| Year |
Citation |
Score |
| 2023 |
Shook MS, Lu X, Chen X, Parameswaran S, Edsall L, Trimarchi MP, Ernst K, Granitto M, Forney C, Donmez OA, Diouf AA, VonHandorf A, Rothenberg ME, Weirauch MT, Kottyan LC. Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis. American Journal of Human Genetics. PMID 38183988 DOI: 10.1016/j.ajhg.2023.12.008 |
0.307 |
|
| 2023 |
Cain B, Webb J, Yuan Z, Cheung D, Lim HW, Kovall RA, Weirauch MT, Gebelein B. Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data. Nucleic Acids Research. PMID 37114997 DOI: 10.1093/nar/gkad318 |
0.311 |
|
| 2023 |
Cazares TA, Rizvi FW, Iyer B, Chen X, Kotliar M, Bejjani AT, Wayman JA, Donmez O, Wronowski B, Parameswaran S, Kottyan LC, Barski A, Weirauch MT, Prasath VBS, Miraldi ER. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. Plos Computational Biology. 19: e1010863. PMID 36719906 DOI: 10.1371/journal.pcbi.1010863 |
0.308 |
|
| 2022 |
Sawyer RP, Stone HK, Salim H, Lu X, Weirauch MT, Kottyan L. Frontotemporal degeneration genetic risk loci and transcription regulation as a possible mechanistic link to disease risk. Medicine. 101: e31078. PMID 36253972 DOI: 10.1097/MD.0000000000031078 |
0.315 |
|
| 2022 |
Zhao Y, Vartak SV, Conte A, Wang X, Garcia DA, Stevens E, Kyoung Jung S, Kieffer-Kwon KR, Vian L, Stodola T, Moris F, Chopp L, Preite S, Schwartzberg PL, Kulinski JM, ... ... Weirauch MT, et al. "Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes. Molecular Cell. PMID 35863348 DOI: 10.1016/j.molcel.2022.06.029 |
0.363 |
|
| 2022 |
Zhou T, Zhu X, Ye Z, Wang YF, Yao C, Xu N, Zhou M, Ma J, Qin Y, Shen Y, Tang Y, Yin Z, Xu H, Zhang Y, Zang X, ... ... Weirauch MT, et al. Lupus enhancer risk variant causes dysregulation of IRF8 through cooperative lncRNA and DNA methylation machinery. Nature Communications. 13: 1855. PMID 35388006 DOI: 10.1038/s41467-022-29514-y |
0.329 |
|
| 2021 |
Felton JM, Vallabh S, Parameswaran S, Edsall LE, Ernst K, Wronowski B, Malik A, Kotliar M, Weirauch MT, Barski A, Fulkerson PC, Rothenberg ME. Epigenetic Analysis of the Chromatin Landscape Identifies a Repertoire of Murine Eosinophil-Specific PU.1-Bound Enhancers. Journal of Immunology (Baltimore, Md. : 1950). PMID 34330753 DOI: 10.4049/jimmunol.2000207 |
0.366 |
|
| 2021 |
Hass MR, Brissette D, Parameswaran S, Pujato M, Donmez O, Kottyan LC, Weirauch MT, Kopan R. Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets. Plos Genetics. 17: e1009574. PMID 34111109 DOI: 10.1371/journal.pgen.1009574 |
0.344 |
|
| 2021 |
Lu X, Chen X, Forney C, Donmez O, Miller D, Parameswaran S, Hong T, Huang Y, Pujato M, Cazares T, Miraldi ER, Ray JP, de Boer CG, Harley JB, Weirauch MT, et al. Global discovery of lupus genetic risk variant allelic enhancer activity. Nature Communications. 12: 1611. PMID 33712590 DOI: 10.1038/s41467-021-21854-5 |
0.314 |
|
| 2020 |
Elliott KH, Chen X, Salomone J, Chaturvedi P, Schultz PA, Balchand SK, Servetas JD, Zuniga A, Zeller R, Gebelein B, Weirauch MT, Peterson KA, Brugmann SA. Gli3 utilizes Hand2 to synergistically regulate tissue-specific transcriptional networks. Elife. 9. PMID 33006313 DOI: 10.7554/eLife.56450 |
0.35 |
|
| 2020 |
Maezawa S, Sakashita A, Yukawa M, Chen X, Takahashi K, Alavattam KG, Nakata I, Weirauch MT, Barski A, Namekawa SH. Super-enhancer switching drives a burst in gene expression at the mitosis-to-meiosis transition. Nature Structural & Molecular Biology. PMID 32895557 DOI: 10.1038/S41594-020-0488-3 |
0.4 |
|
| 2020 |
Mukherjee S, Chatuverdi P, Rankin SA, Fish MB, Wlizla M, Paraiso KD, MacDonald M, Chen X, Weirauch MT, Blitz IL, Cho KW, Zorn AM. Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. Elife. 9. PMID 32894225 DOI: 10.7554/Elife.58029 |
0.367 |
|
| 2020 |
Stevens ML, Zhang Z, Johansson E, Ray S, Jagpal A, Ruff BP, Kothari A, He H, Martin LJ, Ji H, Wikenheiser-Brokamp K, Weirauch MT, Supp DM, Biagini Myers JM, Khurana Hershey GK. Disease-associated KIF3A variants alter gene methylation and expression impacting skin barrier and atopic dermatitis risk. Nature Communications. 11: 4092. PMID 32796837 DOI: 10.1038/S41467-020-17895-X |
0.305 |
|
| 2020 |
Liu X, Hong T, Parameswaran S, Ernst K, Marazzi I, Weirauch MT, Fuxman Bass JI. Human Virus Transcriptional Regulators. Cell. 182: 24-37. PMID 32649876 DOI: 10.1016/J.Cell.2020.06.023 |
0.369 |
|
| 2020 |
Jennings EC, Korthauer MW, Hendershot JM, Bailey ST, Weirauch MT, Ribeiro JM, Benoit JB. Molecular mechanisms underlying milk production and viviparity in the cockroach, Diploptera punctata. Insect Biochemistry and Molecular Biology. 103333. PMID 32119906 DOI: 10.1016/J.Ibmb.2020.103333 |
0.307 |
|
| 2020 |
Sirvent S, Vallejo AF, Davies J, Clayton K, Wu Z, Woo J, Riddell J, Chaudhri VK, Stumpf P, Nazlamova LA, Wheway G, Rose-Zerilli M, West J, Pujato M, Chen X, ... ... Weirauch MT, et al. Genomic programming of IRF4-expressing human Langerhans cells. Nature Communications. 11: 313. PMID 31949143 DOI: 10.1038/S41467-019-14125-X |
0.38 |
|
| 2020 |
Kottyan LC, Parameswaran S, Weirauch MT, Rothenberg ME, Martin LJ. The genetic etiology of eosinophilic esophagitis. The Journal of Allergy and Clinical Immunology. 145: 9-15. PMID 31910986 DOI: 10.1016/J.Jaci.2019.11.013 |
0.335 |
|
| 2020 |
Emadi B, Carter M, Eswar S, Chen X, Laurynenka V, Parameswaran S, Kaufman KM, Namjou B, Kottyan LC, Weirauch M, Harley J. P136 Epstein-Barr Virus Transcription Co-Factors Bind To Many Inflammatory Bowel Disease Risk Loci Gastroenterology. 158. DOI: 10.1053/J.Gastro.2019.11.142 |
0.349 |
|
| 2020 |
Eapen A, Lu X, Forney C, Parameswaran S, Ray J, Weirauch M, Kottyan L. Massively Parallel Reporter Assays (MPRAs) Identify Allelic Transcriptional Dysregulation in Atopic Dermatitis The Journal of Allergy and Clinical Immunology. 145. DOI: 10.1016/J.Jaci.2019.12.289 |
0.362 |
|
| 2019 |
Yukawa M, Jagannathan S, Vallabh S, Kartashov AV, Chen X, Weirauch MT, Barski A. AP-1 activity induced by co-stimulation is required for chromatin opening during T cell activation. The Journal of Experimental Medicine. PMID 31653690 DOI: 10.1084/Jem.20182009 |
0.36 |
|
| 2019 |
Liu X, Helenius D, Skotte L, Beaumont RN, Wielscher M, Geller F, Juodakis J, Mahajan A, Bradfield JP, Lin FTJ, Vogelezang S, Bustamante M, Ahluwalia TS, Pitkänen N, Wang CA, ... ... Weirauch MT, et al. Variants in the fetal genome near pro-inflammatory cytokine genes on 2q13 associate with gestational duration. Nature Communications. 10: 3927. PMID 31477735 DOI: 10.1038/S41467-019-11881-8 |
0.308 |
|
| 2019 |
Lambert SA, Yang AWH, Sasse A, Cowley G, Albu M, Caddick MX, Morris QD, Weirauch MT, Hughes TR. Similarity regression predicts evolution of transcription factor sequence specificity. Nature Genetics. PMID 31133749 DOI: 10.1038/S41588-019-0411-1 |
0.446 |
|
| 2019 |
Burleson JD, Siniard D, Yadagiri VK, Chen X, Weirauch MT, Ruff BP, Brandt EB, Hershey GKK, Ji H. TET1 contributes to allergic airway inflammation and regulates interferon and aryl hydrocarbon receptor signaling pathways in bronchial epithelial cells. Scientific Reports. 9: 7361. PMID 31089182 DOI: 10.1038/S41598-019-43767-6 |
0.374 |
|
| 2019 |
Chidambaran V, Zhang X, Geisler K, Stubbeman BL, Chen X, Weirauch MT, Meller J, Ji H. Enrichment of genomic pathways based on differential DNA methylation associated with chronic postsurgical pain and anxiety in children - a prospective, pilot study. The Journal of Pain : Official Journal of the American Pain Society. PMID 30639570 DOI: 10.1016/J.Jpain.2018.12.008 |
0.351 |
|
| 2019 |
Miller DE, Forney C, Rochman M, Cranert S, Habel J, Rymer J, Lynch A, Schroeder C, Lee J, Sauder A, Smith Q, Chawla M, Trimarchi MP, Lu X, Fjellman E, ... ... Weirauch MT, et al. Genetic, Inflammatory, and Epithelial Cell Differentiation Factors Control Expression of Human Calpain-14. G3 (Bethesda, Md.). PMID 30626591 DOI: 10.1534/G3.118.200901 |
0.338 |
|
| 2019 |
