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Chengjun Zhang - Publications

Affiliations: 
Botany Chinese Academic Science Kunming Institute of Botany  
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Yang T, Cai Y, Huang T, Yang D, Yang X, Yin X, Zhang C, Yang Y, Yang Y. A telomere-to-telomere gap-free reference genome assembly of avocado provides useful resources for identifying genes related to fatty acid biosynthesis and disease resistance. Horticulture Research. 11: uhae119. PMID 38966866 DOI: 10.1093/hr/uhae119  0.393
2024 Ye Q, Zhang L, Li Q, Ji Y, Zhou Y, Wu Z, Hu Y, Ma Y, Wang J, Zhang C. Genome and GWAS analysis identified genes significantly related to phenotypic state of bark. Horticulture Research. 11: uhae008. PMID 38487544 DOI: 10.1093/hr/uhae008  0.398
2023 Wu X, Zhang L, Wang X, Zhang R, Jin G, Hu Y, Yang H, Wu Z, Ma Y, Zhang C, Wang J. Evolutionary history of two evergreen species as revealed by chromosome-level genome assembly. Frontiers in Plant Science. 14: 1123707. PMID 37025132 DOI: 10.3389/fpls.2023.1123707  0.331
2022 Chen W, Wan H, Liu F, Du H, Zhang C, Fan W, Zhu A. Rapid evolution of genes in linked to multiple transitions from self-incompatibility to self-compatibility. Plant Diversity. 45: 219-228. PMID 37069931 DOI: 10.1016/j.pld.2022.04.003  0.428
2022 Zhou Y, Zhang C, Zhang L, Ye Q, Liu N, Wang M, Long G, Fan W, Long M, Wing RA. Gene fusion as an important mechanism to generate new genes in the genus Oryza. Genome Biology. 23: 130. PMID 35706016 DOI: 10.1186/s13059-022-02696-w  0.745
2022 Zheng Z, Lan X, Wang Q, Zhang C, Huang G, Zhang J, Wang H. Draft Genome Sequence of Bacillus thuringiensis ZZQ-130 with Multiple Pesticidal Genes, Isolated from Caka Salt Lake, China. Microbiology Resource Announcements. 11: e0088721. PMID 35142556 DOI: 10.1128/mra.00887-21  0.48
2021 Hu Y, Wu X, Jin G, Peng J, Leng R, Li L, Gui D, Fan C, Zhang C. Rapid Genome Evolution and Adaptation of Mediated by Recurrent RNA-Based and Tandem Gene Duplications. Frontiers in Plant Science. 12: 772655. PMID 35058947 DOI: 10.3389/fpls.2021.772655  0.754
2021 Jin G, Ma PF, Wu X, Gu L, Long M, Zhang C, Li DZ. New Genes Interacted with Recent Whole Genome Duplicates in the Fast Stem Growth of Bamboos. Molecular Biology and Evolution. PMID 34581782 DOI: 10.1093/molbev/msab288  0.649
2021 Wang X, Gao Y, Wu X, Wen X, Li D, Zhou H, Li Z, Liu B, Wei J, Chen F, Chen F, Zhang C, Zhang L, Xia Y. High-quality evergreen azalea genome reveals tandem duplication-facilitated low-altitude adaptability and floral scent evolution. Plant Biotechnology Journal. PMID 34375461 DOI: 10.1111/pbi.13680  0.407
2021 Liu N, Zhang L, Zhou Y, Tu M, Wu Z, Gui D, Ma Y, Wang J, Zhang C. The Rhododendron Plant Genome Database (RPGD): a comprehensive online omics database for Rhododendron. Bmc Genomics. 22: 376. PMID 34022814 DOI: 10.1186/s12864-021-07704-0  0.356
2021 Fang C, Gan X, Zhang C, He S. The new chimeric chiron genes evolved essential roles in zebrafish embryonic development by regulating NAD levels. Science China. Life Sciences. PMID 33521859 DOI: 10.1007/s11427-020-1851-0  0.407
2019 Zhou Y, Zhang C. Evolutionary patterns of chimeric retrogenes in Oryza species. Scientific Reports. 9: 17733. PMID 31776387 DOI: 10.1038/s41598-019-54085-2  0.492
2019 Zhang L, Ren Y, Yang T, Li G, Chen J, Gschwend AR, Yu Y, Hou G, Zi J, Zhou R, Wen B, Zhang J, Chougule K, Wang M, Copetti D, ... ... Zhang C, et al. Rapid evolution of protein diversity by de novo origination in Oryza. Nature Ecology & Evolution. PMID 30858588 DOI: 10.1038/S41559-019-0822-5  0.73
2019 Jin G, Zhou Y, Yang H, Hu Y, Shi Y, Li L, Siddique AN, Liu C, Zhu A, Zhang C, Li D. Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome Journal of Systematics and Evolution. 59: 341-351. DOI: 10.1111/jse.12548  0.421
