| Year |
Citation |
Score |
| 2024 |
Zhou W, Johnson BK, Morrison J, Beddows I, Eapen J, Katsman E, Semwal A, Habib WA, Heo L, Laird PW, Berman BP, Triche TJ, Shen H. BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Nucleic Acids Research. PMID 38412294 DOI: 10.1093/nar/gkae097 |
0.662 |
|
| 2022 |
Katsman E, Orlanski S, Martignano F, Fox-Fisher I, Shemer R, Dor Y, Zick A, Eden A, Petrini I, Conticello SG, Berman BP. Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing. Genome Biology. 23: 158. PMID 35841107 DOI: 10.1186/s13059-022-02710-1 |
0.388 |
|
| 2021 |
Unterman I, Bloch I, Cazacu S, Kazimirsky G, Ben-Zeev B, Berman BP, Brodie C, Tabach Y. Expanding the MECP2 network using comparative genomics reveals potential therapeutic targets for Rett syndrome. Elife. 10. PMID 34355696 DOI: 10.7554/eLife.67085 |
0.306 |
|
| 2021 |
Zheng Y, Huang G, Silva TC, Yang Q, Jiang YY, Koeffler HP, Lin DC, Berman BP. A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes. Nature Communications. 12: 2485. PMID 33931649 DOI: 10.1038/s41467-021-22720-0 |
0.337 |
|
| 2021 |
Carrot-Zhang J, Yao X, Devarakonda S, Deshpande A, Damrauer JS, Silva TC, Wong CK, Choi HY, Felau I, Robertson AG, Castro MAA, Bao L, Rheinbay E, Liu EM, Trieu T, ... ... Berman BP, et al. Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway. Cell Reports. 34: 108784. PMID 33626341 DOI: 10.1016/j.celrep.2021.108784 |
0.617 |
|
| 2021 |
Carrot-Zhang J, Yao X, Devarakonda S, Deshpande A, Damrauer JS, Silva TC, Wong CK, Choi HY, Felau I, Robertson AG, Castro MAA, Bao L, Rheinbay E, Liu EM, Trieu T, ... ... Berman BP, et al. Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway. Cell Reports. 34: 108707. PMID 33535033 DOI: 10.1016/j.celrep.2021.108707 |
0.678 |
|
| 2020 |
Jones MR, Peng PC, Coetzee SG, Tyrer J, Reyes ALP, Corona RI, Davis B, Chen S, Dezem F, Seo JH, Kar S, Dareng E, Berman BP, Freedman ML, et al. Ovarian Cancer Risk Variants Are Enriched in Histotype-Specific Enhancers and Disrupt Transcription Factor Binding Sites. American Journal of Human Genetics. PMID 32946763 DOI: 10.1016/J.Ajhg.2020.08.021 |
0.425 |
|
| 2020 |
Corona RI, Seo JH, Lin X, Hazelett DJ, Reddy J, Fonseca MAS, Abassi F, Lin YG, Mhawech-Fauceglia PY, Shah SP, Huntsman DG, Gusev A, Karlan BY, Berman BP, Freedman ML, et al. Non-coding somatic mutations converge on the PAX8 pathway in ovarian cancer. Nature Communications. 11: 2020. PMID 32332753 DOI: 10.1038/S41467-020-15951-0 |
0.399 |
|
| 2020 |
Pan J, Silva TC, Gull N, Yang Q, Plummer JT, Chen S, Daigo K, Hamakubo T, Gery S, Ding LW, Jiang YY, Hu S, Xu LY, Li EM, Ding Y, ... ... Berman BP, et al. Lineage-specific epigenomic and genomic activation of oncogene HNF4A promotes gastrointestinal adenocarcinomas. Cancer Research. PMID 32332020 DOI: 10.1158/0008-5472.Can-20-0390 |
0.5 |
|
| 2019 |
Reyes ALP, Silva TC, Coetzee SG, Plummer JT, Davis BD, Chen S, Hazelett DJ, Lawrenson K, Berman BP, Gayther SA, Jones MR. GENAVi: a shiny web application for gene expression normalization, analysis and visualization. Bmc Genomics. 20: 745. PMID 31619158 DOI: 10.1186/S12864-019-6073-7 |
