| Year |
Citation |
Score |
| 2024 |
Gao S, Huang T, Chen L, Jiang N, Ren G. T-DNA insertion in Arabidopsis caused coexisting chromosomal inversion and duplication at megabase level. Gene. 148577. PMID 38762016 DOI: 10.1016/j.gene.2024.148577 |
0.358 |
|
| 2024 |
Xin H, Wang Y, Zhang W, Yu B, Neumann P, Ning Y, Zhang T, Wu Y, Jiang N, Jiang J, Xi M. Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes. Plant Physiology. PMID 38652695 DOI: 10.1093/plphys/kiae214 |
0.374 |
|
| 2024 |
Fang C, Jiang N, Teresi SJ, Platts AE, Agarwal G, Niederhuth C, Edger PP, Jiang J. Dynamics of accessible chromatin regions and subgenome dominance in octoploid strawberry. Nature Communications. 15: 2491. PMID 38509076 DOI: 10.1038/s41467-024-46861-0 |
0.343 |
|
| 2024 |
Ou S, Jiang N, Hirsch CN, Hufford MB. Response to Commentary: Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies. Genome Biology. 25: 6. PMID 38169403 DOI: 10.1186/s13059-023-03119-0 |
0.777 |
|
| 2023 |
Ding C, Gao J, Zhang S, Jiang N, Su D, Huang X, Zhang Z. The Basic/Helix-Loop-Helix Transcription Factor Family Gene RcbHLH112 Is a Susceptibility Gene in Gray Mould Resistance of Rose (Rosa Chinensis). International Journal of Molecular Sciences. 24. PMID 38003495 DOI: 10.3390/ijms242216305 |
0.334 |
|
| 2023 |
Ma T, Xue H, Piao C, Jiang N, Li Y. Genome-based analyses of family Oxalobacteraceae reveal the taxonomic classification. Research in Microbiology. 104076. PMID 37137377 DOI: 10.1016/j.resmic.2023.104076 |
0.406 |
|
| 2022 |
Planta J, Liang YY, Xin H, Chansler MT, Prather LA, Jiang N, Jiang J, Childs KL. Chromosome scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus and Juncus inflexus. G3 (Bethesda, Md.). PMID 35976112 DOI: 10.1093/g3journal/jkac211 |
0.476 |
|
| 2022 |
Cerbin S, Ou S, Li Y, Sun Y, Jiang N. Distinct Composition and Amplification Dynamics of Transposable Elements in Sacred Lotus (Nelumbo nucifera Gaertn.). The Plant Journal : For Cell and Molecular Biology. PMID 35959634 DOI: 10.1111/tpj.15938 |
0.816 |
|
| 2022 |
Zhang Y, Chen C, Wu J, Jin J, Xu T, Zhou Y, Cui P, Chen J, Chen S, Jiang N, Zhang W. Sequence-Based Genomic Analysis Reveals Transmission of Antibiotic Resistance and Virulence among Carbapenemase-Producing Klebsiella pneumoniae Strains. Msphere. e0014322. PMID 35546482 DOI: 10.1128/msphere.00143-22 |
0.302 |
|
| 2022 |
Ou S, Su W, Liao Y, Chougule K, Agda JRA, Hellinga AJ, Lugo CSB, Elliott TA, Ware D, Peterson T, Jiang N, Hirsch CN, Hufford MB. Author Correction: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biology. 23: 76. PMID 35260190 DOI: 10.1186/s13059-022-02645-7 |
0.775 |
|
| 2021 |
Li Y, Jiang N, Sun Y. AnnoSINE: A short interspersed nuclear elements annotation tool for plant genomes. Plant Physiology. PMID 34792587 DOI: 10.1093/plphys/kiab524 |
0.479 |
|
| 2021 |
Lu CH, Li JY, Mi MG, Lin ZL, Jiang N, Gai X, Ma JH, Lei LP, Xia ZY. Complete genome sequence of subsp. strain LLRS-1, isolated from wilted tobacco in China. Phytopathology. PMID 34100304 DOI: 10.1094/PHYTO-04-21-0138-A |
0.31 |
|
| 2021 |
Qin P, Lu H, Du H, Wang H, Chen W, Chen Z, He Q, Ou S, Zhang H, Li X, Li X, Li Y, Liao Y, Gao Q, Tu B, ... ... Jiang N, et al. Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations. Cell. PMID 34051138 DOI: 10.1016/j.cell.2021.04.046 |