Eapen A, Parameswaran S, Forney C, Miller D, Donmez O, Dunn K, Chawla M, Sauder A, Fjellman E, Pujato M, Lu X, Chen X, Bernstein DI, Weirauch MT, Nesbitt Kottyan LC. NFκB transcription factor binding is altered at many Atopic Dermatitis disease loci Journal of Allergy and Clinical Immunology. 143: AB65. DOI: 10.1016/J.Jaci.2018.12.199 |
0.412 |
|
| 2018 |
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, ... ... Weirauch MT, et al. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. PMID 30464347 DOI: 10.1038/S41586-018-0734-6 |
0.373 |
|
| 2018 |
Modur V, Singh N, Mohanty V, Chung E, Muhammad B, Choi K, Chen X, Chetal K, Ratner N, Salomonis N, Weirauch MT, Waltz S, Huang G, Privette-Vinnedge L, Park JS, et al. Defective transcription elongation in a subset of cancers confers immunotherapy resistance. Nature Communications. 9: 4410. PMID 30353012 DOI: 10.1038/S41467-018-06810-0 |
0.317 |
|
| 2018 |
Muench DE, Ferchen K, Velu CS, Pradhan K, Chetal K, Chen X, Weirauch MT, Colmenares C, Verma A, Salomonis N, Grimes HL. controls MDS-associated chronic TGFβ signaling, aberrant splicing, and stem cell fitness. Blood. PMID 30249787 DOI: 10.1182/Blood-2018-06-860890 |
0.327 |
|
| 2018 |
Zhang X, Chen X, Weirauch MT, Zhang X, Burleson JD, Brandt EB, Ji H. Diesel exhaust and house dust mite allergen lead to common changes in the airway methylome and hydroxymethylome. Environmental Epigenetics. 4: dvy020. PMID 30090644 DOI: 10.1093/Eep/Dvy020 |
0.377 |
|
| 2018 |
Boni AC, Ambrósio DL, Cupertino FB, Montenegro-Montero A, Virgilio S, Freitas FZ, Corrocher FA, Gonçalves RD, Yang A, Weirauch MT, Hughes TR, Larrondo LF, Bertolini MC. Neurospora crassa developmental control mediated by the FLB-3 transcription factor. Fungal Biology. 122: 570-582. PMID 29801802 DOI: 10.1016/J.Funbio.2018.01.004 |
0.71 |
|
| 2018 |
Zandvakili A, Campbell I, Gutzwiller LM, Weirauch MT, Gebelein B. Degenerate Pax2 and Senseless binding motifs improve detection of low-affinity sites required for enhancer specificity. Plos Genetics. 14: e1007289. PMID 29617378 DOI: 10.1371/Journal.Pgen.1007289 |
0.42 |
|
| 2018 |
Lambert SA, Jolma A, Campitelli LF, Das PK, Yin Y, Albu M, Chen X, Taipale J, Hughes TR, Weirauch MT. The Human Transcription Factors. Cell. 172: 650-665. PMID 29425488 DOI: 10.1016/j.cell.2018.01.029 |
0.387 |
|
| 2018 |
Barreyro L, Sampson A, Hueneman K, Bolanos LC, Pujato M, Chutipongtanate S, Wyder M, Haffey W, Choi K, Neelamraju Y, Smith MA, Niederkorn M, Ramesh V, Muto T, O'Brien E, ... ... Weirauch MT, et al. Therapeutic Targeting of the Ubiquitin Conjugating Enzyme UBE2N in Myeloid Malignancies Blood. 132: 4050-4050. DOI: 10.1182/Blood-2018-99-115359 |
0.313 |
|
| 2018 |
Venkatasubramanian M, Chen X, Chetal K, Kulkarni A, Myers KC, Weirauch MT, Grimes HL, Salomonis N. A Prognostic Human Splicing Signature That Precurses Leukemia Blood. 132: 877-877. DOI: 10.1182/Blood-2018-99-115000 |
0.358 |
|
| 2018 |
Harley J, Chen X, Pujato M, Miller D, Maddox A, Forney C, Magnusen A, Lynch A, Chetal K, Yukawa M, Barski A, Salomonis N, Kaufman K, Kottyan L, Weirauch M. GG-09 A role for EBNA2 in mechanisms that are responsible for lupus and other autoimmune diseases Lupus Science & Medicine. 5. DOI: 10.1136/Lupus-2018-Lsm.96 |
0.348 |
|
| 2018 |
Lummus ZL, Kesavalu B, Kaufman K, Yao J, Weirauch MT, Kottyan LC, Miller D, Cartier A, Cruz M, Lemiere C, Muñoz X, Quirce S, Sastre J, Tarlo SM, Bernstein DI. Regulatory Variants of ATF3, CDH17 and FAM71A are Risk Factors for Diisocyanate Induced Occupational Asthma (DA) Journal of Allergy and Clinical Immunology. 141: AB198. DOI: 10.1016/J.Jaci.2017.12.627 |
0.303 |
|
| 2018 |
Meibers HE, Finch G, Gregg RT, Glenn S, Assani KD, Jennings EC, Davies B, Rosendale AJ, Holmes CJ, Gantz JD, Spacht DE, Lee RE, Denlinger DL, Weirauch MT, Benoit JB. Sex- and developmental-specific transcriptomic analyses of the Antarctic mite, Alaskozetes antarcticus, reveal transcriptional shifts underlying oribatid mite reproduction Polar Biology. 42: 357-370. DOI: 10.1007/S00300-018-2427-X |
0.39 |
|
| 2017 |
Tillo D, Ray S, Syed KS, Gaylor MR, He X, Wang J, Assad N, Durell S, Porollo A, Weirauch MT, Vinson C. The Epstein-Barr virus B-ZIP protein Zta recognizes specific DNA sequences containing 5-methylcytosine and 5-hydroxymethylcytosine. Biochemistry. PMID 29072898 DOI: 10.1021/Acs.Biochem.7B00741 |
0.387 |
|
| 2017 |
Lander JM, Supp DM, He H, Martin LJ, Chen X, Weirauch MT, Boyce ST, Kopan R. Analysis of chromatin accessibility in human epidermis identifies putative barrier dysfunction-sensing enhancers. Plos One. 12: e0184500. PMID 28953906 DOI: 10.1371/Journal.Pone.0184500 |
0.405 |
|
| 2017 |
Lin S, Ptasinska A, Chen X, Shrestha M, Assi SA, Chin PS, Imperato MR, Aronow B, Zhang J, Weirauch MT, Bonifer C, Mulloy JC. A FOXO1-induced oncogenic network defines the AML1-ETO pre-leukemic program. Blood. PMID 28710059 DOI: 10.1182/Blood-2016-11-750976 |
0.35 |
|
| 2017 |
Dauber A, Cunha-Silva M, Macedo DB, Brito VN, Abreu AP, Roberts SA, Montenegro LR, Andrew M, Kirby A, Weirauch MT, Labilloy G, Bessa DS, Carroll RS, Jacobs DC, Chappell PE, et al. Paternally Inherited DLK1 Deletion Associated with Familial Central Precocious Puberty. The Journal of Clinical Endocrinology and Metabolism. PMID 28324015 DOI: 10.1210/Jc.2016-3677 |
0.303 |
|
| 2017 |
Vander Lugt B, Riddell J, Khan AA, Hackney JA, Lesch J, DeVoss J, Weirauch MT, Singh H, Mellman I. Transcriptional determinants of tolerogenic and immunogenic states during dendritic cell maturation. The Journal of Cell Biology. PMID 28130292 DOI: 10.1083/Jcb.201512012 |
0.332 |
|
| 2017 |
Lummus ZL, Kaufman K, Weirauch MT, Cartier A, Cruz M, Kesavalu B, Lemiere C, Muñoz X, Perez-Camo I, Quirce S, Sastre J, Yucesoy B, Bernstein DI. Next Generation DNA Sequencing of Novel Loci in Workers with Diisocyanate Asthma (DA) Journal of Allergy and Clinical Immunology. 139: AB187. DOI: 10.1016/J.Jaci.2016.12.609 |
0.306 |
|
| 2016 |
Fang J, Bolanos LC, Choi K, Liu X, Christie S, Akunuru S, Kumar R, Wang D, Chen X, Greis KD, Stoilov P, Filippi MD, Maciejewski JP, Garcia-Manero G, Weirauch MT, et al. Ubiquitination of hnRNPA1 by TRAF6 links chronic innate immune signaling with myelodysplasia. Nature Immunology. PMID 28024152 DOI: 10.1038/Ni.3654 |
0.331 |
|
| 2016 |
Miller DE, Patel ZH, Lu X, Lynch AT, Weirauch MT, Kottyan LC. Screening for Functional Non-coding Genetic Variants Using Electrophoretic Mobility Shift Assay (EMSA) and DNA-affinity Precipitation Assay (DAPA). Journal of Visualized Experiments : Jove. PMID 27585267 DOI: 10.3791/54093 |
0.405 |
|
| 2016 |
Khund-Sayeed S, He X, Holzberg T, Wang J, Rajagopal D, Upadhyay S, Durell SR, Mukherjee S, Weirauch MT, Rose R, Vinson C. 5-Hydroxymethylcytosine in E-box motifs ACAT|GTG and ACAC|GTG increases DNA-binding of the B-HLH transcription factor TCF4. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 27485769 DOI: 10.1039/C6Ib00079G |
0.372 |
|
| 2016 |
Mao AP, Constantinides MG, Mathew R, Zuo Z, Chen X, Weirauch MT, Bendelac A. Multiple layers of transcriptional regulation by PLZF in NKT-cell development. Proceedings of the National Academy of Sciences of the United States of America. PMID 27325774 DOI: 10.1073/Pnas.1601504113 |
0.379 |
|
| 2016 |
Rialdi A, Campisi L, Zhao N, Lagda AC, Pietzsch C, Ho JS, Martinez-Gil L, Fenouil R, Chen X, Edwards M, Metreveli G, Jordan S, Peralta Z, Munoz-Fontela C, Bouvier N, ... ... Weirauch M, et al. Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation. Science (New York, N.Y.). PMID 27127234 DOI: 10.1126/Science.Aad7993 |
0.334 |
|
| 2016 |
Patel Z, Weirauch M, Kottyan LC, Harley JB. GG-03 STAT1-STAT4 association with systemic lupus erythematosus (SLE) Lupus Science & Medicine. 3. DOI: 10.1136/Lupus-2016-000179.55 |
0.461 |
|
| 2015 |
Chen X, Ernst K, Soman F, Borowczak M, Weirauch MT. CressInt: a user-friendly web resource for genome-scale exploration of gene regulation in Arabidopsis thaliana. Current Plant Biology. 3: 48-55. PMID 26855883 DOI: 10.1016/J.Cpb.2015.09.001 |
0.431 |
|
| 2015 |
