 DOI: 10.1111/J.1469-8137.2009.03093.X  1
2010 Bao Y, Wendel JF, Ge S. Multiple patterns of rDNA evolution following polyploidy in Oryza. Molecular Phylogenetics and Evolution. 55: 136-42. PMID 19857580 DOI: 10.1016/J.Ympev.2009.10.023  1
2010 Pleasants JM, Wendel JF. Reproductive and pollination biology of the endemic hawaiian cotton, gossypium tomentosum (malvaceae) Pacific Science. 64: 45-55. DOI: 10.2984/64.1.045  1
2010 Grover CE, Wendel JF. Recent Insights into Mechanisms of Genome Size Change in Plants Journal of Botany. 2010: 1-8. DOI: 10.1155/2010/382732  1
2010 Paterson AH, Rong Jk, Gingle AR, Chee PW, Dennis ES, Llewellyn D, Dure LS, Haigler C, Myers GO, Peterson DG, ur Rahman M, Zafar Y, Reddy U, Saranga Y, Stewart JM, ... ... Wendel JF, et al. Sequencing and utilization of the Gossypium genomes Tropical Plant Biology. 3: 71-74. DOI: 10.1007/S12042-010-9051-4  1
2009 Hawkins JS, Proulx SR, Rapp RA, Wendel JF. Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants. Proceedings of the National Academy of Sciences of the United States of America. 106: 17811-6. PMID 19815511 DOI: 10.1073/Pnas.0904339106  1
2009 Chaudhary B, Hovav R, Flagel L, Mittler R, Wendel JF. Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium). Bmc Genomics. 10: 378. PMID 19686594 DOI: 10.1186/1471-2164-10-378  1
2009 Flagel LE, Wendel JF. Gene duplication and evolutionary novelty in plants. The New Phytologist. 183: 557-64. PMID 19555435 DOI: 10.1111/J.1469-8137.2009.02923.X  1
2009 Rapp RA, Udall JA, Wendel JF. Genomic expression dominance in allopolyploids. Bmc Biology. 7: 18. PMID 19409075 DOI: 10.1186/1741-7007-7-18  1
2009 Chaudhary B, Flagel L, Stupar RM, Udall JA, Verma N, Springer NM, Wendel JF. Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium). Genetics. 182: 503-17. PMID 19363125 DOI: 10.1534/Genetics.109.102608  1
2009 Flagel LE, Chen L, Chaudhary B, Wendel JF. Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton. The Journal of Heredity. 100: 487-90. PMID 19264969 DOI: 10.1093/Jhered/Esp003  1
2009 Butterworth KM, Adams DC, Horner HT, Wendel JF. Initiation and early development of fiber in wild and cultivated cotton International Journal of Plant Sciences. 170: 561-574. DOI: 10.1086/597817  1
2008 Flagel LE, Rapp RA, Grover CE, Widrlechner MP, Hawkins J, Grafenberg JL, Alvarez I, Chung GY, Wendel JF. Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea. American Journal of Botany. 95: 756-65. PMID 21632401 DOI: 10.3732/Ajb.0800049  1
2008 Doyle JJ, Flagel LE, Paterson AH, Rapp RA, Soltis DE, Soltis PS, Wendel JF. Evolutionary genetics of genome merger and doubling in plants. Annual Review of Genetics. 42: 443-61. PMID 18983261 DOI: 10.1146/Annurev.Genet.42.110807.091524  1
2008 Chaudhary B, Hovav R, Rapp R, Verma N, Udall JA, Wendel JF. Global analysis of gene expression in cotton fibers from wild and domesticated Gossypium barbadense. Evolution & Development. 10: 567-82. PMID 18803775 DOI: 10.1111/J.1525-142X.2008.00272.X  1
2008 Grover CE, Hawkins JS, Wendel JF. Phylogenetic insights into the pace and pattern of plant genome size evolution. Genome Dynamics. 4: 57-68. PMID 18756077 DOI: 10.1159/000126006  1
2008 Hovav R, Chaudhary B, Udall JA, Flagel L, Wendel JF. Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton. Genetics. 179: 1725-33. PMID 18562666 DOI: 10.1534/Genetics.108.089656  1
2008 Hovav R, Udall JA, Chaudhary B, Rapp R, Flagel L, Wendel JF. Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant. Proceedings of the National Academy of Sciences of the United States of America. 105: 6191-5. PMID 18420816 DOI: 10.1073/Pnas.0711569105  1