0.775 |
|
| 2020 |
Xu J, Wu J, Teng X, Cai L, Yuan H, Chen X, Hu M, Wang X, Jiang N, Chen H. Large duplication in LMBR1 gene in a large Chinese pedigree with triphalangeal thumb polysyndactyly syndrome. American Journal of Medical Genetics. Part A. PMID 32662247 DOI: 10.1002/ajmg.a.61757 |
0.364 |
|
| 2019 |
Ou S, Jiang N. LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons. Mobile Dna. 10: 48. PMID 31857828 DOI: 10.1186/S13100-019-0193-0 |
0.78 |
|
| 2019 |
Ou S, Su W, Liao Y, Chougule K, Agda JRA, Hellinga AJ, Lugo CSB, Elliott TA, Ware D, Peterson T, Jiang N, Hirsch CN, Hufford MB. Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biology. 20: 275. PMID 31843001 DOI: 10.1186/S13059-019-1905-Y |
0.832 |
|
| 2019 |
Cerbin S, Wai CM, VanBuren R, Jiang N. GingerRoot: a novel DNA transposon encoding integrase-related transposase in plants and animals. Genome Biology and Evolution. PMID 31633753 DOI: 10.1093/Gbe/Evz230 |
0.84 |
|
| 2019 |
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, ... ... Jiang N, et al. Author Correction: Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30842601 DOI: 10.1038/S41588-019-0380-4 |
0.694 |
|
| 2019 |
Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, ... ... Jiang N, et al. Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30804557 DOI: 10.1038/S41588-019-0356-4 |
0.751 |
|
| 2019 |
Colle M, Leisner CP, Wai CM, Ou S, Bird KA, Wang J, Wisecaver JH, Yocca AE, Alger EI, Tang H, Xiong Z, Callow P, Ben-Zvi G, Brodt A, Baruch K, ... ... Jiang N, et al. Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. Gigascience. PMID 30715294 DOI: 10.1093/Gigascience/Giz012 |
0.778 |
|
| 2019 |
Zheng L, Jiang N, Sang X, Zhang N, Zhang K, Chen H, Yang N, Feng Y, Chen R, Suo X, Chen Q. In-depth analysis of the genome of Trypanosoma evansi, an etiologic agent of surra. Science China. Life Sciences. PMID 30685829 DOI: 10.1007/s11427-018-9473-8 |
0.47 |
|
| 2018 |
Jiang N, Zhang C, Liu JY, Guo ZH, Zhang ZY, Han CG, Wang Y. Development of Beet necrotic yellow vein virus-based vectors for multiple-gene expression and guide RNA delivery in plant genome editing. Plant Biotechnology Journal. PMID 30565826 DOI: 10.1111/pbi.13055 |
0.335 |
|
| 2018 |
Dai AH, Yang SX, Zhou HK, Tang KQ, Li G, Leng JT, Yu H, Zhang YH, Gao JS, Yang X, Guo YJ, Jiang N, Feng XZ. Evolution and Expression Divergence of the CYP78A Subfamily Genes in Soybean. Genes. 9. PMID 30544641 DOI: 10.3390/Genes9120611 |
0.347 |
|
| 2018 |
Ou S, Chen J, Jiang N. Assessing genome assembly quality using the LTR Assembly Index (LAI). Nucleic Acids Research. PMID 30107434 DOI: 10.1093/Nar/Gky730 |
0.812 |
|
| 2018 |
Cerbin S, Jiang N. Duplication of host genes by transposable elements. Current Opinion in Genetics & Development. 49: 63-69. PMID 29571044 DOI: 10.1016/J.Gde.2018.03.005 |
0.814 |
|
| 2018 |
Zhao D, Hamilton JP, Vaillancourt B, Zhang W, Eizenga GC, Cui Y, Jiang J, Buell CR, Jiang N. The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum. Nucleic Acids Research. PMID 29415183 DOI: 10.1093/Nar/Gky091 |
0.473 |
|
| 2018 |