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/S41588-018-0261-2  0.666
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/S41588-018-0040-0  0.7
2018 Chen J, Ni P, Li X, Han J, Jakovlić I, Zhang C, Zhao S. Population size may shape the accumulation of functional mutations following domestication. Bmc Evolutionary Biology. 18: 4. PMID 29351740 DOI: 10.1186/s12862-018-1120-6  0.524
2017 Zhang L, Xu P, Cai Y, Ma L, Li S, Li S, Xie W, Song J, Peng L, Yan H, Zou L, Ma Y, Zhang C, Gao Q, Wang J. The draft genome assembly of Rhododendron delavayi Franch. var. delavayi. Gigascience. 6: 1-11. PMID 29020749 DOI: 10.1093/gigascience/gix076  0.448
2017 Zhu Y, Chen L, Zhang C, Hao P, Jing X, Li X. Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii. Bmc Genomics. 18: 1042. PMID 28198676 DOI: 10.1186/s12864-016-3266-1  0.356
2015 Zhang C, Yang H, Yang H. Evolutionary Character of Alternative Splicing in Plants. Bioinformatics and Biology Insights. 9: 47-52. PMID 26819552 DOI: 10.4137/BBI.S33716  0.456
2014 Zhang C, Gschwend AR, Ouyang Y, Long M. Evolution of gene structural complexity: an alternative-splicing-based model accounts for intron-containing retrogenes. Plant Physiology. 165: 412-23. PMID 24520158 DOI: 10.1104/Pp.113.231696  0.755
2013 Zhang C, Wang J, Marowsky NC, Long M, Wing RA, Fan C. High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution. 5: 1038-48. PMID 23651622 DOI: 10.1093/Gbe/Evt071  0.771
2013 Zhang C, Wang J, Long M, Fan C. gKaKs: the pipeline for genome-level Ka/Ks calculation. Bioinformatics (Oxford, England). 29: 645-6. PMID 23314322 DOI: 10.1093/Bioinformatics/Btt009  0.742
2012 Zhou G, Chen Y, Yao W, Zhang C, Xie W, Hua J, Xing Y, Xiao J, Zhang Q. Genetic composition of yield heterosis in an elite rice hybrid. Proceedings of the National Academy of Sciences of the United States of America. 109: 15847-52. PMID 23019369 DOI: 10.1073/Pnas.1214141109  0.305
2012 Hu Y, Liu D, Zhong X, Zhang C, Zhang Q, Zhou DX. CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome. Proceedings of the National Academy of Sciences of the United States of America. 109: 5773-8. PMID 22451926 DOI: 10.1073/Pnas.1203148109  0.301
2011 Zhang C, Wang J, Xie W, Zhou G, Long M, Zhang Q. Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method. Proceedings of the National Academy of Sciences of the United States of America. 108: 7860-5. PMID 21521791 DOI: 10.1073/Pnas.1018621108  0.42
2011 Du H, Ouyang Y, Zhang C, Zhang Q. Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives. The New Phytologist. 191: 275-87. PMID 21443693 DOI: 10.1111/J.1469-8137.2011.03691.X  0.324
2009 Xie W, Chen Y, Zhou G, Wang L, Zhang C, Zhang J, Xiao J, Zhu T, Zhang Q. Single feature polymorphisms between two rice cultivars detected using a median polish method. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 119: 151-64. PMID 19370320 DOI: 10.1007/S00122-009-1025-2  0.377
2008 Gupta M, Qiu X, Wang L, Xie W, Zhang C, Xiong L, Lian X, Zhang Q. KT/HAK/KUP potassium transporters gene family and their whole-life cycle expression profile in rice (Oryza sativa). Molecular Genetics and Genomics : Mgg. 280: 437-52. PMID 18810495 DOI: 10.1007/S00438-008-0377-7  0.327
2008 Nuruzzaman M, Gupta M, Zhang C, Wang L, Xie W, Xiong L, Zhang Q, Lian X. Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular Genetics and Genomics : Mgg. 280: 139-51. PMID 18491141 DOI: 10.1007/S00438-008-0351-4  0.402
2008 Nayidu NK, Wang L, Xie W, Zhang C, Fan C, Lian X, Zhang Q, Xiong L. Comprehensive sequence and expression profile analysis of PEX11 gene family in rice. Gene. 412: 59-70. PMID 18291602 DOI: 10.1016/J.Gene.2008.01.006  0.696
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