2008 Flagel L, Udall J, Nettleton D, Wendel J. Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution. Bmc Biology. 6: 16. PMID 18416842 DOI: 10.1186/1741-7007-6-16  1
2008 Grover CE, Yu Y, Wing RA, Paterson AH, Wendel JF. A phylogenetic analysis of indel dynamics in the cotton genus. Molecular Biology and Evolution. 25: 1415-28. PMID 18400789 DOI: 10.1093/Molbev/Msn085  1
2008 Hawkins JS, Hu G, Rapp RA, Grafenberg JL, Wendel JF. Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 51: 11-8. PMID 18356935 DOI: 10.1139/g07-099  1
2008 Hovav R, Udall JA, Chaudhary B, Hovav E, Flagel L, Hu G, Wendel JF. The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism. Plos Genetics. 4: e25. PMID 18248099 DOI: 10.1371/Journal.Pgen.0040025  1
2008 Hovav R, Udall JA, Hovav E, Rapp R, Flagel L, Wendel JF. A majority of cotton genes are expressed in single-celled fiber. Planta. 227: 319-29. PMID 17849148 DOI: 10.1007/S00425-007-0619-7  1
2008 Hawkins JS, Grover CE, Wendel JF. Repeated big bangs and the expanding universe: Directionality in plant genome size evolution Plant Science. 174: 557-562. DOI: 10.1016/J.Plantsci.2008.03.015  1
2007 Percifield RJ, Hawkins JS, McCoy JA, Widrlechner MP, Wendel JF. Genetic diversity in Hypericum and AFLP Markers for species-specific identification of H. perforatum L. Planta Medica. 73: 1614-21. PMID 18072074 DOI: 10.1055/S-2007-993749  1
2007 Chen ZJ, Scheffler BE, Dennis E, Triplett BA, Zhang T, Guo W, Chen X, Stelly DM, Rabinowicz PD, Town CD, Arioli T, Brubaker C, Cantrell RG, Lacape JM, Ulloa M, ... ... Wendel JF, et al. Toward sequencing cotton (Gossypium) genomes. Plant Physiology. 145: 1303-10. PMID 18056866 DOI: 10.1104/Pp.107.107672  1
2007 Grover CE, Hawkins JS, Wendel JF. Tobacco genomes quickly go up in smoke. The New Phytologist. 175: 599-602. PMID 17688576 DOI: 10.1111/J.1469-8137.2007.02197.X  1
2007 Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH. Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes to a complex network of genes and gene clusters implicated in lint fiber development. Genetics. 176: 2577-88. PMID 17565937 DOI: 10.1534/Genetics.107.074518  1
2007 Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). The Plant Journal : For Cell and Molecular Biology. 50: 995-1006. PMID 17461788 DOI: 10.1111/J.1365-313X.2007.03102.X  1
2007 Udall JA, Flagel LE, Cheung F, Woodward AW, Hovav R, Rapp RA, Swanson JM, Lee JJ, Gingle AR, Nettleton D, Town CD, Chen ZJ, Wendel JF. Spotted cotton oligonucleotide microarrays for gene expression analysis. Bmc Genomics. 8: 81. PMID 17389046 DOI: 10.1186/1471-2164-8-81  1
2007 Fortune PM, Schierenbeck KA, Ainouche AK, Jacquemin J, Wendel JF, Ainouche ML. Evolutionary dynamics of Waxy and the origin of hexaploid Spartina species (Poaceae). Molecular Phylogenetics and Evolution. 43: 1040-55. PMID 17208463 DOI: 10.1016/J.Ympev.2006.11.018  1
2006 Senchina DS, Flagel LE, Wendel JF, Kohut ML. PHENETIC COMPARISON OF SEVEN Echinacea SPECIES BASED ON IMMUNOMODULATORY CHARACTERISTICS. Economic Botany. 60: 205-211. PMID 18301733 DOI: 10.1663/0013-0001(2006)60[205:Pcoses]2.0.Co;2  1
2006 Keyte AL, Percifield R, Liu B, Wendel JF. Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L.). The Journal of Heredity. 97: 444-50. PMID 16987937 DOI: 10.1093/Jhered/Esl023  1
2006 Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF. Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Research. 16: 1252-61. PMID 16954538 DOI: 10.1101/Gr.5282906  1