Bouffi C, Kartashov AV, Schollaert KL, Chen X, Bacon WC, Weirauch MT, Barski A, Fulkerson PC. Transcription Factor Repertoire of Homeostatic Eosinophilopoiesis. Journal of Immunology (Baltimore, Md. : 1950). 195: 2683-95. PMID 26268651 DOI: 10.4049/Jimmunol.1500510 |
0.459 |
|
| 2015 |
Hass MR, Liow HH, Chen X, Sharma A, Inoue YU, Inoue T, Reeb A, Martens A, Fulbright M, Raju S, Stevens M, Boyle S, Park JS, Weirauch MT, Brent MR, et al. SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers. Molecular Cell. 59: 685-97. PMID 26257285 DOI: 10.1016/J.Molcel.2015.07.008 |
0.306 |
|
| 2015 |
He X, Syed KS, Tillo D, Mann I, Weirauch MT, Vinson C. GABPα Binding to Overlapping ETS and CRE DNA Motifs Is Enhanced by CREB1: Custom DNA Microarrays. G3 (Bethesda, Md.). 5: 1909-18. PMID 26185160 DOI: 10.1534/G3.115.020248 |
0.416 |
|
| 2015 |
Yucesoy B, Kaufman KM, Lummus ZL, Weirauch MT, Zhang G, Cartier A, Boulet LP, Sastre J, Quirce S, Tarlo SM, Cruz MJ, Munoz X, Harley JB, Bernstein DI. Genome-Wide Association Study Identifies Novel Loci Associated With Diisocyanate-Induced Occupational Asthma. Toxicological Sciences : An Official Journal of the Society of Toxicology. 146: 192-201. PMID 25918132 DOI: 10.1093/Toxsci/Kfv084 |
0.355 |
|
| 2015 |
Narasimhan K, Lambert SA, Yang AW, Riddell J, Mnaimneh S, Zheng H, Albu M, Najafabadi HS, Reece-Hoyes JS, Fuxman Bass JI, Walhout AJ, Weirauch MT, Hughes TR. Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities. Elife. 4. PMID 25905672 DOI: 10.7554/eLife.06967 |
0.372 |
|
| 2015 |
Lu X, Zoller EE, Weirauch MT, Wu Z, Namjou B, Williams AH, Ziegler JT, Comeau ME, Marion MC, Glenn SB, Adler A, Shen N, Nath SK, Stevens AM, Freedman BI, et al. Lupus Risk Variant Increases pSTAT1 Binding and Decreases ETS1 Expression. American Journal of Human Genetics. 96: 731-9. PMID 25865496 DOI: 10.1016/J.Ajhg.2015.03.002 |
0.403 |
|
| 2015 |
Kottyan LC, Zoller EE, Bene J, Lu X, Kelly JA, Rupert AM, Lessard CJ, Vaughn SE, Marion M, Weirauch MT, Namjou B, Adler A, Rasmussen A, Glenn S, Montgomery CG, et al. The IRF5-TNPO3 association with systemic lupus erythematosus has two components that other autoimmune disorders variably share. Human Molecular Genetics. 24: 582-96. PMID 25205108 DOI: 10.1093/Hmg/Ddu455 |
0.402 |
|
| 2015 |
Fang J, Bolanos L, Choi K, Liu X, Christie S, Akunuru S, Kumar R, Greis K, Stoilov P, Filippi M, Maciejewski JP, Garcia-Manero G, Weirauch M, Salomonis N, Geiger H, et al. Ubiquitin Editing of a Spliceosome Auxiliary Factor By TRAF6 Links Chronic TLR Signaling with Hematopoietic Defects and Myelodysplasia Blood. 126: 143-143. DOI: 10.1182/Blood.V126.23.143.143 |
0.365 |
|
| 2015 |
Moncrieffe H, Lele A, Shams KA, Levy BE, Marion M, Sudman M, Brungs L, Cobb J, Hinks A, Bohnsack J, Wedderburn LR, Haas J-, Videm V, Rygg M, Nordal E, ... ... Weirauch MT, et al. OP0122 Fine Mapping of the CHR 22Q13.1 Juvenile Idiopathic Arthritis Risk Locus Annals of the Rheumatic Diseases. 74: 114-114. DOI: 10.1136/Annrheumdis-2015-Eular.5296 |
0.354 |
|
| 2014 |
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, ... ... Weirauch MT, et al. Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways. Elife. 3: e02626. PMID 25279814 DOI: 10.7554/Elife.02626 |
0.381 |
|
| 2014 |
Sullivan AM, Arsovski AA, Lempe J, Bubb KL, Weirauch MT, Sabo PJ, Sandstrom R, Thurman RE, Neph S, Reynolds AP, Stergachis AB, Vernot B, Johnson AK, Haugen E, Sullivan ST, et al. Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana. Cell Reports. 8: 2015-30. PMID 25220462 DOI: 10.1016/J.Celrep.2014.08.019 |
0.303 |
|
| 2014 |
Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 158: 1431-43. PMID 25215497 DOI: 10.1016/J.Cell.2014.08.009 |
0.718 |
|
| 2014 |
Zhang X, Ulm A, Somineni HK, Oh S, Weirauch MT, Zhang HX, Chen X, Lehn MA, Janssen EM, Ji H. DNA methylation dynamics during ex vivo differentiation and maturation of human dendritic cells. Epigenetics & Chromatin. 7: 21. PMID 25161698 DOI: 10.1186/1756-8935-7-21 |
0.374 |
|
| 2014 |
Fuxman Bass JI, Tamburino AM, Mori A, Beittel N, Weirauch MT, Reece-Hoyes JS, Walhout AJ. Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters. Nucleic Acids Research. 42: 153-62. PMID 24068555 DOI: 10.1093/Nar/Gkt858 |
0.452 |
|
| 2014 |
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, ... ... Weirauch MT, et al. Author response: Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways Elife. DOI: 10.7554/Elife.02626.031 |
0.378 |
|
| 2013 |
Sebé-Pedrós A, Ariza-Cosano A, Weirauch MT, Leininger S, Yang A, Torruella G, Adamski M, Adamska M, Hughes TR, Gómez-Skarmeta JL, Ruiz-Trillo I. Early evolution of the T-box transcription factor family. Proceedings of the National Academy of Sciences of the United States of America. 110: 16050-5. PMID 24043797 DOI: 10.1073/Pnas.1309748110 |
0.342 |
|
| 2013 |
Mann IK, Chatterjee R, Zhao J, He X, Weirauch MT, Hughes TR, Vinson C. CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo. Genome Research. 23: 988-97. PMID 23590861 DOI: 10.1101/Gr.146654.112 |
0.386 |
|
| 2013 |
Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, et al. Evaluation of methods for modeling transcription factor sequence specificity. Nature Biotechnology. 31: 126-34. PMID 23354101 DOI: 10.1038/Nbt.2486 |
0.31 |
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| 2012 |
Ochs SM, Thumann S, Richau R, Weirauch MT, Lowe TM, Thomm M, Hausner W. Activation of archaeal transcription mediated by recruitment of transcription factor B. The Journal of Biological Chemistry. 287: 18863-71. PMID 22496454 DOI: 10.1074/jbc.M112.365742 |
0.324 |
|
| 2011 |
Weirauch MT, Hughes TR. A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution. Sub-Cellular Biochemistry. 52: 25-73. PMID 21557078 DOI: 10.1007/978-90-481-9069-0_3 |
0.325 |
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| 2005 |
Elnitski L, Giardine B, Shah P, Zhang Y, Riemer C, Weirauch M, Burhans R, Miller W, Hardison RC. Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. Nucleic Acids Research. 33: D466-70. PMID 15608239 DOI: 10.1093/Nar/Gki045 |
0.358 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2015 |
Fowler T, Garruss AS, Ghosh A, De S, Becker KG, Wood WH, Weirauch MT, Smale ST, Aronow B, Sen R, Roy AL. Divergence of transcriptional landscape occurs early in B cell activation. Epigenetics & Chromatin. 8: 20. PMID 25987903 DOI: 10.1186/S13072-015-0012-X |
0.296 |
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| 2023 |
Brown AP, Parameswaran S, Cai L, Elston S, Pham C, Barski A, Weirauch MT, Ji H. TET1 regulates responses to house dust mite by altering chromatin accessibility, DNA methylation, and gene expression in airway epithelial cells. Research Square. PMID 38168374 DOI: 10.21203/rs.3.rs-3726852/v1 |
0.295 |
|
| 2017 |
Najafabadi HS, Garton M, Weirauch MT, Mnaimneh S, Yang A, Kim PM, Hughes TR. Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding. Genome Biology. 18: 167. PMID 28877740 DOI: 10.1186/S13059-017-1287-Y |
0.294 |
|
| 2022 |
Bray D, Hook H, Zhao R, Keenan JL, Penvose A, Osayame Y, Mohaghegh N, Chen X, Parameswaran S, Kottyan LC, Weirauch MT, Siggers T. CASCADE: high-throughput characterization of regulatory complex binding altered by non-coding variants. Cell Genomics. 2. PMID 35252945 DOI: 10.1016/j.xgen.2022.100098 |
0.293 |
|
| 2015 |
Kottyan LC, Weirauch MT, Rothenberg ME. Making it big in allergy. The Journal of Allergy and Clinical Immunology. 135: 43-5. PMID 25567041 DOI: 10.1016/J.Jaci.2014.10.041 |
0.29 |
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| 2018 |
Chhipa RR, Fan Q, Anderson J, Muraleedharan R, Huang Y, Ciraolo G, Chen X, Waclaw R, Chow LM, Khuchua Z, Kofron M, Weirauch MT, Kendler A, McPherson C, Ratner N, et al. AMP kinase promotes glioblastoma bioenergetics and tumour growth. Nature Cell Biology. PMID 29915361 DOI: 10.1038/S41556-018-0126-Z |
0.29 |
|
| 2017 |
Chidambaran V, Zhang X, Martin LJ, Ding L, Weirauch MT, Geisler K, Stubbeman BL, Sadhasivam S, Ji H. DNA methylation at the mu-1 opioid receptor gene (OPRM1) promoter predicts preoperative, acute, and chronic postsurgical pain after spine fusion. Pharmacogenomics and Personalized Medicine. 10: 157-168. PMID 28533693 DOI: 10.2147/Pgpm.S132691 |