0.33 |
|
| 2019 |
Chen L, Huang M, Plummer J, Pan J, Jiang YY, Yang Q, Silva TC, Gull N, Chen S, Ding LW, An O, Yang H, Cheng Y, Said JW, Doan N, ... ... Berman BP, et al. Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma. Gut. PMID 31409603 DOI: 10.1136/Gutjnl-2019-318325 |
0.416 |
|
| 2019 |
Gao GF, Parker JS, Reynolds SM, Silva TC, Wang LB, Zhou W, Akbani R, Bailey M, Balu S, Berman BP, Brooks D, Chen H, Cherniack AD, Demchok JA, Ding L, et al. Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data. Cell Systems. 9: 24-34.e10. PMID 31344359 DOI: 10.1016/J.Cels.2019.06.006 |
0.719 |
|
| 2019 |
Fert-Bober J, Venkatraman V, Hunter CL, Liu R, Crowgey EL, Pandey R, Holewinski RJ, Stotland A, Berman BP, Van Eyk JE. Mapping citrullinated sites in multiple organs of mice using hyper-citrullinated library. Journal of Proteome Research. PMID 30990720 DOI: 10.1021/Acs.Jproteome.9B00118 |
0.334 |
|
| 2019 |
Corona RI, Seo J, Hazelett DJ, Lin X, Mhawech-Fauceglia PY, Lester J, Shah SP, Huntsman DG, Karlan BY, Gusev A, Berman BP, Freedman ML, Gayther SA, Lawrenson K. Abstract AP11: IDENTIFYING FUNCTIONAL NONCODING SOMATIC MUTATIONS IN OVARIAN CANCER Clinical Cancer Research. 25. DOI: 10.1158/1557-3265.Ovcasymp18-Ap11 |
0.455 |
|
| 2018 |
Rhie SK, Schreiner S, Witt H, Armoskus C, Lay FD, Camarena A, Spitsyna VN, Guo Y, Berman BP, Evgrafov OV, Knowles JA, Farnham PJ. Using 3D epigenomic maps of primary olfactory neuronal cells from living individuals to understand gene regulation. Science Advances. 4: eaav8550. PMID 30555922 DOI: 10.1126/Sciadv.Aav8550 |
0.393 |
|
| 2018 |
Lin L, Huang M, Shi X, Mayakonda A, Hu K, Jiang YY, Guo X, Chen L, Pang B, Doan N, Said JW, Xie J, Gery S, Cheng X, Lin Z, ... ... Berman BP, et al. Super-enhancer-associated MEIS1 promotes transcriptional dysregulation in Ewing sarcoma in co-operation with EWS-FLI1. Nucleic Acids Research. PMID 30496486 DOI: 10.1093/Nar/Gky1207 |
0.376 |
|
| 2018 |
Silva TC, Coetzee SG, Gull N, Yao L, Hazelett DJ, Noushmehr H, Lin DC, Berman BP. ELMER v.2: An R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles. Bioinformatics (Oxford, England). PMID 30364927 DOI: 10.1093/Bioinformatics/Bty902 |
0.421 |
|
| 2018 |
Corces MR, Granja JM, Shams S, Louie BH, Seoane JA, Zhou W, Silva TC, Groeneveld C, Wong CK, Cho SW, Satpathy AT, Mumbach MR, Hoadley KA, Robertson AG, Sheffield NC, ... ... Berman BP, et al. The chromatin accessibility landscape of primary human cancers. Science (New York, N.Y.). 362. PMID 30361341 DOI: 10.1126/Science.Aav1898 |
0.712 |
|
| 2018 |
Jiang Y, Jiang YY, Xie JJ, Mayakonda A, Hazawa M, Chen L, Xiao JF, Li CQ, Huang ML, Ding LW, Sun QY, Xu L, Kanojia D, Jeitany M, Deng JW, ... ... Berman BP, et al. Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression. Nature Communications. 9: 3619. PMID 30190462 DOI: 10.1038/S41467-018-06081-9 |
0.401 |
|
| 2018 |
Zhou W, Dinh HQ, Ramjan Z, Weisenberger DJ, Nicolet CM, Shen H, Laird PW, Berman BP. DNA methylation loss in late-replicating domains is linked to mitotic cell division. Nature Genetics. PMID 29610480 DOI: 10.1038/S41588-018-0073-4 |