2006 Udall JA, Swanson JM, Nettleton D, Percifield RJ, Wendel JF. A novel approach for characterizing expression levels of genes duplicated by polyploidy. Genetics. 173: 1823-7. PMID 16702424 DOI: 10.1534/Genetics.106.058271  1
2006 Alvarez I, Wendel JF. Cryptic interspecific introgression and genetic differentiation within Gossypium aridum (Malvaceae) and its relatives. Evolution; International Journal of Organic Evolution. 60: 505-17. PMID 16637496 DOI: 10.1111/J.0014-3820.2006.Tb01132.X  1
2006 Udall JA, Swanson JM, Haller K, Rapp RA, Sparks ME, Hatfield J, Yu Y, Wu Y, Dowd C, Arpat AB, Sickler BA, Wilkins TA, Guo JY, Chen XY, Scheffler J, ... ... Wendel JF, et al. A global assembly of cotton ESTs. Genome Research. 16: 441-50. PMID 16478941 DOI: 10.1101/Gr.4602906  1
2006 Udall JA, Wendel JF. Polyploidy and crop improvement Crop Science. 46: S-3-S-14. DOI: 10.2135/Cropsci2006.07.0489Tpg  1
2005 Rapp RA, Wendel JF. Epigenetics and plant evolution. The New Phytologist. 168: 81-91. PMID 16159323 DOI: 10.1111/J.1469-8137.2005.01491.X  1
2005 Adams KL, Wendel JF. Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids. Genetics. 171: 2139-42. PMID 16143609 DOI: 10.1534/Genetics.105.047357  1
2005 Adams KL, Wendel JF. Novel patterns of gene expression in polyploid plants. Trends in Genetics : Tig. 21: 539-43. PMID 16098633 DOI: 10.1016/J.Tig.2005.07.009  1
2005 Rong J, Pierce GJ, Waghmare VN, Rogers CJ, Desai A, Chee PW, May OL, Gannaway JR, Wendel JF, Wilkins TA, Paterson AH. Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 1137-46. PMID 16075204 DOI: 10.1007/S00122-005-0041-0  1
2005 Waghmare VN, Rong J, Rogers CJ, Pierce GJ, Wendel JF, Paterson AH. Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 665-76. PMID 16044266 DOI: 10.1007/S00122-005-2032-6  1
2005 Salmon A, Ainouche ML, Wendel JF. Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Molecular Ecology. 14: 1163-75. PMID 15773943 DOI: 10.1111/J.1365-294X.2005.02488.X  1
2005 Adams KL, Wendel JF. Polyploidy and genome evolution in plants. Current Opinion in Plant Biology. 8: 135-41. PMID 15752992 DOI: 10.1016/J.Pbi.2005.01.001  1
2005 Hawkins JS, Pleasants J, Wendel JF. Identification of AFLP markers that discriminate between cultivated cotton and the Hawaiian Island endemic, Gossypium tomentosum Nuttall ex Seeman Genetic Resources and Crop Evolution. 52: 1069-1078. DOI: 10.1007/S10722-004-6115-Z  1
2005 Rapp RA, Alvarez I, Wendel JF. Molecular confirmation of the position of Gossypium trifurcatum vollesen Genetic Resources and Crop Evolution. 52: 749-753. DOI: 10.1007/S10722-004-6097-X  1
2005 Álvarez I, Cronn R, Wendel JF. Phylogeny of the New World diploid cottons (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes Plant Systematics and Evolution. 252: 199-214. DOI: 10.1007/S00606-004-0294-0  1
2004 Rudgers JA, Strauss SY, Wendel JF. Trade-offs among anti-herbivore resistance traits: insights from Gossypieae (Malvaceae). American Journal of Botany. 91: 871-80. PMID 21653443 DOI: 10.3732/Ajb.91.6.871  1
2004 Adams KL, Percifield R, Wendel JF. Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics. 168: 2217-26. PMID 15371349 DOI: 10.1534/Genetics.104.033522  1
2004 Grover CE, Kim H, Wing RA, Paterson AH, Wendel JF. Incongruent patterns of local and global genome size evolution in cotton. Genome Research. 14: 1474-82. PMID 15256507 DOI: 10.1101/Gr.2673204  1
2004 Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, ... ... Wendel JF, et al. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 166: 389-417. PMID 15020432 DOI: 10.1534/Genetics.166.1.389  1