0.289 |
|
| 2020 |
Ji H, Zhang X, Myers JB, Chen X, Weirauch M, Guilbert T, Hershey GK. DNA methylation Variation Associated with the Severity of Childhood Asthma Journal of Allergy and Clinical Immunology. 145: AB344. DOI: 10.1016/J.Jaci.2019.12.087 |
0.289 |
|
| 2019 |
Oatman N, Dasgupta N, Dasgupta B, Choi K, Gawali M, Gupta N, Parameswaran S, Lawler S, Brennan C, Wu J, Sallans L, Desai P, Weirauch M, Komurov K. Cbmt-05. Genetic And Epigenetic Mechanisms Regulating Scd Inhibitor Sensitivity In Glioblastoma Neuro-Oncology. 21. DOI: 10.1093/Neuonc/Noz175.127 |
0.288 |
|
| 2008 |
Liu GE, Weirauch MT, Van Tassell CP, Li RW, Sonstegard TS, Matukumalli LK, Connor EE, Hanson RW, Yang J. Identification of Conserved Regulatory Elements in Mammalian Promoter Regions: A Case Study Using the PCK1 Promoter Genomics, Proteomics and Bioinformatics. 6: 129-143. PMID 19329064 DOI: 10.1016/S1672-0229(09)60001-2 |
0.288 |
|
| 2018 |
Harley JB, Chen X, Pujato M, Miller D, Maddox A, Forney C, Magnusen AF, Lynch A, Chetal K, Yukawa M, Barski A, Salomonis N, Kaufman KM, Kottyan LC, Weirauch MT. Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity. Nature Genetics. PMID 29662164 DOI: 10.1038/S41588-018-0102-3 |
0.284 |
|
| 2017 |
Zhang X, Biagini Myers JM, Yadagiri VK, Ulm A, Chen X, Weirauch MT, Khurana Hershey GK, Ji H. Nasal DNA methylation differentiates corticosteroid treatment response in pediatric asthma: A pilot study. Plos One. 12: e0186150. PMID 29028809 DOI: 10.1371/Journal.Pone.0186150 |
0.284 |
|
| 2019 |
Panfilio KA, Vargas Jentzsch IM, Benoit JB, Erezyilmaz D, Suzuki Y, Colella S, Robertson HM, Poelchau MF, Waterhouse RM, Ioannidis P, Weirauch MT, Hughes DST, Murali SC, Werren JH, Jacobs CGC, et al. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. Genome Biology. 20: 64. PMID 30935422 DOI: 10.1186/S13059-019-1660-0 |
0.282 |
|
| 2021 |
Hong T, Parameswaran S, Donmez OA, Miller D, Forney C, Lape M, Saint Just Ribeiro M, Liang J, Edsall LE, Magnusen AF, Miller W, Chepelev I, Harley JB, Zhao B, Kottyan LC, ... Weirauch MT, et al. Epstein-Barr virus nuclear antigen 2 extensively rewires the human chromatin landscape at autoimmune risk loci. Genome Research. PMID 34799401 DOI: 10.1101/gr.264705.120 |
0.282 |
|
| 2009 |
Cozen AE, Weirauch MT, Pollard KS, Bernick DL, Stuart JM, Lowe TM. Transcriptional map of respiratory versatility in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum Journal of Bacteriology. 191: 782-794. PMID 19047344 DOI: 10.1128/Jb.00965-08 |
0.281 |
|
| 2021 |
Kuang Y, Pyo A, Eafergan N, Cain B, Gutzwiller LM, Axelrod O, Gagliani EK, Weirauch MT, Kopan R, Kovall RA, Sprinzak D, Gebelein B. Enhancers with cooperative Notch binding sites are more resistant to regulation by the Hairless co-repressor. Plos Genetics. 17: e1009039. PMID 34559800 DOI: 10.1371/journal.pgen.1009039 |
0.28 |
|
| 2010 |
Weirauch MT, Hughes TR. Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same. Trends in Genetics : Tig. 26: 66-74. PMID 20083321 DOI: 10.1016/j.tig.2009.12.002 |
0.278 |
|
| 2015 |
Makashir SB, Kottyan LC, Weirauch MT. Meta-analysis of differential gene co-expression: application to lupus. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 443-54. PMID 25592603 |
0.277 |
|
| 2022 |
Eapen AA, Parameswaran S, Forney C, Edsall LE, Miller D, Donmez O, Dunn K, Lu X, Granitto M, Rowden H, Magier AZ, Pujato M, Chen X, Kaufman K, Bernstein DI, ... ... Weirauch MT, et al. Epigenetic and transcriptional dysregulation in CD4+ T cells in patients with atopic dermatitis. Plos Genetics. 18: e1009973. PMID 35576187 DOI: 10.1371/journal.pgen.1009973 |
0.277 |
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| 2021 |
Felton JM, Bouffi C, Schwartz JT, Schollaert KL, Malik A, Vallabh S, Wronowski B, Magier AZ, Merlin L, Barski A, Weirauch MT, Fulkerson PC, Rothenberg ME. Aiolos regulates eosinophil migration into tissues. Mucosal Immunology. PMID 34341502 DOI: 10.1038/s41385-021-00416-4 |
0.277 |
|
| 2018 |
Bernstein DI, Lummus ZL, Kesavalu B, Yao J, Kottyan L, Miller D, Cartier A, Cruz MJ, Lemiere C, Muñoz X, Quirce S, Tarlo S, Sastre J, Boulet LP, Weirauch MT, et al. Genetic Variants with Gene Regulatory Effects are Associated with Diisocyanate Asthma. The Journal of Allergy and Clinical Immunology. PMID 29969634 DOI: 10.1016/J.Jaci.2018.06.022 |
0.276 |
|
| 2014 |
Martin LJ, Pilipenko V, Kaufman KM, Cripe L, Kottyan LC, Keddache M, Dexheimer P, Weirauch MT, Benson DW. Whole exome sequencing for familial bicuspid aortic valve identifies putative variants. Circulation. Cardiovascular Genetics. 7: 677-83. PMID 25085919 DOI: 10.1161/Circgenetics.114.000526 |
0.272 |
|
| 2020 |
Chan CC, Damen MSMA, Moreno-Fernandez ME, Stankiewicz TE, Cappelletti M, Alarcon PC, Oates JR, Doll JR, Mukherjee R, Chen X, Karns R, Weirauch MT, Helmrath MA, Inge TH, Divanovic S. Type I interferon sensing unlocks dormant adipocyte inflammatory potential. Nature Communications. 11: 2745. PMID 32488081 DOI: 10.1038/S41467-020-16571-4 |
0.272 |
|
| 2021 |
Chidambaran V, Zhang X, Pilipenko V, Chen X, Wronowski B, Geisler K, Martin LJ, Barski A, Weirauch MT, Ji H. Methylation quantitative trait locus analysis of chronic postsurgical pain uncovers epigenetic mediators of genetic risk. Epigenomics. PMID 33820434 DOI: 10.2217/epi-2020-0424 |
0.269 |
|
| 2017 |
Kottyan LC, Miller DE, Maddox A, Lynch A, Schroeder C, Lee J, Brusilovsky M, Weirauch MT, Rothenberg ME. Eosinophilic Esophagitis Risk Variant at 2p23 Dampens IL-13-Induced Calpain-14 Promoter Activity in a STAT6-Dependent Manner Journal of Allergy and Clinical Immunology. 139: AB273. DOI: 10.1016/J.Jaci.2016.12.880 |
0.268 |
|
| 2023 |
Fu H, Zheng H, Chen X, Weirauch MT, Muglia LJ, Wang L, Liu Y. NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule. Genome Biology. 24: 50. PMID 36927507 DOI: 10.1186/s13059-023-02889-x |
0.268 |
|
| 2020 |
Scott MJ, Benoit JB, Davis RJ, Bailey ST, Varga V, Martinson EO, Hickner PV, Syed Z, Cardoso GA, Torres TT, Weirauch MT, Scholl EH, Phillippy AM, Sagel A, Vasquez M, et al. Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs. Communications Biology. 3: 424. PMID 32753684 DOI: 10.1038/s42003-020-01152-4 |
0.267 |
|
| 2017 |
Gu Z, Kalamboglas J, Yoshioka S, Han W, Li Z, Kawasawa YI, Pochareddy S, Li Z, Liu F, Xu X, Wijeratne S, Ueno M, Blatz E, Salomone J, Kumanogoh A, ... ... Weirauch MT, et al. Control of species-dependent cortico-motoneuronal connections underlying manual dexterity. Science (New York, N.Y.). 357: 400-404. PMID 28751609 DOI: 10.1126/Science.Aan3721 |
0.267 |
|
| 2011 |
Gordon BR, Li Y, Cote A, Weirauch MT, Ding P, Hughes TR, Navarre WW, Xia B, Liu J. Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins. Proceedings of the National Academy of Sciences of the United States of America. 108: 10690-5. PMID 21673140 DOI: 10.1073/Pnas.1102544108 |
0.267 |
|
| 2007 |
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Weirauch MT, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874 |
0.266 |
|
| 2016 |
Merkel PA, Xie G, Monach PA, Ji X, Ciavatta DJ, Byun J, Pinder BD, Zhao A, Zhang J, Tadesse Y, Qian D, Weirauch M, Nair R, Tsoi A, Pagnoux C, et al. Identification of functional and expression polymorphisms associated with risk for anti-neutrophil cytoplasmic autoantibody-associated vasculitis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 28029757 DOI: 10.1002/Art.40034 |
0.263 |
|
| 2023 |
Torre D, Fstkchyan YS, Ho JSY, Cheon Y, Patel RS, Degrace EJ, Mzoughi S, Schwarz M, Mohammed K, Seo JS, Romero-Bueno R, Demircioglu D, Hasson D, Tang W, Mahajani SU, ... ... Weirauch MT, et al. Nuclear RNA catabolism controls endogenous retroviruses, gene expression asymmetry, and dedifferentiation. Molecular Cell. PMID 37995687 DOI: 10.1016/j.molcel.2023.10.036 |
0.263 |
|
| 2017 |