0.73 |
|
| 2018 |
Coetzee SG, Ramjan Z, Dinh HQ, Berman BP, Hazelett DJ. StateHub-StatePaintR: rapid and reproducible chromatin state evaluation for custom genome annotation F1000research. 7: 214. DOI: 10.12688/F1000Research.13535.1 |
0.456 |
|
| 2018 |
Zhou W, Dinh HQ, Ramjan Z, Weisenberger DJ, Nicolet CM, Shen H, Laird PW, Berman BP. Abstract 5327: DNA methylation loss in late-replicating domains is linked to mitotic cell division Cancer Research. 78: 5327-5327. DOI: 10.1158/1538-7445.Am2018-5327 |
0.713 |
|
| 2018 |
Corona RI, Seo J, Hazelett DJ, Lin X, Mhawech-Fauceglia PY, Lester J, Shah S, Huntsman DG, Karlan BY, Berman BP, Freedman ML, Gayther SA, Lawrenson K. Abstract 395: Identifying the functional drivers of noncoding somatic mutations in ovarian cancer Cancer Research. 78: 395-395. DOI: 10.1158/1538-7445.Am2018-395 |
0.452 |
|
| 2018 |
Sabedot T, deCarvalho A, Poisson L, Snyder J, Walbert T, Lee I, Kalkanis S, Berman B, Noushmehr H. GENE-13. GENOMIC FUNCTIONAL ENHANCERS DEFINE POTENTIAL TUMORIGENESIS OF G-CIMP-LOW (IDH-MUTANT ASTROCYTOMA) TUMORS INDEPENDENT OF PROMOTER METHYLATION Neuro-Oncology. 20: vi105-vi105. DOI: 10.1093/Neuonc/Noy148.439 |
0.465 |
|
| 2017 |
Lin DC, Mayakonda A, Dinh HQ, Huang P, Lin L, Liu X, Ding LW, Wang J, Berman B, Song E, Yin D, Koeffler HP. Genomic and epigenomic heterogeneity of hepatocellular carcinoma. Cancer Research. PMID 28302680 DOI: 10.1158/0008-5472.Can-16-2822 |
0.353 |
|
| 2016 |
Hao JJ, Lin DC, Dinh HQ, Mayakonda A, Jiang YY, Chang C, Jiang Y, Lu CC, Shi ZZ, Xu X, Zhang Y, Cai Y, Wang JW, Zhan QM, Wei WQ, ... Berman BP, et al. Spatial intratumoral heterogeneity and temporal clonal evolution in esophageal squamous cell carcinoma. Nature Genetics. PMID 27749841 DOI: 10.1038/Ng.3683 |
0.34 |
|
| 2015 |
Akbarian S, Liu C, Knowles JA, Vaccarino FM, Farnham PJ, Crawford GE, Jaffe AE, Pinto D, Dracheva S, Geschwind DH, Mill J, Nairn AC, Abyzov A, Pochareddy S, Prabhakar S, ... ... Berman BP, et al. The PsychENCODE project. Nature Neuroscience. 18: 1707-1712. PMID 26605881 DOI: 10.1038/Nn.4156 |
0.387 |
|
| 2015 |
Han B, Qu Y, Jin Y, Yu Y, Deng N, Wawrowsky K, Zhang X, Li N, Bose S, Wang Q, Sakkiah S, Abrol R, Jensen TW, Berman BP, Tanaka H, et al. FOXC1 Activates Smoothened-Independent Hedgehog Signaling in Basal-like Breast Cancer. Cell Reports. 13: 1046-1058. PMID 26565916 DOI: 10.1016/J.Celrep.2015.09.063 |
0.338 |
|
| 2015 |
Yao L, Berman BP, Farnham PJ. Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes. Critical Reviews in Biochemistry and Molecular Biology. 1-24. PMID 26446758 DOI: 10.3109/10409238.2015.1087961 |
0.458 |
|
| 2015 |
Yao L, Shen H, Laird PW, Farnham PJ, Berman BP. Inferring regulatory element landscapes and transcription factor networks from cancer methylomes. Genome Biology. 16: 105. PMID 25994056 DOI: 10.1186/S13059-015-0668-3 |
0.712 |
|
| 2015 |
Reizel Y, Spiro A, Sabag O, Skversky Y, Hecht M, Keshet I, Berman BP, Cedar H. Gender-specific postnatal demethylation and establishment of epigenetic memory. Genes & Development. 29: 923-33. PMID 25934504 DOI: 10.1101/Gad.259309.115 |
0.449 |