2004 Rieseberg LH, Wendel J. Plant speciation - Rise of the poor cousins New Phytologist. 161: 3-8. DOI: 10.1111/J.1469-8137.2004.00957.X  1
2004 Cronn R, Wendel JF. Cryptic trysts, genomic mergers, and plant speciation New Phytologist. 161: 133-142. DOI: 10.1111/J.1469-8137.2004.00947.X  1
2004 Adams KL, Wendel JF. Exploring the genomic mysteries of polyploidy in cotton Biological Journal of the Linnean Society. 82: 573-581. DOI: 10.1111/J.1095-8312.2004.00342.X  1
2004 Small RL, Cronn RC, Wendel JF. Use of nuclear genes for phylogeny reconstruction in plants Australian Systematic Botany. 17: 145-170. DOI: 10.1071/Sb03015  1
2003 Schnabel A, McDonel PE, Wendel JF. Phylogenetic relationships in Gleditsia (Leguminosae) based on ITS sequences. American Journal of Botany. 90: 310-20. PMID 21659122 DOI: 10.3732/Ajb.90.2.310  1
2003 Cronn R, Small RL, Haselkorn T, Wendel JF. Cryptic repeated genomic recombination during speciation in Gossypium gossypioides. Evolution; International Journal of Organic Evolution. 57: 2475-89. PMID 14686525 DOI: 10.1111/J.0014-3820.2003.Tb01493.X  1
2003 Álvarez I, Wendel JF. Ribosomal ITS sequences and plant phylogenetic inference Molecular Phylogenetics and Evolution. 29: 417-434. PMID 14615184 DOI: 10.1016/S1055-7903(03)00208-2  1
2003 Liu B, Wendel JF. Epigenetic phenomena and the evolution of plant allopolyploids. Molecular Phylogenetics and Evolution. 29: 365-79. PMID 14615180 DOI: 10.1016/S1055-7903(03)00213-6  1
2003 Senchina DS, Alvarez I, Cronn RC, Liu B, Rong J, Noyes RD, Paterson AH, Wing RA, Wilkins TA, Wendel JF. Rate variation among nuclear genes and the age of polyploidy in Gossypium. Molecular Biology and Evolution. 20: 633-43. PMID 12679546 DOI: 10.1093/Molbev/Msg065  1
2003 Adams KL, Cronn R, Percifield R, Wendel JF. Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proceedings of the National Academy of Sciences of the United States of America. 100: 4649-54. PMID 12665616 DOI: 10.1073/Pnas.0630618100  1
2003 Cedroni ML, Cronn RC, Adams KL, Wilkins TA, Wendel JF. Evolution and expression of MYB genes in diploid and polyploid cotton. Plant Molecular Biology. 51: 313-25. PMID 12602863 DOI: 10.1023/A:1022051100610  1
2002 Cronn RC, Small RL, Haselkorn T, Wendel JF. Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. American Journal of Botany. 89: 707-25. PMID 21665671 DOI: 10.3732/Ajb.89.4.707  1
2002 Cronn R, Cedroni M, Haselkorn T, Grover C, Wendel JF. PCR-mediated recombination in amplification products derived from polyploid cotton. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 104: 482-489. PMID 12582722 DOI: 10.1007/S001220100741  1
2002 Wendel JF, Cronn RC, Alvarez I, Liu B, Small RL, Senchina DS. Intron size and genome size in plants. Molecular Biology and Evolution. 19: 2346-52. PMID 12446829 DOI: 10.1093/Oxfordjournals.Molbev.A004062  1
2002 Wendel JF, Cronn RC, Johnston JS, Price HJ. Feast and famine in plant genomes. Genetica. 115: 37-47. PMID 12188047 DOI: 10.1023/A:1016020030189  1
2002 Small RL, Wendel JF. Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium). Molecular Biology and Evolution. 19: 597-607. PMID 11961094 DOI: 10.1093/Oxfordjournals.Molbev.A004119  1
2002 Liu B, Wendel JF. Non-mendelian phenomena in allopolyploid genome evolution Current Genomics. 3: 489-505. DOI: 10.2174/1389202023350255  1
2001 Liu B, Brubaker CL, Mergeai G, Cronn RC, Wendel JF. Polyploid formation in cotton is not accompanied by rapid genomic changes Genome. 44: 321-330. PMID 11444689 DOI: 10.1139/G01-011  1