Zhao D, Hamilton JP, Vaillancourt B, Zhang W, Eizenga GC, Cui Y, Jiang J, Buell CR, Jiang N. The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum. Nucleic Acids Research. PMID 29365184 DOI: 10.1093/nar/gky025 |
0.371 |
|
| 2018 |
VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP. Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. Nature Communications. 9: 13. PMID 29296019 DOI: 10.1038/S41467-017-02546-5 |
0.799 |
|
| 2017 |
Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, ... ... Jiang N, et al. Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity. Gigascience. PMID 29253147 DOI: 10.1093/Gigascience/Gix124 |
0.781 |
|
| 2017 |
Ou S, Jiang N. LTR_retriever: a highly accurate and sensitive program for identification of long terminal-repeat retrotransposons. Plant Physiology. PMID 29233850 DOI: 10.1104/Pp.17.01310 |
0.802 |
|
| 2017 |
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Jiang N, et al. Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 13: e1006802. PMID 28542203 DOI: 10.1371/journal.pgen.1006802 |
0.334 |
|
| 2017 |
Gao J, Yang S, Cheng W, Fu Y, Leng J, Yuan X, Jiang N, Ma J, Feng X. GmILPA1, Encoding an anaphase-promoting complex-like Protein, affects Leaf Petiole Angle. Plant Physiology. PMID 28336772 DOI: 10.1104/Pp.16.00074 |
0.372 |
|
| 2016 |
Wang Y, Xiong D, Jiang N, Li X, Yang Q, Tian C. High-resolution transcript profiling reveals shoot abscission process of spruce dwarf mistletoe Arceuthobium sichuanense in response to ethephon. Scientific Reports. 6: 38889. PMID 27941945 DOI: 10.1038/srep38889 |
0.301 |
|
| 2016 |
Zhao D, Hamilton JP, Hardigan M, Yin D, He T, Vaillancourt B, Reynoso M, Pauluzzi G, Funkhouser S, Cui Y, Bailey-Serres J, Jiang J, Buell CR, Jiang N. Analysis of Ribosome-Associated mRNAs in Rice Reveals the Importance of Transcript Size and GC Content in Translation. G3 (Bethesda, Md.). PMID 27852012 DOI: 10.1534/G3.116.036020 |
0.374 |
|
| 2016 |
Jiang N, Zhang F, Wu J, Chen Y, Hu X, Fang O, Leach LJ, Wang D, Luo Z. A highly robust and optimized sequence-based approach for genetic polymorphism discovery and genotyping in large plant populations. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 27316437 DOI: 10.1007/s00122-016-2736-9 |
0.414 |
|
| 2016 |
Gao D, Zhao D, Abernathy B, Iwata-Otsubo A, Herrera-Estrella A, Jiang N, Jackson SA. Dynamics of a Novel Highly Repetitive CACTA Family in Common Bean (Phaseolus vulgaris). G3 (Bethesda, Md.). PMID 27185400 DOI: 10.1534/G3.116.028761 |
0.59 |
|
| 2016 |
Kang H, Zhu D, Lin R, Opiyo SO, Jiang N, Shiu SH, Wang GL. A novel method for identifying polymorphic transposable elements via scanning of high-throughput short reads. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 27098848 DOI: 10.1093/Dnares/Dsw011 |
0.495 |
|
| 2016 |
Zhao D, Ferguson AA, Jiang N. What makes up plant genomes: The vanishing line between transposable elements and genes. Biochimica Et Biophysica Acta. 1859: 366-80. PMID 26709091 DOI: 10.1016/J.Bbagrm.2015.12.005 |
0.556 |
|
| 2016 |
Zhao D, Ferguson AA, Jiang N. What makes up plant genomes: The vanishing line between transposable elements and genes Biochimica Et Biophysica Acta - Gene Regulatory Mechanisms. 1859: 366-380. DOI: 10.1016/j.bbagrm.2015.12.005 |