|
| 2015 |
Lay FD, Liu Y, Kelly TK, Witt H, Farnham PJ, Jones PA, Berman BP. The role of DNA methylation in directing the functional organization of the cancer epigenome. Genome Research. 25: 467-77. PMID 25747664 DOI: 10.1101/Gr.183368.114 |
0.575 |
|
| 2015 |
Berman BP. Abstract 2210: DNA methylation to identify non-coding gene regulatory regions in tumor samples Cancer Research. 75: 2210-2210. DOI: 10.1158/1538-7445.Am2015-2210 |
0.467 |
|
| 2014 |
Yao L, Tak YG, Berman BP, Farnham PJ. Functional annotation of colon cancer risk SNPs. Nature Communications. 5: 5114. PMID 25268989 DOI: 10.1038/Ncomms6114 |
0.426 |
|
| 2014 |
Blattler A, Yao L, Witt H, Guo Y, Nicolet CM, Berman BP, Farnham PJ. Global loss of DNA methylation uncovers intronic enhancers in genes showing expression changes. Genome Biology. 15: 469. PMID 25239471 DOI: 10.1186/S13059-014-0469-0 |
0.417 |
|
| 2014 |
Knijnenburg TA, Ramsey SA, Berman BP, Kennedy KA, Smit AF, Wessels LF, Laird PW, Aderem A, Shmulevich I. Multiscale representation of genomic signals. Nature Methods. 11: 689-94. PMID 24727652 DOI: 10.1038/Nmeth.2924 |
0.728 |
|
| 2014 |
Shi J, Marconett CN, Duan J, Hyland PL, Li P, Wang Z, Wheeler W, Zhou B, Campan M, Lee DS, Huang J, Zhou W, Triche T, Amundadottir L, Warner A, ... ... Berman BP, et al. Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue. Nature Communications. 5: 3365. PMID 24572595 DOI: 10.1038/Ncomms4365 |
0.387 |
|
| 2014 |
Biancolella M, Fortini BK, Tring S, Plummer SJ, Mendoza-Fandino GA, Hartiala J, Hitchler MJ, Yan C, Schumacher FR, Conti DV, Edlund CK, Noushmehr H, Coetzee SG, Bresalier RS, Ahnen DJ, ... ... Berman BP, et al. Identification and characterization of functional risk variants for colorectal cancer mapping to chromosome 11q23.1. Human Molecular Genetics. 23: 2198-209. PMID 24256810 DOI: 10.1093/Hmg/Ddt584 |
0.355 |
|
| 2014 |
Capone S, Triche TJ, In G, Weisenberger DJ, Berman BP, Ramsingh G. Whole-genome bisulfite sequencing of a complex karyotype AML and identification of regulatory aberrations distinct from normal karyotype AML. Journal of Clinical Oncology. 32: 11075-11075. DOI: 10.1200/Jco.2014.32.15_Suppl.11075 |
0.397 |
|
| 2013 |
Marconett CN, Zhou B, Rieger ME, Selamat SA, Dubourd M, Fang X, Lynch SK, Stueve TR, Siegmund KD, Berman BP, Borok Z, Laird-Offringa IA. Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation. Plos Genetics. 9: e1003513. PMID 23818859 DOI: 10.1371/Journal.Pgen.1003513 |
0.384 |
|
| 2012 |
Kelly TK, Liu Y, Lay FD, Liang G, Berman BP, Jones PA. Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules. Genome Research. 22: 2497-506. PMID 22960375 DOI: 10.1101/Gr.143008.112 |
0.588 |
|
| 2012 |
Liu Y, Siegmund KD, Laird PW, Berman BP. Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data. Genome Biology. 13: R61. PMID 22784381 DOI: 10.1186/Gb-2012-13-7-R61 |
0.705 |
|
| 2012 |
Coetzee SG, Rhie SK, Berman BP, Coetzee GA, Noushmehr H. FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs. Nucleic Acids Research. 40: e139. PMID 22684628 DOI: 10.1093/Nar/Gks542 |
0.411 |
|
| 2012 |