2001 Applequist WL, Cronn R, Wendel JF. Comparative development of fiber in wild and cultivated cotton Evolution and Development. 3: 3-17. PMID 11256432 DOI: 10.1046/J.1525-142X.2001.00079.X  1
2001 Liu B, Wendel JF. Intersimple sequence repeat (ISSR) polymorphisms as a genetic marker system in cotton Molecular Ecology Notes. 1: 205-208. DOI: 10.1046/J.1471-8278.2001.00073.X  1
2001 Wendel JF, Cronn RC. Polyploidy and the evolutionary history of cotton Advances in Agronomy. 78: 139-186. DOI: 10.1016/S0065-2113(02)78004-8  1
2000 Liu B, Wendel JF. Retrotransposon activation followed by rapid repression in introgressed rice plants Genome. 43: 874-880. PMID 11081978 DOI: 10.1139/Gen-43-5-874  1
2000 Small RL, Wendel JF. Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium) Genetics. 155: 1913-1926. PMID 10924485  1
2000 Small RL, Wendel JF. Phylogeny, duplication, and intraspecific variation of Adh sequences in new world diploid cottons (Gossypium L., Malvaceae) Molecular Phylogenetics and Evolution. 16: 73-84. PMID 10877941 DOI: 10.1006/Mpev.1999.0750  1
2000 Wendel JF, Wessler SR. Retrotransposon-mediated genome evolution on a local ecological scale. Proceedings of the National Academy of Sciences of the United States of America. 97: 6250-2. PMID 10841529 DOI: 10.1073/Pnas.97.12.6250  1
2000 Pan Q, Wendel J, Fluhr R. Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes Journal of Molecular Evolution. 50: 203-213. PMID 10754062 DOI: 10.1007/S002399910023  1
2000 Hanson RE, Islam-Faridi MN, Crane CF, Zwick MS, Czeschin DG, Wendel JF, McKnight TD, Price HJ, Stelly DM. Ty1-copia-retrotransposon behavior in a polyploid cotton Chromosome Research. 8: 73-76. PMID 10730591 DOI: 10.1023/A:1009239522541  1
2000 Wendel JF. Genome evolution in polyploids Plant Molecular Biology. 42: 225-249. PMID 10688139 DOI: 10.1023/A:1006392424384  1
2000 O'Brien SJ, Andersson L, Angus R, Bloom SE, Bowling A, Collier GE, Copeland N, Crittenden L, Davisson MT, Gabay-Laughnan S, Gustafson JP, Hamrick JL, Honeycutt R, Jauhar PP, Knap HT, ... ... Wendel JF, et al. Milestones Journal of Heredity. 91: iii.  1
1999 Cronn RC, Small RL, Wendel JF. Duplicated genes evolve independently after polyploid formation in cotton Proceedings of the National Academy of Sciences of the United States of America. 96: 14406-14411. PMID 10588718 DOI: 10.1073/Pnas.96.25.14406  1
1999 Small RL, Ryburn JA, Wendel JF. Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.) Molecular Biology and Evolution. 16: 491-501. PMID 10331275 DOI: 10.1093/Oxfordjournals.Molbev.A026131  1
1999 Small RL, Wendel JF. The mitochondrial genome of allotetraploid cotton (Gossypium L.) Journal of Heredity. 90: 251-253. PMID 9987935 DOI: 10.1093/jhered/90.1.251  1
1999 Seelanan T, Brubaker CL, Stewart JM, Craven LA, Wendel JF. Molecular systematics of Australian Gossypium section Grandicalyx (Malvaceae) Systematic Botany. 24: 183-208. DOI: 10.2307/2419548  1
1999 Brubaker CL, Paterson AH, Wendel JF. Comparative genetic mapping of allotetraploid cotton and its diploid progenitors Genome. 42: 184-203. DOI: 10.1139/G98-118  1
1999 Huang L, Millet E, Rong J, Wendel JF, Anikster Y, Feldman M. Restriction fragment length polymorphism in wild and cultivated tetraploid wheat Israel Journal of Plant Sciences. 47: 213-224. DOI: 10.1080/07929978.1999.10676776  1
1998 Davis JI, Simmons MP, Stevenson DW, Wendel JF. Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences. Systematic Biology. 47: 282-310. PMID 12064229 DOI: 10.1080/106351598260923  1