0.451 |
|
| 2015 |
Zhao B, Dai A, Wei H, Yang S, Wang B, Jiang N, Feng X. Arabidopsis KLU homologue GmCYP78A72 regulates seed size in soybean. Plant Molecular Biology. PMID 26482479 DOI: 10.1007/S11103-015-0392-0 |
0.327 |
|
| 2015 |
Gao D, Jiang N, Wing RA, Jiang J, Jackson SA. Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science. 6: 216. PMID 25904926 DOI: 10.3389/Fpls.2015.00216 |
0.473 |
|
| 2015 |
Zhao D, Ferguson A, Jiang N. Transposition of a rice Mutator-like element in the yeast Saccharomyces cerevisiae. The Plant Cell. 27: 132-48. PMID 25587002 DOI: 10.1105/Tpc.114.128488 |
0.498 |
|
| 2015 |
Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, et al. Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. Plant Physiology. 167: 25-39. PMID 25384563 DOI: 10.1104/Pp.114.245027 |
0.509 |
|
| 2014 |
Feng P, Jiang N, Liu N. Prediction of DNase I hypersensitive sites by using pseudo nucleotide compositions. Thescientificworldjournal. 2014: 740506. PMID 25215331 DOI: 10.1155/2014/740506 |
0.333 |
|
| 2014 |
Zhao D, Jiang N. Nested insertions and accumulation of indels are negatively correlated with abundance of Mutator-like transposable elements in maize and rice Plos One. 9. PMID 24475224 DOI: 10.1371/Journal.Pone.0087069 |
0.517 |
|
| 2014 |
Wang L, Jiang N, Wang L, Fang O, Leach LJ, Hu X, Luo Z. 3' Untranslated regions mediate transcriptional interference between convergent genes both locally and ectopically in Saccharomyces cerevisiae. Plos Genetics. 10: e1004021. PMID 24465217 DOI: 10.1371/journal.pgen.1004021 |
0.341 |
|
| 2014 |
Xu Y, Jiang N, Zou Z, Tu Z, Chen A, Zhao Q, Xiang Z, He N. Retrotransposon "Qian" mediated segmental duplication in silkworm, Bombyx mori. Insect Biochemistry and Molecular Biology. 46: 9-16. PMID 24462715 DOI: 10.1016/J.Ibmb.2014.01.002 |
0.446 |
|
| 2014 |
Yang S, Liu Y, Jiang N, Chen J, Leach L, Luo Z, Wang M. Genome-wide eQTLs and heritability for gene expression traits in unrelated individuals. Bmc Genomics. 15: 13. PMID 24405759 DOI: 10.1186/1471-2164-15-13 |
0.371 |
|
| 2014 |
Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, et al. MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology. 164: 513-24. PMID 24306534 DOI: 10.1104/Pp.113.230144 |
0.492 |
|
| 2014 |
Jiang N. Computational methods for identification of DNA transposons. Methods in Molecular Biology (Clifton, N.J.). 1057: 289-304. PMID 23918437 DOI: 10.1007/978-1-62703-568-2_21 |
0.477 |
|
| 2014 |
Jiang N. Overview of repeat annotation and de novo repeat identification. Methods in Molecular Biology (Clifton, N.J.). 1057: 275-87. PMID 23918436 DOI: 10.1007/978-1-62703-568-2_20 |
0.581 |
|
| 2013 |
Ferguson AA, Zhao D, Jiang N. Selective acquisition and retention of genomic sequences by Pack-Mutator-like elements based on guanine-cytosine content and the breadth of expression. Plant Physiology. 163: 1419-32. PMID 24028844 DOI: 10.1104/pp.113.223271 |
0.445 |
|
| 2013 |
Song GQ, Walworth A, Zhao D, Jiang N, Hancock JF. The Vaccinium corymbosum FLOWERING LOCUS T-like gene (VcFT): a flowering activator reverses photoperiodic and chilling requirements in blueberry. Plant Cell Reports. 32: 1759-69. PMID 23907615 DOI: 10.1007/S00299-013-1489-Z |