Johansson E, Biagini Myers JM, Martin LJ, He H, Pilipenko V, Mersha T, Weirauch M, Salomonis N, Ryan P, LeMasters GK, Bernstein DI, Lockey J, Khurana Hershey GK. KIF3A genetic variation is associated with pediatric asthma in the presence of eczema independent of allergic rhinitis. The Journal of Allergy and Clinical Immunology. PMID 28238750 DOI: 10.1016/J.Jaci.2017.02.003 |
0.261 |
|
| 2013 |
Chang KN, Zhong S, Weirauch MT, Hon G, Pelizzola M, Li H, Huang SS, Schmitz RJ, Urich MA, Kuo D, Nery JR, Qiao H, Yang A, Jamali A, Chen H, et al. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. Elife. 2: e00675. PMID 23795294 DOI: 10.7554/Elife.00675 |
0.259 |
|
| 2018 |
Grimes H, Venkatasubramanian M, Chou C, Olsson A, Chen X, Chetal K, Newkold T, Kulkarni A, Meyers K, Weirauch M, Salomonis N. Global Unsupervised Splicing Analysis of Leukemia Reveals a Persistent Prognostic Signature That Precurses Oncogenesis Experimental Hematology. 64: S69. DOI: 10.1016/J.Exphem.2018.06.236 |
0.257 |
|
| 2017 |
Johansson E, Biagini Myers JM, Martin LJ, He H, Pilipenko V, Mersha TB, Weirauch MT, Salomonis N, Ryan PH, LeMasters GK, Bernstein DI, Lockey JE, Khurana Hershey G(K. KIF3A genetic Variation Is Associated with a Pediatric Asthma Phenotype Characterized By Past or Current Eczema Independent of Allergic Rhinitis Journal of Allergy and Clinical Immunology. 139: AB384. DOI: 10.1016/J.Jaci.2016.12.923 |
0.257 |
|
| 2018 |
Patel Z, Lu X, Miller D, Forney CR, Lee J, Lynch A, Schroeder C, Parks L, Magnusen AF, Chen X, Pujato M, Maddox A, Zoller EE, Namjou B, Brunner HI, ... ... Weirauch MT, et al. A plausibly causal functional lupus-associated risk variant in the STAT1-STAT4 locus. Human Molecular Genetics. PMID 29912393 DOI: 10.1093/Hmg/Ddy140 |
0.255 |
|
| 2014 |
Fang J, Barker B, Bolanos L, Liu X, Jerez A, Makishima H, Christie S, Chen X, Rao DS, Grimes HL, Komurov K, Weirauch MT, Cancelas JA, Maciejewski JP, Starczynowski DT. Myeloid malignancies with chromosome 5q deletions acquire a dependency on an intrachromosomal NF-κB gene network. Cell Reports. 8: 1328-38. PMID 25199827 DOI: 10.1016/J.Celrep.2014.07.062 |
0.254 |
|
| 2018 |
Zhang C, Seo J, Murakami K, Salem ESB, Bernhard E, Borra VJ, Choi K, Yuan CL, Chan CC, Chen X, Huang T, Weirauch MT, Divanovic S, Qi NR, Thomas HE, et al. Hepatic Ago2-mediated RNA silencing controls energy metabolism linked to AMPK activation and obesity-associated pathophysiology. Nature Communications. 9: 3658. PMID 30201950 DOI: 10.1038/S41467-018-05870-6 |
0.254 |
|
| 2010 |
Weirauch MT, Hughes TR. Dramatic changes in transcription factor binding over evolutionary time. Genome Biology. 11: 122. PMID 20519030 DOI: 10.1186/gb-2010-11-6-122 |
0.254 |
|
| 2023 |
Wang L, Rossi RM, Chen X, Chen J, Runyon J, Chawla M, Miller D, Forney C, Lynch A, Zhang X, Kong F, Jacobsson B, Kottyan LC, Weirauch MT, Zhang G, et al. A functional mechanism for a non-coding variant near AGTR2 associated with risk for preterm birth. Bmc Medicine. 21: 258. PMID 37455310 DOI: 10.1186/s12916-023-02973-w |
0.252 |
|
| 2024 |
Dai D, Gu S, Han X, Ding H, Jiang Y, Zhang X, Yao C, Hong S, Zhang J, Shen Y, Hou G, Qu B, Zhou H, Qin Y, He Y, ... ... Weirauch MT, et al. The transcription factor ZEB2 drives the formation of age-associated B cells. Science (New York, N.Y.). 383: 413-421. PMID 38271512 DOI: 10.1126/science.adf8531 |
0.249 |
|
| 2023 |
Wang C, Liu X, Liang J, Narita Y, Ding W, Li D, Zhang L, Wang H, Leong MML, Hou I, Gerdt C, Jiang C, Zhong Q, Tang Z, Forney C, ... ... Weirauch MT, et al. A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth. Nature Communications. 14: 1598. PMID 36949074 DOI: 10.1038/s41467-023-37347-6 |
0.249 |
|
| 2023 |
Wang Q, Kim T, Martínez-Bonet M, Sim S, Aguiar V, Cui J, Sparks JA, Chen X, Todd M, Wauford B, Weirauch MT, Gutierrez-Arcelus M, Nigrovic PA. High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus. Biorxiv : the Preprint Server For Biology. PMID 37645953 DOI: 10.1101/2023.08.16.553538 |
0.249 |
|
| 2020 |
Rossi RM, Runyon J, Chawla M, Miller D, Forney C, Chen X, Lynch A, Wang L, Zhang G, Weirauch M, Kottyan L, Muglia L. 79: Genetic variants at AGTR2 locus increase risk of preterm birth American Journal of Obstetrics and Gynecology. 222: S66-S67. DOI: 10.1016/J.Ajog.2019.11.095 |
0.245 |
|
| 2021 |
Alizada A, Khyzha N, Wang L, Antounians L, Chen X, Khor M, Liang M, Rathnakumar K, Weirauch MT, Medina-Rivera A, Fish JE, Wilson MD. Conserved regulatory logic at accessible and inaccessible chromatin during the acute inflammatory response in mammals. Nature Communications. 12: 567. PMID 33495464 DOI: 10.1038/s41467-020-20765-1 |
0.242 |
|
| 2021 |
Schott G, Galarza-Muñoz G, Trevino N, Chen X, Weirauch M, Gregory SG, Bradrick SS, Garcia-Blanco MA. U2AF2 binds IL7R exon 6 ectopically and represses its inclusion. Rna (New York, N.Y.). PMID 33568552 DOI: 10.1261/rna.078279.120 |
0.242 |
|
| 2013 |
Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, et al. A compendium of RNA-binding motifs for decoding gene regulation. Nature. 499: 172-7. PMID 23846655 DOI: 10.1038/Nature12311 |
0.24 |
|
| 2016 |
Kottyan LC, D'Mello RJ, Miller D, Maddox A, Stucke E, Rochman M, Patel Z, Rothenberg JA, Davis BP, Chehade M, Sampson HA, Wood RA, Pesek RD, Jones SM, Vickery BP, ... ... Weirauch MT, et al. 11q13 Is an Allergic Risk-Locus That Increases Eoe Risk and Increases LRRC32 Expression Journal of Allergy and Clinical Immunology. 137: AB279. DOI: 10.1016/J.Jaci.2015.12.1161 |
0.24 |
|
| 2021 |
Korinfskaya S, Parameswaran S, Weirauch MT, Barski A. Runx Transcription Factors in T Cells-What Is Beyond Thymic Development? Frontiers in Immunology. 12: 701924. PMID 34421907 DOI: 10.3389/fimmu.2021.701924 |
0.235 |
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| 2024 |
Wayman JA, Yang Z, Angerman E, Bonkowski E, Jurickova I, Chen X, Bejjani AT, Parks L, Parameswaran S, Miethke AG, VanDussen KL, Dhaliwal J, Weirauch MT, Kottyan LC, Denson LA, et al. Accessible chromatin maps of inflammatory bowel disease intestine nominate cell-type mediators of genetic disease risk. Biorxiv : the Preprint Server For Biology. PMID 38405748 DOI: 10.1101/2024.02.09.579678 |
0.234 |
|
| 2019 |
Attardo GM, Abd-Alla AMM, Acosta-Serrano A, Allen JE, Bateta R, Benoit JB, Bourtzis K, Caers J, Caljon G, Christensen MB, Farrow DW, Friedrich M, Hua-Van A, Jennings EC, Larkin DM, ... ... Weirauch MT, et al. Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes. Genome Biology. 20: 187. PMID 31477173 DOI: 10.1186/S13059-019-1768-2 |
0.234 |
|
| 2015 |
Pan W, Zhu S, Dai D, Liu Z, Li D, Li B, Gagliani N, Zheng Y, Tang Y, Weirauch MT, Chen X, Zhu W, Wang Y, Chen B, Qian Y, et al. MiR-125a targets effector programs to stabilize Treg-mediated immune homeostasis. Nature Communications. 6: 7096. PMID 25963922 DOI: 10.1038/Ncomms8096 |
0.233 |
|
| 2015 |
Alipanahi B, Delong A, Weirauch MT, Frey BJ. Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning. Nature Biotechnology. 33: 831-8. PMID 26213851 DOI: 10.1038/Nbt.3300 |
0.232 |
|
| 2015 |
Pelossof R, Singh I, Yang JL, Weirauch MT, Hughes TR, Leslie CS. Affinity regression predicts the recognition code of nucleic acid-binding proteins. Nature Biotechnology. PMID 26571099 DOI: 10.1038/nbt.3343 |
0.232 |
|
| 2024 |
Venkatasubramanian M, Schwartz L, Ramachandra N, Bennett J, Subramanian KR, Chen X, Gordon-Mitchell S, Fromowitz A, Pradhan K, Shechter D, Sahu S, Heiser D, Scherle P, Chetal K, Kulkarni A, ... ... Weirauch MT, et al. Broad de-regulated U2AF1 splicing is prognostic and augments leukemic transformation via protein arginine methyltransferase activation. Biorxiv : the Preprint Server For Biology. PMID 38370617 DOI: 10.1101/2024.02.04.578798 |
0.23 |
|
| 2008 |
Weirauch MT, Wong CK, Byrne AB, Stuart JM. Information-based methods for predicting gene function from systematic gene knock-downs. Bmc Bioinformatics. 9: 463. PMID 18959798 DOI: 10.1186/1471-2105-9-463 |
0.23 |
|
| 2011 |
Meir YJ, Weirauch MT, Yang HS, Chung PC, Yu RK, Wu SC. Genome-wide target profiling of piggyBac and Tol2 in HEK 293: pros and cons for gene discovery and gene therapy. Bmc Biotechnology. 11: 28. PMID 21447194 DOI: 10.1186/1472-6750-11-28 |