1998 Baum DA, Small RL, Wendel JF. Biogeography and floral evolution of baobabs (Adansonia, Bombacaceae) as inferred from multiple data sets. Systematic Biology. 47: 181-207. PMID 12064226 DOI: 10.1080/106351598260879  1
1998 Zhao XP, Si Y, Hanson RE, Crane CF, Price HJ, Stelly DM, Wendel JF, Paterson AH. Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton Genome Research. 8: 479-492. PMID 9582192 DOI: 10.1101/Gr.8.5.479  1
1998 Small RL, Ryburn JA, Cronn RC, Seelanan T, Wendel JF. The tortoise and the hare: Choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group American Journal of Botany. 85: 1301-1315. DOI: 10.2307/2446640  1
1998 Schnabel A, Wendel JF. Cladistic biogeography of Gleditsia (Leguminosae) based on ndhF and rpl16 chloroplast gene sequences American Journal of Botany. 85: 1753-1765. DOI: 10.2307/2446510  1
1998 Cronn R, Wendel JF. Simple methods for isolating homoeologous loci from allopolyploid genomes Genome. 41: 756-762. DOI: 10.1139/G98-078  1
1997 Zhang W, Wendel JF, Clark LG. Bamboozled Again! Inadvertent Isolation of Fungal rDNA Sequences from Bamboos (Poaceae: Bambusoideae) Molecular Phylogenetics and Evolution. 8: 205-217. PMID 9299225 DOI: 10.1006/Mpev.1997.0422  1
1997 Gaut BS, Clark LG, Wendel JF, Muse SV. Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae). Molecular Biology and Evolution. 14: 769-77. PMID 9214750 DOI: 10.1093/Oxfordjournals.Molbev.A025817  1
1997 Seelanan T, Schnabel A, Wendel JF. Congruence and consensus in the cotton tribe (Malvaceae) Systematic Botany. 22: 259-290. DOI: 10.2307/2419457  1
1997 Paterson AH, Lan TH, Reischmann KP, Chang C, Lin YR, Liu S.- C, Burow MD, Kowalski SP, Katsar CS, DelMonte TA, Feldmann KA, Schertz KF, Wendel JF. Erattum: Toward a unified genetic map of higher plants, transcending the monocot-dicot divergence (Nature Genetics (1996) 14 (380-382)) Nature Genetics. 15: 322. DOI: 10.1038/Ng0397-322  1
1997 Cronn R, Brothers M, Klier K, Bretting PK, Wendel JF. Allozyme variation in domesticated annual sunflower and its wild relatives Theoretical and Applied Genetics. 95: 532-545. DOI: 10.1007/S001220050594  1
1996 Paterson AH, Lan TH, Reischmann KP, Chang C, Lin YR, Liu S.- C, Burow MD, Kowalski SP, Katsar CS, DelMonte TA, Feldmann KA, Schertz KF, Wendel JF. Toward a unified genetic map of higher plants, transcending the monocot- dicot divergence Nature Genetics. 14: 380-382. PMID 8944014 DOI: 10.1038/Ng1296-380  1
1996 Kelchner SA, Wendel JF. Hairpins create minute inversions in non coding regions of chloroplast DNA Current Genetics. 30: 259-262. PMID 8753656 DOI: 10.1007/S002940050130  1
1996 Cronn RC, Zhao X, Paterson AH, Wendel JF. Polymorphism and concerted evolution in a tandemly repeated gene family: 5S ribosomal DNA in diploid and allopolyploid cottons Journal of Molecular Evolution. 42: 685-705. PMID 8662014 DOI: 10.1007/Bf02338802  1
1995 Wendel JF, Schnabel A, Seelanan T. An Unusual Ribosomal DNA Sequence from Gossypium gossypioides Reveals Ancient, Cryptic, Intergenomic Introgression Molecular Phylogenetics and Evolution. 4: 298-313. PMID 8845966 DOI: 10.1006/Mpev.1995.1027  1
1995 Wendel JF, Schnabel A, Seelanan T. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium) Proceedings of the National Academy of Sciences of the United States of America. 92: 280-284. PMID 7816833 DOI: 10.1073/Pnas.92.1.280  1
1995 Clark LG, Zhang Weiping, Wendel JF. A phylogeny of the grass family (Poaceae) based on ndhF sequence data Systematic Botany. 20: 436-460. DOI: 10.2307/2419803  1