0.319 |
|
| 2013 |
Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, ... ... Jiang N, et al. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14: R41. PMID 23663246 DOI: 10.1186/Gb-2013-14-5-R41 |
0.519 |
|
| 2013 |
Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, et al. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nature Genetics. 45: 415-21, 421e1-2. PMID 23435085 DOI: 10.1038/Ng.2568 |
0.558 |
|
| 2013 |
Ferguson AA, Zhao D, Jiang N. Selective Acquisition and Retention of Genomic Sequences by Pack-Mutator-Like Elements Based on Guanine-Cytosine Content and the Breadth of Expression Plant Physiology. 163: 1419-1432. DOI: 10.1104/Pp.113.223271 |
0.535 |
|
| 2012 |
Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Jiang N, et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 8: e1003064. PMID 23166516 DOI: 10.1371/Journal.Pgen.1003064 |
0.479 |
|
| 2012 |
Ferguson AA, Jiang N. Mutator-like elements with multiple long terminal inverted repeats in plants. Comparative and Functional Genomics. 2012: 695827. PMID 22474413 DOI: 10.1155/2012/695827 |
0.523 |
|
| 2012 |
Davidson RM, Gowda M, Moghe G, Lin H, Vaillancourt B, Shiu SH, Jiang N, Robin Buell C. Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution. The Plant Journal : For Cell and Molecular Biology. 71: 492-502. PMID 22443345 DOI: 10.1111/J.1365-313X.2012.05005.X |
0.5 |
|
| 2012 |
Wang M, Jiang N, Jia T, Leach L, Cockram J, Comadran J, Shaw P, Waugh R, Ramsay L, Thomas B, Luo Z. Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 124: 233-46. PMID 21915710 DOI: 10.1007/s00122-011-1697-2 |
0.341 |
|
| 2011 |
Ferguson AA, Jiang N. Pack-MULEs: Recycling and reshaping genes through GC-biased acquisition. Mobile Genetic Elements. 1: 135-138. PMID 22016862 DOI: 10.4161/mge.1.2.16948 |
0.49 |
|
| 2011 |
Jiang N, Ferguson AA, Slotkin RK, Lisch D. Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition. Proceedings of the National Academy of Sciences of the United States of America. 108: 1537-42. PMID 21220310 DOI: 10.1073/Pnas.1010814108 |
0.426 |
|
| 2011 |
Ferguson AA, Jiang N. Pack-MULEs Mobile Genetic Elements. 1: 135-138. DOI: 10.4161/Mge.1.2.16948 |
0.583 |
|
| 2011 |
Davidson RM, Hansey CN, Gowda M, Childs KL, Lin H, Vaillancourt B, Sekhon RS, de Leon N, Kaeppler SM, Jiang N, Buell CR. Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes The Plant Genome. 4: 191-203. DOI: 10.3835/Plantgenome2011.05.0015 |
0.452 |
|
| 2010 |
Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/J.1365-313X.2010.04251.X |
0.498 |
|
| 2010 |
Zhang H, Liang W, Yang X, Luo X, Jiang N, Ma H, Zhang D. Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development. The Plant Cell. 22: 672-89. PMID 20305120 DOI: 10.1105/Tpc.109.073668 |
0.302 |
|
| 2010 |
Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Jiang N, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747 |
0.81 |
|
| 2010 |
Druka A, Potokina E, Luo Z, Jiang N, Chen X, Kearsey M, Waugh R. Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8: 10-27. PMID 20055957 DOI: 10.1111/j.1467-7652.2009.00460.x |
0.316 |
|
| 2009 |