0.229 |
|
| 2015 |
Najafabadi HS, Mnaimneh S, Schmitges FW, Garton M, Lam KN, Yang A, Albu M, Weirauch MT, Radovani E, Kim PM, Greenblatt J, Frey BJ, Hughes TR. C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nature Biotechnology. 33: 555-62. PMID 25690854 DOI: 10.1038/Nbt.3128 |
0.229 |
|
| 2020 |
Felton J, Vallabh S, Parameswaran S, Ernst K, Malik A, Weirauch M, BARSKI A, Rothenberg M, Fulkerson P. Mapping the epigenetic landscape of murine eosinophils Journal of Allergy and Clinical Immunology. 145: AB154. DOI: 10.1016/J.Jaci.2019.12.400 |
0.226 |
|
| 2007 |
Chen C, Weirauch MT, Powell CC, Zambon AC, Stuart JM. A search engine to identify pathway genes from expression data on multiple organisms. Bmc Systems Biology. 1: 20. PMID 17477880 DOI: 10.1186/1752-0509-1-20 |
0.224 |
|
| 2018 |
Lambert SA, Jolma A, Campitelli LF, Das PK, Yin Y, Albu M, Chen X, Taipale J, Hughes TR, Weirauch MT. The Human Transcription Factors. Cell. 175: 598-599. PMID 30290144 DOI: 10.1016/j.cell.2018.09.045 |
0.223 |
|
| 2015 |
Cokelaer T, Bansal M, Bare C, Bilal E, Bot BM, Chaibub Neto E, Eduati F, Gönen M, Hill SM, Hoff B, Karr JR, Küffner R, Menden MP, Meyer P, Norel R, ... ... Weirauch MT, et al. DREAMTools: a Python package for scoring collaborative challenges. F1000research. 4: 1030. PMID 27134723 DOI: 10.12688/F1000Research.7118.2 |
0.223 |
|
| 2020 |
Johansson E, Myers JB, Martin L, He H, Weirauch M, Chen X, Hershey GK. NFE2L2 Interacts with Second Hand Smoke Exposure to Increase the Risk and Severity of Pediatric Asthma The Journal of Allergy and Clinical Immunology. 145. DOI: 10.1016/J.Jaci.2019.12.584 |
0.222 |
|
| 2014 |
Qian Y, Johnson JA, Connor JA, Valencia CA, Barasa N, Schubert J, Husami A, Kissell D, Zhang G, Weirauch MT, Filipovich AH, Zhang K. The 253-kb inversion and deep intronic mutations in UNC13D are present in North American patients with familial hemophagocytic lymphohistiocytosis 3. Pediatric Blood & Cancer. 61: 1034-40. PMID 24470399 DOI: 10.1002/Pbc.24955 |
0.219 |
|
| 2021 |
Stone HK, Parameswaran S, Eapen AA, Chen X, Harley JB, Devarajan P, Weirauch MT, Kottyan L. Comprehensive Review of Steroid-Sensitive Nephrotic Syndrome Genetic Risk Loci and Transcriptional Regulation as a Possible Mechanistic Link to Disease Risk. Kidney International Reports. 6: 187-195. PMID 33426398 DOI: 10.1016/j.ekir.2020.09.048 |
0.219 |
|
| 2010 |
Wang BD, Kline CL, Pastor DM, Olson TL, Frank B, Luu T, Sharma AK, Robertson G, Weirauch MT, Patierno SR, Stuart JM, Irby RB, Lee NH. Prostate apoptosis response protein 4 sensitizes human colon cancer cells to chemotherapeutic 5-FU through mediation of an NF kappaB and microRNA network. Molecular Cancer. 9: 98. PMID 20433755 DOI: 10.1186/1476-4598-9-98 |
0.214 |
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| 2021 |
Song R, Gao Y, Dozmorov I, Malladi V, Saha I, McDaniel MM, Parameswaran S, Liang C, Arana C, Zhang B, Wakeland B, Zhou J, Weirauch MT, Kottyan LC, Wakeland EK, et al. IRF1 governs the differential interferon-stimulated gene responses in human monocytes and macrophages by regulating chromatin accessibility. Cell Reports. 34: 108891. PMID 33761354 DOI: 10.1016/j.celrep.2021.108891 |
0.213 |
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| 2023 |
Kiryluk K, Sanchez-Rodriguez E, Zhou XJ, Zanoni F, Liu L, Mladkova N, Khan A, Marasa M, Zhang JY, Balderes O, Sanna-Cherchi S, Bomback AS, Canetta PA, Appel GB, Radhakrishnan J, ... ... Weirauch M, et al. Genome-wide association analyses define pathogenic signaling pathways and prioritize drug targets for IgA nephropathy. Nature Genetics. PMID 37337107 DOI: 10.1038/s41588-023-01422-x |
0.21 |
|
| 2014 |
Pestle WJ, Crowley BE, Weirauch MT. Quantifying inter-laboratory variability in stable isotope analysis of ancient skeletal remains. Plos One. 9: e102844. PMID 25061843 DOI: 10.1371/Journal.Pone.0102844 |
0.209 |
|
| 2014 |
Kottyan LC, Davis BP, Sherrill JD, Liu K, Rochman M, Kaufman K, Weirauch MT, Vaughn S, Lazaro S, Rupert AM, Kohram M, Stucke EM, Kemme KA, Magnusen A, He H, et al. Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease. Nature Genetics. 46: 895-900. PMID 25017104 DOI: 10.1038/ng.3033 |
0.207 |
|
| 2017 |
Fang J, Bolanos LC, Choi K, Liu X, Christie S, Akunuru S, Kumar R, Wang D, Chen X, Greis KD, Stoilov P, Filippi MD, Maciejewski JP, Garcia-Manero G, Weirauch MT, et al. Corrigendum: Ubiquitination of hnRNPA1 by TRAF6 links chronic innate immune signaling with myelodysplasia. Nature Immunology. 18: 474. PMID 28323261 DOI: 10.1038/Ni0417-474A |
0.206 |
|
| 2021 |
Hou G, Harley ITW, Lu X, Zhou T, Xu N, Yao C, Qin Y, Ouyang Y, Ma J, Zhu X, Yu X, Xu H, Dai D, Ding H, Yin Z, ... ... Weirauch MT, et al. SLE non-coding genetic risk variant determines the epigenetic dysfunction of an immune cell specific enhancer that controls disease-critical microRNA expression. Nature Communications. 12: 135. PMID 33420081 DOI: 10.1038/s41467-020-20460-1 |
0.205 |
|
| 2018 |
Chhipa RR, Fan Q, Anderson J, Muraleedharan R, Huang Y, Ciraolo G, Chen X, Waclaw R, Chow LM, Khuchua Z, Kofron M, Weirauch MT, Kendler A, McPherson C, Ratner N, et al. Publisher Correction: AMP kinase promotes glioblastoma bioenergetics and tumour growth. Nature Cell Biology. PMID 30089841 DOI: 10.1038/S41556-018-0185-1 |
0.202 |
|
| 2016 |
Barreyro L, Sampson AM, Bolanos L, Niederkorn M, Pujato M, Smith MA, Tomoya M, Haffey WD, Christie S, Liu X, Weirauch M, Greis K, Seibel WL, Starczynowski DT. Inhibition of UBE2N As a Therapeutic Approach in Myelodysplastic Syndromes (MDS) and Acute Myeloid Leukemia (AML) Blood. 128: 579-579. DOI: 10.1182/Blood.V128.22.579.579 |
0.202 |
|
| 2016 |
Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, ... ... Weirauch MT, et al. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nature Communications. 7: 10165. PMID 26836814 DOI: 10.1038/Ncomms10165 |
0.198 |
|
| 2021 |
Kottyan LC, Trimarchi MP, Lu X, Caldwell JM, Maddox A, Parameswaran S, Lape M, D'Mello RJ, Bonfield M, Ballaban A, Mukkada V, Putnam PE, Abonia P, Ben-Baruch Morgenstern N, Eapen AA, ... ... Weirauch MT, et al. Replication and meta-analyses nominate numerous eosinophilic esophagitis risk genes. The Journal of Allergy and Clinical Immunology. 147: 255-266. PMID 33446330 DOI: 10.1016/j.jaci.2020.10.018 |
0.198 |
|
| 2011 |
Weirauch MT. Gene Coexpression Networks for the Analysis of DNA Microarray Data Applied Statistics For Network Biology: Methods in Systems Biology. 1: 215-250. DOI: 10.1002/9783527638079.ch11 |
0.194 |
|
| 2016 |
Imai F, Chen X, Weirauch MT, Yoshida Y. Requirement for Dicer in Maintenance of Monosynaptic Sensory-Motor Circuits in the Spinal Cord. Cell Reports. 17: 2163-2172. PMID 27880894 DOI: 10.1016/J.Celrep.2016.10.083 |
0.193 |
|
| 2020 |
Petrany MJ, Swoboda CO, Sun C, Chetal K, Chen X, Weirauch MT, Salomonis N, Millay DP. Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers. Nature Communications. 11: 6374. PMID 33311464 DOI: 10.1038/s41467-020-20063-w |
0.19 |
|
| 2023 |
Wang Q, Martínez-Bonet M, Kim T, Sparks JA, Ishigaki K, Chen X, Sudman M, Aguiar V, Sim S, Hernandez MC, Chiu DJ, Wactor A, Wauford B, Marion MC, Gutierrez-Arcelus M, ... ... Weirauch MT, et al. Identification of a regulatory pathway governing TRAF1 via an arthritis-associated non-coding variant. Cell Genomics. 3: 100420. PMID 38020975 DOI: 10.1016/j.xgen.2023.100420 |
0.189 |
|
| 2020 |
Bridges JP, Sudha P, Lipps D, Wagner A, Guo M, Du Y, Brown K, Filuta A, Kitzmiller JA, Stockman C, Chen X, Weirauch MT, Jobe AH, Whitsett JA, Xu Y. Glucocorticoid Regulates Mesenchymal Cell Differentiation Required for Perinatal Lung Morphogenesis and Function. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 32460513 DOI: 10.1152/ajplung.00459.2019 |
0.189 |
|
| 2023 |
Dexheimer PJ, Pujato M, Roskin K, Weirauch MT. VExD: A curated resource for human gene expression alterations following viral infection. G3 (Bethesda, Md.). PMID 37531635 DOI: 10.1093/g3journal/jkad176 |
0.187 |
|
| 2018 |