Little GH, Noushmehr H, Baniwal SK, Berman BP, Coetzee GA, Frenkel B. Genome-wide Runx2 occupancy in prostate cancer cells suggests a role in regulating secretion. Nucleic Acids Research. 40: 3538-47. PMID 22187159 DOI: 10.1093/Nar/Gkr1219 |
0.485 |
|
| 2012 |
Chimge NO, Baniwal SK, Luo J, Coetzee S, Khalid O, Berman BP, Tripathy D, Ellis MJ, Frenkel B. Opposing effects of Runx2 and estradiol on breast cancer cell proliferation: in vitro identification of reciprocally regulated gene signature related to clinical letrozole responsiveness. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 18: 901-11. PMID 22147940 DOI: 10.1158/1078-0432.Ccr-11-1530 |
0.388 |
|
| 2012 |
Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, Liu Y, Noushmehr H, Lange CP, van Dijk CM, Tollenaar RA, Van Den Berg D, Laird PW. Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains. Nature Genetics. 44: 40-6. PMID 22120008 DOI: 10.1038/Ng.969 |
0.754 |
|
| 2012 |
Berman BP, Weisenberger DJ, Hinoue T, Noushmehr H, Liu Y, Aman JF, Hinoue T, Shen H, Malik S, Mahurkar S, Triche T, Ramjan Z, Nicolet CM, Van Den Berg D, Cope L, et al. Exploring the cancer methylome Bmc Proceedings. 6. DOI: 10.1186/1753-6561-6-S6-O24 |
0.754 |
|
| 2012 |
Noushmehr H, Coetzee SG, Rhie SK, Yan C, Haiman CA, Berman BP, Frenkel B, Coetzee GA. Abstract 1646: Integrative analysis identifies functional prostate cancer risk SNPs in genomic regulatory regions defined as enhancers Cancer Research. 72: 1646-1646. DOI: 10.1158/1538-7445.Am2012-1646 |
0.445 |
|
| 2011 |
Andreu-Vieyra C, Lai J, Berman BP, Frenkel B, Jia L, Jones PA, Coetzee GA. Dynamic nucleosome-depleted regions at androgen receptor enhancers in the absence of ligand in prostate cancer cells. Molecular and Cellular Biology. 31: 4648-62. PMID 21969603 DOI: 10.1128/Mcb.05934-11 |
0.342 |
|
| 2010 |
Kelly TK, Miranda TB, Liang G, Berman BP, Lin JC, Tanay A, Jones PA. H2A.Z maintenance during mitosis reveals nucleosome shifting on mitotically silenced genes. Molecular Cell. 39: 901-11. PMID 20864037 DOI: 10.1016/J.Molcel.2010.08.026 |
0.468 |
|
| 2010 |
Chung TL, Brena RM, Kolle G, Grimmond SM, Berman BP, Laird PW, Pera MF, Wolvetang EJ. Vitamin C promotes widespread yet specific DNA demethylation of the epigenome in human embryonic stem cells. Stem Cells (Dayton, Ohio). 28: 1848-55. PMID 20687155 DOI: 10.1002/Stem.493 |
0.672 |
|
| 2010 |
Berman BP, Frenkel B, Coetzee GA, Jia L. Androgen receptor responsive enhancers are flanked by consistently-positioned H3-acetylated nucleosomes. Cell Cycle (Georgetown, Tex.). 9: 2249-50. PMID 20495358 DOI: 10.4161/Cc.9.11.11621 |
0.453 |
|
| 2010 |
Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, Berman BP, Pan F, Pelloski CE, Sulman EP, Bhat KP, Verhaak RG, Hoadley KA, Hayes DN, Perou CM, Schmidt HK, et al. Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell. 17: 510-22. PMID 20399149 DOI: 10.1016/J.Ccr.2010.03.017 |
0.663 |
|
| 2009 |
Jia L, Landan G, Pomerantz M, Jaschek R, Herman P, Reich D, Yan C, Khalid O, Kantoff P, Oh W, Manak JR, Berman BP, Henderson BE, Frenkel B, Haiman CA, et al. Functional enhancers at the gene-poor 8q24 cancer-linked locus. Plos Genetics. 5: e1000597. PMID 19680443 DOI: 10.1371/Journal.Pgen.1000597 |