1995 Altenbach S, Anderson O, Bigwood D, Cantinhour S, Coe E, Datko A, Heller S, Kaleikau E, McCouch S, Kohel R, Miksche J, Moore P, Neale D, Osborne T, Paterson A, ... ... Wendel JF, et al. USDA Plant Genome Research Program Advances in Agronomy. 55: 113-166. DOI: 10.1016/S0065-2113(08)60539-8  0.01
1995 Wang Rong-Lin, Wendel JF, Dekker JH. Weedy adaptation in Setaria spp. I. Isozyme analysis of genetic diversity and population genetic structure in Setaria viridis American Journal of Botany. 82: 308-317. DOI: 10.1002/J.1537-2197.1995.Tb12635.X  1
1995 Wang Rong-Lin, Wendel JF, Dekker JH. Weedy adaptation in Setaria spp. II. Genetic diversity and population genetic structure in S. glauca, S. geniculata, and S. faberii (Poaceae) American Journal of Botany. 82: 1031-1039. DOI: 10.1002/J.1537-2197.1995.Tb11568.X  1
1994 Reinisch AJ, Dong JM, Brubaker CL, Stelly DM, Wendel JF, Paterson AH. A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: Chromosome organization and evolution in a disomic polyploid genome Genetics. 138: 829-847. PMID 7851778  1
1994 Stanton MA, Stewart JM, Percival AE, Wendel JF. Morphological diversity and relationships in the A-genome cottons, Gossypium arboreum and G.herbaceum Crop Science. 34: 519-527. DOI: 10.2135/Cropsci1994.0011183X003400020039X  1
1994 Wendel JF, Rowley R, Stewart JM. Genetic diversity in and phylogenetic relationships of the Brazilian endemic cotton, Gossypium mustelinum (Malvaceae) Plant Systematics and Evolution. 192: 49-59. DOI: 10.1007/Bf00985907  1
1994 Parks CR, Wendel JF, Sewell MM, Qiu Yin Long. The significance of allozyme variation and introgression in the Liriodendron tulipifera complex (Magnoliaceae) American Journal of Botany. 81: 878-889. DOI: 10.1002/J.1537-2197.1994.Tb15569.X  1
1994 Brubaker CL, Wendel JF. Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs) American Journal of Botany. 81: 1309-1326. DOI: 10.1002/J.1537-2197.1994.Tb11453.X  1
1993 VanderWiel PL, Voytas DF, Wendel JF. Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.) Journal of Molecular Evolution. 36: 429-447. PMID 7685393 DOI: 10.1007/Bf02406720  1
1993 Paterson AH, Brubaker CL, Wendel JF. A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis Plant Molecular Biology Reporter. 11: 122-127. DOI: 10.1007/Bf02670470  1
1993 Brubaker CL, Wendel JF. On the specific status of Gossypium lanceolatum Todaro Genetic Resources and Crop Evolution. 40: 165-170. DOI: 10.1007/Bf00051121  1
1993 Brubaker CL, Koontz JA, Wendel JF. Bidirectional cytoplasmic and nuclear introgression in the New World cottons, Gossypium barbadense and G.hirsutum (Malvaceae) American Journal of Botany. 80: 1203-1208. DOI: 10.1002/J.1537-2197.1993.Tb15353.X  1
1992 Wendel JF, Albert VA. Phylogenetics of the Cotton Genus (Gossypium): Character-State Weighted Parsimony Analysis of Chloroplast-DNA Restriction Site Data and Its Systematic and Biogeographic Implications Systematic Botany. 17: 115-143. DOI: 10.2307/2419069  0.01
1992 DeJoode DR, Wendel JF. Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum American Journal of Botany. 79: 1311-1319. DOI: 10.1002/J.1537-2197.1992.Tb13735.X  0.01
1991 Wendel JF, Stewart JM, Rettig JH. MOLECULAR EVIDENCE FOR HOMOPLOID RETICULATE EVOLUTION AMONG AUSTRALIAN SPECIES OF GOSSYPIUM. Evolution; International Journal of Organic Evolution. 45: 694-711. PMID 28568839 DOI: 10.1111/J.1558-5646.1991.Tb04339.X  1
1991 Klier K, Leoschke MJ, Wendel JF. Hybridization and introgression in white and yellow ladyslipper orchids (Cypripedium candidum and C. pubescens) Journal of Heredity. 82: 305-318. DOI: 10.1093/Oxfordjournals.Jhered.A111091  1