Schoville SD, Chen YH, Andersson MN, Benoit JB, Bhandari A, Bowsher JH, Brevik K, Cappelle K, Chen MM, Childers AK, Childers C, Christiaens O, Clements J, Didion EM, Elpidina EN, ... ... Weirauch MT, et al. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). Scientific Reports. 8: 1931. PMID 29386578 DOI: 10.1038/S41598-018-20154-1 |
0.187 |
|
| 2020 |
Rajaram S, Canaday LM, Ochayon DE, Rangel KM, Ali A, Gyurova IE, Krishnamurthy D, Fletcher JS, Reighard SD, Cox A, Weirauch MT, Kottyan LC, Deshmukh H, Zacharias WJ, Borchers MT, et al. The Promise and Peril of Natural Killer Cell Therapies in Pulmonary Infection. Immunity. PMID 32405233 DOI: 10.1016/J.Immuni.2020.04.018 |
0.186 |
|
| 2021 |
Singh B, Maiti GP, Zhou X, Fazel-Najafabadi M, Bae SC, Sun C, Terao C, Okada Y, Chua KH, Kochi Y, Guthridge JM, Zhang H, Weirauch M, James JA, Harley JB, et al. Lupus susceptibility region containing CDKN1B rs34330 mechanistically influences expression and function of multiple target genes, also linked to proliferation and apoptosis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 33982894 DOI: 10.1002/art.41799 |
0.184 |
|
| 2023 |
Sun C, Swoboda CO, Petrany MJ, Parameswaran S, VonHandorf A, Weirauch MT, Lepper C, Millay DP. Lineage tracing of newly accrued nuclei in skeletal myofibers uncovers distinct transcripts and interplay between nuclear populations. Biorxiv : the Preprint Server For Biology. PMID 37662191 DOI: 10.1101/2023.08.24.554609 |
0.182 |
|
| 2024 |
Kim T, Martínez-Bonet M, Wang Q, Hackert N, Sparks JA, Baglaenko Y, Koh B, Darbousset R, Laza-Briviesca R, Chen X, Aguiar VRC, Chiu DJ, Westra HJ, Gutierrez-Arcelus M, Weirauch MT, et al. Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development. Nature Communications. 15: 2150. PMID 38459032 DOI: 10.1038/s41467-024-46457-8 |
0.178 |
|
| 2010 |
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, ... ... Weirauch MT, et al. The genetic landscape of a cell. Science (New York, N.Y.). 327: 425-31. PMID 20093466 DOI: 10.1126/Science.1180823 |
0.174 |
|
| 2022 |
Gulati R, Johnston M, Rivas M, Cast A, Kumbaji M, Hanlon MA, Lee S, Zhou P, Lake C, Schepers E, Min KW, Yoon JH, Karns R, Reid LM, Lopez-Terrada D, ... ... Weirauch MT, et al. β-catenin cancer-enhancing genomic regions axis is involved in the development of fibrolamellar hepatocellular carcinoma. Hepatology Communications. PMID 36000549 DOI: 10.1002/hep4.2055 |
0.173 |
|
| 2016 |
Hass MR, Liow HH, Chen X, Sharma A, Inoue YU, Inoue T, Reeb A, Martens A, Fulbright M, Raju S, Stevens M, Boyle S, Park JS, Weirauch MT, Brent MR, et al. SpDamID: Marking DNA Bound by Protein Complexes Identifies Notch-Dimer Responsive Enhancers. Molecular Cell. 64: 213. PMID 27716485 DOI: 10.1016/j.molcel.2016.09.035 |
0.171 |
|
| 2017 |
Zhang G, Feenstra B, Bacelis J, Liu X, Muglia LM, Juodakis J, Miller DE, Litterman N, Jiang PP, Russell L, Hinds DA, Hu Y, Weirauch MT, Chen X, Chavan AR, et al. Genetic Associations with Gestational Duration and Spontaneous Preterm Birth. The New England Journal of Medicine. PMID 28877031 DOI: 10.1056/Nejmoa1612665 |
0.168 |
|
| 2023 |
Meibers HE, Warrick KA, VonHandorf A, Vallez CN, Kawarizadeh K, Saha I, Donmez O, Jain VG, Kottyan LC, Weirauch MT, Pasare C. Effector memory T cells induce innate inflammation by triggering DNA damage and a non-canonical STING pathway in dendritic cells. Cell Reports. 42: 113180. PMID 37794597 DOI: 10.1016/j.celrep.2023.113180 |
0.166 |
|
| 2017 |
Endale M, Ahlfeld S, Bao E, Chen X, Green J, Bess Z, Weirauch MT, Xu Y, Perl AK. Temporal, Spatial, and Phenotypical Changes of PDGFRα Expressing Fibroblasts during Late Lung Development. Developmental Biology. PMID 28408205 DOI: 10.1016/j.ydbio.2017.03.020 |
0.164 |
|
| 2024 |
Li G, Mahajan S, Ma S, Jeffery ED, Zhang X, Bhattacharjee A, Venkatasubramanian M, Weirauch MT, Miraldi ER, Grimes HL, Sheynkman GM, Tilburgs T, Salomonis N. Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy. Science Translational Medicine. 16: eade2886. PMID 38232136 DOI: 10.1126/scitranslmed.ade2886 |
0.159 |
|
| 2022 |
Fagg WS, Liu N, Braunschweig U, Pereira de Castro KL, Chen X, Ditmars FS, Widen SG, Donohue JP, Modis K, Russell WK, Fair JH, Weirauch MT, Blencowe BJ, Garcia-Blanco MA. Definition of germ layer cell lineage alternative splicing programs reveals a critical role for Quaking in specifying cardiac cell fate. Nucleic Acids Research. PMID 35544276 DOI: 10.1093/nar/gkac327 |
0.158 |
|
| 2018 |
Zhang X, Biagini Myers JM, Burleson JD, Ulm A, Bryan KS, Chen X, Weirauch MT, Baker TA, Butsch Kovacic MS, Ji H. Nasal DNA methylation is associated with childhood asthma. Epigenomics. PMID 29692198 DOI: 10.2217/Epi-2017-0127 |
0.156 |
|
| 2022 |
Barreyro L, Sampson AM, Ishikawa C, Hueneman KM, Choi K, Pujato MA, Chutipongtanate S, Wyder M, Haffey WD, O'Brien E, Wunderlich M, Ramesh V, Kolb EM, Meydan C, Neelamraju Y, ... ... Weirauch MT, et al. Blocking UBE2N abrogates oncogenic immune signaling in acute myeloid leukemia. Science Translational Medicine. 14: eabb7695. PMID 35263148 DOI: 10.1126/scitranslmed.abb7695 |
0.151 |
|
| 2023 |
Lape M, Schnell D, Parameswaran S, Ernst K, Salomonis N, Martin LJ, Harnett BM, Kottyan LC, Weirauch MT. After the Infection: A Survey of Pathogens and Non-communicable Human Disease. Medrxiv : the Preprint Server For Health Sciences. PMID 37745430 DOI: 10.1101/2023.09.14.23295428 |
0.15 |
|
| 2013 |
Meir YJ, Lin A, Huang MF, Lin JR, Weirauch MT, Chou HC, Lin SJ, Wu SC. A versatile, highly efficient, and potentially safer piggyBac transposon system for mammalian genome manipulations. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 27: 4429-43. PMID 23896728 DOI: 10.1096/fj.12-223586 |
0.148 |
|
| 2013 |
Reece-Hoyes JS, Pons C, Diallo A, Mori A, Shrestha S, Kadreppa S, Nelson J, Diprima S, Dricot A, Lajoie BR, Ribeiro PS, Weirauch MT, Hill DE, Hughes TR, Myers CL, et al. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Molecular Cell. 51: 116-27. PMID 23791784 DOI: 10.1016/j.molcel.2013.05.018 |
0.146 |
|
| 2018 |
Valanejad L, Cast A, Wright M, Bissig KD, Karns R, Weirauch MT, Timchenko N. PARP1 activation increases expression of modified tumor suppressors and pathways underlying development of aggressive hepatoblastoma. Communications Biology. 1: 67. PMID 30271949 DOI: 10.1038/s42003-018-0077-8 |
0.143 |
|
| 2022 |
Namjou B, Lape M, Malolepsza E, DeVore SB, Weirauch MT, Dikilitas O, Jarvik GP, Kiryluk K, Kullo IJ, Liu C, Luo Y, Satterfield BA, Smoller JW, Walunas TL, Connolly J, et al. Multiancestral polygenic risk score for pediatric asthma. The Journal of Allergy and Clinical Immunology. PMID 35595084 DOI: 10.1016/j.jaci.2022.03.035 |
0.143 |
|
| 2017 |
Endale M, Ahlfeld S, Bao E, Chen X, Green J, Bess Z, Weirauch M, Xu Y, Perl AK. Dataset on transcriptional profiles and the developmental characteristics of PDGFRα expressing lung fibroblasts. Data in Brief. 13: 415-431. PMID 28702480 DOI: 10.1016/j.dib.2017.06.001 |
0.142 |
|
| 2021 |
Oatman N, Dasgupta N, Arora P, Choi K, Gawali MV, Gupta N, Parameswaran S, Salomone J, Reisz JA, Lawler S, Furnari F, Brennan C, Wu J, Sallans L, Gudelsky G, ... ... Weirauch MT, et al. Mechanisms of stearoyl CoA desaturase inhibitor sensitivity and acquired resistance in cancer. Science Advances. 7. PMID 33568479 DOI: 10.1126/sciadv.abd7459 |
0.14 |
|
| 2021 |
Murrison LB, Ren X, Prusse K, He H, Kroner J, Chen X, Jenkins S, Johansson E, Biagini JM, Weirauch MT, Kopan R, Martin LJ, Khurana Hershey GK. TSLP disease-associated genetic variants combined with airway TSLP expression to influence asthma risk. The Journal of Allergy and Clinical Immunology. PMID 34111451 DOI: 10.1016/j.jaci.2021.05.033 |
0.137 |
|
| 2020 |
Yin X, Kim K, Suetsugu H, Bang SY, Wen L, Koido M, Ha E, Liu L, Sakamoto Y, Jo S, Leng RX, Otomo N, Laurynenka V, Kwon YC, Sheng Y, ... ... Weirauch MT, et al. Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus. Annals of the Rheumatic Diseases. PMID 33272962 DOI: 10.1136/annrheumdis-2020-219209 |
0.135 |
|
| 2021 |