0.381 |
|
| 2009 |
Berman BP, Weisenberger DJ, Laird PW. Locking in on the human methylome. Nature Biotechnology. 27: 341-2. PMID 19352369 DOI: 10.1038/Nbt0409-341 |
0.693 |
|
| 2009 |
Berman BP, Frenkel B, Coetzee GA. Location, location, (ChIP-)location! Mapping chromatin landscapes one immunoprecipitation at a time. Journal of Cellular Biochemistry. 107: 1-5. PMID 19308935 DOI: 10.1002/Jcb.22133 |
0.457 |
|
| 2008 |
Jia L, Berman BP, Jariwala U, Yan X, Cogan JP, Walters A, Chen T, Buchanan G, Frenkel B, Coetzee GA. Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity. Plos One. 3: e3645. PMID 18997859 DOI: 10.1371/Journal.Pone.0003645 |
0.493 |
|
| 2007 |
Tomancak P, Berman BP, Beaton A, Weiszmann R, Kwan E, Hartenstein V, Celniker SE, Rubin GM. Global analysis of patterns of gene expression during Drosophila embryogenesis. Genome Biology. 8: R145. PMID 17645804 DOI: 10.1186/Gb-2007-8-7-R145 |
0.754 |
|
| 2004 |
Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE. Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. Genome Biology. 5: R61. PMID 15345045 DOI: 10.1186/Gb-2004-5-9-R61 |
0.766 |
|
| 2003 |
Gelbart WM, Bayraktaroglu L, Bettencourt B, Campbell K, Crosby M, Emmert D, Hradecky P, Huang Y, Letovsky S, Matthews B, Russo S, Schroeder A, Smutniak F, Zhou P, Zytkovics M, ... ... Berman B, et al. The FlyBase database of the Drosophila genome projects and community literature Nucleic Acids Research. 31: 172-175. PMID 12519974 DOI: 10.1093/nar/gkg094 |
0.594 |
|
| 2002 |
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, et al. Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biology. 3: RESEARCH0083. PMID 12537572 DOI: 10.1186/Gb-2002-3-12-Research0083 |
0.737 |
|
| 2002 |
Mungall CJ, Misra S, Berman BP, Carlson J, Frise E, Harris N, Marshall B, Shu S, Kaminker JS, Prochnik SE, Smith CD, Smith E, Tupy JL, Wiel C, Rubin GM, et al. An integrated computational pipeline and database to support whole-genome sequence annotation. Genome Biology. 3: RESEARCH0081. PMID 12537570 DOI: 10.1186/Gb-2002-3-12-Research0081 |
0.605 |
|
| 2002 |
Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, Levine M, Rubin GM, Eisen MB. Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proceedings of the National Academy of Sciences of the United States of America. 99: 757-62. PMID 11805330 DOI: 10.1073/Pnas.231608898 |
0.758 |
|
| 2000 |
Hoskins RA, Nelson CR, Berman BP, Laverty TR, George RA, Ciesiolka L, Naeemuddin M, Arenson AD, Durbin J, David RG, Tabor PE, Bailey MR, DeShazo DR, Catanese J, Mammoser A, et al. A BAC-based physical map of the major autosomes of Drosophila melanogaster. Science (New York, N.Y.). 287: 2271-4. PMID 10731150 DOI: 10.1126/Science.287.5461.2271 |
0.676 |
|
| 2000 |
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, ... ... Berman BP, et al. The genome sequence of Drosophila melanogaster. Science (New York, N.Y.). 287: 2185-95. PMID 10731132 DOI: 10.1126/Science.287.5461.2185 |
0.753 |
|
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