1990 Percy RG, Wendel JF. Allozyme evidence for the origin and diversification of Gossypium barbadense L. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 79: 529-42. PMID 24226459 DOI: 10.1007/Bf00226164  1
1990 Doebley J, Stec A, Wendel J, Edwards M. Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize. Proceedings of the National Academy of Sciences of the United States of America. 87: 9888-9892. PMID 11607138 DOI: 10.1073/Pnas.87.24.9888  0.01
1990 Parks CR, Wendel JF, Sewell MM, Qiu YL. Genetic control of isozyme variation in the genus liriodendron L. (magnoliaceae) Journal of Heredity. 81: 317-323. DOI: 10.1093/Oxfordjournals.Jhered.A110996  1
1990 Wendel JF, Percy RG. Allozyme diversity and introgression in the Galapagos Islands endemic Gossypium darwinii and its relationship to continental G. barbadense Biochemical Systematics and Ecology. 18: 517-528. DOI: 10.1016/0305-1978(90)90123-W  1
1990 Wendel JF, Percival AE. Molecular divergence in the Galapagos Islands-Baja California species pair, Gossypium klotzschianum and G. davidsonii (Malvaceae) Plant Systematics and Evolution. 171: 99-115. DOI: 10.1007/Bf00940598  1
1989 Wendel JF, Stuber CW, Goodman MM, Beckett JB. Duplicated plastid and triplicated cytosolic isozymes of triosephosphate isomerase in maize (Zea Mays L.) Journal of Heredity. 80: 218-228. PMID 2732453 DOI: 10.1093/Oxfordjournals.Jhered.A110839  1
1989 Wendel JF, Olson PD, Stewart JM. Genetic Diversity, Introgression, And Independent Domestication Of Old World Cultivated Cottons American Journal of Botany. 76: 1795-1806. DOI: 10.1002/J.1537-2197.1989.Tb15169.X  1
1988 Wendel JF, Goodman MM, Stuber CW, Beckett JB. New isozyme systems for maize (Zea mays L.): Aconitate hydratase, adenylate kinase, NADH dehydrogenase, and shikimate dehydrogenase Biochemical Genetics. 26: 421-445. PMID 2850791 DOI: 10.1007/Bf02401795  1
1987 Edwards MD, Stuber CW, Wendel JF. Molecular-marker-facilitated investigations of quantitative-trait loci in maize. I. Numbers, genomic distribution and types of gene action Genetics. 116: 113-125. PMID 3596228  1
1987 Wendel JF, Edwards MD, Stuber CW. Evidence for multilocus genetic control of preferential fertilisation in maize Heredity. 58: Pt 2/-. PMID 3471740 DOI: 10.1038/Hdy.1987.44  1
1986 Wendel JF, Stuber CW, Edwards MD, Goodman MM. Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes Theoretical and Applied Genetics. 72: 178-185. DOI: 10.1007/Bf00266990  1
1985 Wendel JF, Parks CR. Genetic diversity and population structure in Camellia japonica L. ( Theaceae) American Journal of Botany. 72: 52-65. DOI: 10.1002/J.1537-2197.1985.Tb05344.X  1
1984 Wendel JF, Parks CR. Distorted segregation and linkage of alcohol dehydrogenase genes in Camellia japonica L. (Theacease) Biochemical Genetics. 22: 739-748. PMID 6388563 DOI: 10.1007/Bf00485857  1
1984 Wendel JF. Electrophoretic identification of polyploid Camellia japonica (Theaceae) cultivars and evidence for their sexual origin Plant Systematics and Evolution. 145: 223-226. DOI: 10.1007/Bf00983950  1
1983 Suiter KA, Wendel JF, Case JS. LINKAGE-1: a PASCAL computer program for the detection and analysis of genetic linkage. The Journal of Heredity. 74: 203-4. PMID 6863896 DOI: 10.1093/Oxfordjournals.Jhered.A109766  1
1982 Wendel JF, Parks CR. Genetic control of isozyme variation in Camellia japonica L Journal of Heredity. 73: 197-204. DOI: 10.1093/Oxfordjournals.Jhered.A109617  1
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