Olafson PU, Aksoy S, Attardo GM, Buckmeier G, Chen X, Coates CJ, Davis M, Dykema J, Emrich SJ, Friedrich M, Holmes CJ, Ioannidis P, Jansen EN, Jennings EC, Lawson D, ... ... Weirauch MT, et al. Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control. Bmc Biology. 19: 150. PMID 34325695 DOI: 10.1186/s12915-021-01098-x |
0.132 |
|
| 2021 |
Olafson PU, Aksoy S, Attardo GM, Buckmeier G, Chen X, Coates CJ, Davis M, Dykema J, Emrich SJ, Friedrich M, Holmes CJ, Ioannidis P, Jansen EN, Jennings EC, Lawson D, ... ... Weirauch MT, et al. The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control. Bmc Biology. 19: 41. PMID 33750380 DOI: 10.1186/s12915-021-00975-9 |
0.131 |
|
| 2020 |
Zhu T, Zhang X, Chen X, Anthony BP, Weirauch MT, Guilbert TW, Khurana Hershey GK, Biagini JM, Ji H. Nasal DNA methylation differentiates severe from non-severe asthma in African-American children. Allergy. PMID 33175399 DOI: 10.1111/all.14655 |
0.13 |
|
| 2022 |
Virolainen SJ, VonHandorf A, Viel KCMF, Weirauch MT, Kottyan LC. Gene-environment interactions and their impact on human health. Genes and Immunity. 24: 1-11. PMID 36585519 DOI: 10.1038/s41435-022-00192-6 |
0.127 |
|
| 2021 |
Santiago IJ, Zhang D, Saras A, Pontillo N, Xu C, Chen X, Weirauch MT, Mistry M, Ginty DD, Pecot MY, Peng J. Fezf functions as a transcriptional repressor to direct layer-specific synaptic connectivity in the fly visual system. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33766917 DOI: 10.1073/pnas.2025530118 |
0.123 |
|
| 2007 |
Byrne AB, Weirauch MT, Wong V, Koeva M, Dixon SJ, Stuart JM, Roy PJ. A global analysis of genetic interactions in Caenorhabditis elegans. Journal of Biology. 6: 8. PMID 17897480 DOI: 10.1186/Jbiol58 |
0.122 |
|
| 2021 |
Ho JSY, Mok BW, Campisi L, Jordan T, Yildiz S, Parameswaran S, Wayman JA, Gaudreault NN, Meekins DA, Indran SV, Morozov I, Trujillo JD, Fstkchyan YS, Rathnasinghe R, Zhu Z, ... ... Weirauch MT, et al. TOP1 inhibition therapy protects against SARS-CoV-2-induced lethal inflammation. Cell. PMID 33836156 DOI: 10.1016/j.cell.2021.03.051 |
0.122 |
|
| 2024 |
Viel KCMF, Parameswaran S, Donmez OA, Forney CR, Hass MR, Yin C, Jones SH, Prosser HK, Diouf AA, Gittens OE, Edsall LE, Chen X, Rowden H, Dunn KA, Guo R, ... ... Weirauch MT, et al. Shared and distinct interactions of type 1 and type 2 Epstein-Barr Nuclear Antigen 2 with the human genome. Bmc Genomics. 25: 273. PMID 38475709 DOI: 10.1186/s12864-024-10183-8 |
0.12 |
|
| 2021 |
Moreno-Fernandez ME, Giles DA, Oates JR, Chan CC, Damen MSMA, Doll JR, Stankiewicz TE, Chen X, Chetal K, Karns R, Weirauch MT, Romick-Rosendale L, Xanthakos SA, Sheridan R, Szabo S, et al. PKM2-dependent metabolic skewing of hepatic Th17 cells regulates pathogenesis of non-alcoholic fatty liver disease. Cell Metabolism. PMID 34004162 DOI: 10.1016/j.cmet.2021.04.018 |
0.117 |
|
| 2024 |
Wang Q, Martínez-Bonet M, Kim T, Sparks JA, Ishigaki K, Chen X, Sudman M, Aguiar V, Sim S, Hernandez MC, Chiu DJ, Wactor A, Wauford B, Marion MC, Gutierrez-Arcelus M, ... ... Weirauch MT, et al. Identification of a regulatory pathway governing TRAF1 via an arthritis-associated non-coding variant. Cell Genomics. 4: 100502. PMID 38359789 DOI: 10.1016/j.xgen.2024.100502 |
0.117 |
|
| 2020 |
Finch G, Nandyal S, Perretta C, Davies B, Rosendale AJ, Holmes CJ, Gantz JD, Spacht DE, Bailey ST, Chen X, Oyen K, Didion EM, Chakraborty S, Lee RE, Denlinger DL, ... ... Weirauch MT, et al. Multi-level analysis of reproduction in an Antarctic midge identifies female and male accessory gland products that are altered by larval stress and impact progeny viability. Scientific Reports. 10: 19791. PMID 33188214 DOI: 10.1038/s41598-020-76139-6 |
0.117 |
|
| 2020 |
Yuin Ho JS, Wing-Yee Mok B, Campisi L, Jordan T, Yildiz S, Parameswaran S, Wayman JA, Gaudreault NN, Meekins DA, Indran SV, Morozov I, Trujillo JD, Fstkchyan YS, Rathnasinghe R, Zhu Z, ... ... Weirauch MT, et al. Topoisomerase 1 inhibition therapy protects against SARS-CoV-2-induced inflammation and death in animal models. Biorxiv : the Preprint Server For Biology. PMID 33299999 DOI: 10.1101/2020.12.01.404483 |
0.116 |
|
| 2020 |
Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, ... ... Weirauch MT, et al. Genome-enabled insights into the biology of thrips as crop pests. Bmc Biology. 18: 142. PMID 33070780 DOI: 10.1186/s12915-020-00862-9 |
0.113 |
|
| 2020 |
Johansson E, Martin LJ, He H, Chen X, Weirauch MT, Kroner JW, Khurana Hershey GK, Biagini JM. Secondhand smoke and NFE2L2 genotype interaction increases pediatric asthma risk and severity. Clinical and Experimental Allergy : Journal of the British Society For Allergy and Clinical Immunology. PMID 33382170 DOI: 10.1111/cea.13815 |
0.106 |
|
| 2020 |
Sparks ME, Bansal R, Benoit JB, Blackburn MB, Chao H, Chen M, Cheng S, Childers C, Dinh H, Doddapaneni HV, Dugan S, Elpidina EN, Farrow DW, Friedrich M, Gibbs RA, ... ... Weirauch MT, et al. Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. Bmc Genomics. 21: 227. PMID 32171258 DOI: 10.1186/S12864-020-6510-7 |
0.105 |
|
| 2020 |
Rotenberg D, Baumann AA, Ben-Mahmoud S, Christiaens O, Dermauw W, Ioannidis P, Jacobs CGC, Vargas Jentzsch IM, Oliver JE, Poelchau MF, Rajarapu SP, Schneweis DJ, Snoeck S, Taning CNT, Wei D, ... ... Weirauch MT, et al. Correction to: Genome-enabled insights into the biology of thrips as crop pests. Bmc Biology. 18: 169. PMID 33198778 DOI: 10.1186/s12915-020-00915-z |
0.099 |
|
| 2021 |
Herman EK, Greninger A, van der Giezen M, Ginger ML, Ramirez-Macias I, Miller HC, Morgan MJ, Tsaousis AD, Velle K, Vargová R, Záhonová K, Najle SR, MacIntyre G, Muller N, Wittwer M, ... ... Weirauch MT, et al. Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri. Bmc Biology. 19: 142. PMID 34294116 DOI: 10.1186/s12915-021-01078-1 |
0.099 |
|
| 2023 |
Bedard MC, Chihanga T, Carlile A, Jackson R, Brusadelli MG, Lee D, VonHandorf A, Rochman M, Dexheimer PJ, Chalmers J, Nuovo G, Lehn M, Williams DEJ, Kulkarni A, Carey M, ... ... Weirauch MT, et al. Single cell transcriptomic analysis of HPV16-infected epithelium identifies a keratinocyte subpopulation implicated in cancer. Nature Communications. 14: 1975. PMID 37031202 DOI: 10.1038/s41467-023-37377-0 |
0.099 |
|
| 2023 |
Dourson AJ, Fadaka AO, Warshak AM, Paranjpe A, Weinhaus B, Queme LF, Hofmann MC, Evans HM, Donmez OA, Forney C, Weirauch MT, Kottyan LC, Lucas D, Deepe GS, Jankowski MP. Macrophage epigenetic memories of early life injury drive neonatal nociceptive priming. Biorxiv : the Preprint Server For Biology. PMID 36824978 DOI: 10.1101/2023.02.13.528015 |
0.096 |
|
| 2018 |
Chhipa RR, Fan Q, Anderson J, Muraleedharan R, Huang Y, Ciraolo G, Chen X, Waclaw R, Chow LM, Khuchua Z, Kofron M, Weirauch MT, Kendler A, McPherson C, Ratner N, et al. Author Correction: AMP kinase promotes glioblastoma bioenergetics and tumour growth. Nature Cell Biology. PMID 30190576 DOI: 10.1038/s41556-018-0203-3 |
0.075 |
|
| 2006 |
Khatib F, Weirauch MT, Rohl CA. Rapid knot detection and application to protein structure prediction. Bioinformatics (Oxford, England). 22: e252-9. PMID 16873480 DOI: 10.1093/Bioinformatics/Btl236 |
0.074 |
|
| 2021 |
Johnston ME, Rivas MP, Nicolle D, Gorse A, Gulati R, Kumbaji M, Weirauch MT, Bondoc A, Cairo S, Geller J, Tiao G, Timchenko N. Olaparib Inhibits Tumor Growth of Hepatoblastoma in Patient Derived Xenograft Models. Hepatology (Baltimore, Md.). PMID 34037269 DOI: 10.1002/hep.31919 |
0.072 |
|
| 2022 |
Brusilovsky M, Rochman M, Shoda T, Kotliar M, Caldwell JM, Mack LE, Besse JA, Chen X, Weirauch MT, Barski A, Rothenberg ME. Vitamin D receptor and STAT6 interactome governs oesophageal epithelial barrier responses to IL-13 signalling. Gut. PMID 35918104 DOI: 10.1136/gutjnl-2022-327276 |
0.071 |
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| 2021 |
Miraldi ER, Chen X, Weirauch MT. Deciphering cis-regulatory grammar with deep learning. Nature Genetics. 53: 266-268. PMID 33686263 DOI: 10.1038/s41588-021-00814-1 |
0.045 |
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| Hide low-probability matches. |