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Jiang N, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534 |
0.836 |
|
| 2009 |
Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Jiang N, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728 |
0.832 |
|
| 2009 |
Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/J.1365-313X.2009.04005.X |
0.549 |
|
| 2009 |
Jiang N, Gao D, Xiao H, van der Knaap E. Genome organization of the tomato sun locus and characterization of the unusual retrotransposon Rider. The Plant Journal : For Cell and Molecular Biology. 60: 181-93. PMID 19508380 DOI: 10.1111/J.1365-313X.2009.03946.X |
0.577 |
|
| 2009 |
Hanada K, Vallejo V, Nobuta K, Slotkin RK, Lisch D, Meyers BC, Shiu SH, Jiang N. The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. The Plant Cell. 21: 25-38. PMID 19136648 DOI: 10.1105/Tpc.108.063206 |
0.366 |
|
| 2009 |
Jiang N, Gao D, Xiao H, van der Knaap E. Genome organization of the tomatosunlocus and characterization of the unusual retrotransposonRider The Plant Journal. 60: 181-193. DOI: 10.1111/j.1365-313X.2009.03946.x |
0.354 |
|
| 2008 |
Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/Tpc.108.063727 |
0.738 |
|
| 2008 |
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Jiang N, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856 |
0.725 |
|
| 2008 |
Xiao H, Jiang N, Schaffner E, Stockinger EJ, van der Knaap E. A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit. Science (New York, N.Y.). 319: 1527-30. PMID 18339939 DOI: 10.1126/Science.1153040 |
0.502 |
|
| 2007 |
Campbell MA, Zhu W, Jiang N, Lin H, Ouyang S, Childs KL, Haas BJ, Hamilton JP, Buell CR. Identification and characterization of lineage-specific genes within the poaceae Plant Physiology. 145: 1311-1322. PMID 17951464 DOI: 10.1104/Pp.107.104513 |
0.517 |
|
| 2007 |
Ammiraju JS, Zuccolo A, Yu Y, Song X, Piegu B, Chevalier F, Walling JG, Ma J, Talag J, Brar DS, SanMiguel PJ, Jiang N, Jackson SA, Panaud O, Wing RA. Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 52: 342-51. PMID 17764506 DOI: 10.1111/J.1365-313X.2007.03242.X |
0.522 |
|
| 2007 |
Zhang S, Gu YQ, Singh J, Coleman-Derr D, Brar DS, Jiang N, Lemaux PG. New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification. Plant Molecular Biology. 64: 589-600. PMID 17534720 DOI: 10.1007/S11103-007-9178-3 |
0.527 |
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| 2006 |
Holligan D, Zhang X, Jiang N, Pritham EJ, Wessler SR. The transposable element landscape of the model legume Lotus japonicus. Genetics. 174: 2215-28. PMID 17028332 DOI: 10.1534/Genetics.106.062752 |
0.845 |
|
| 2005 |
Zhang S, Chen C, Li L, Meng L, Singh J, Jiang N, Deng XW, He ZH, Lemaux PG. Evolutionary expansion, gene structure, and expression of the rice wall-associated kinase gene family. Plant Physiology. 139: 1107-24. PMID 16286450 DOI: 10.1104/Pp.105.069005 |
0.423 |
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| 2004 |
Jiang N, Bao Z, Zhang X, Eddy SR, Wessler SR. Pack-MULE transposable elements mediate gene evolution in plants. Nature. 431: 569-73. PMID 15457261 DOI: 10.1038/Nature02953 |
0.782 |
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| 2004 |
Feltus FA, Wan J, Schulze SR, Estill JC, Jiang N, Paterson AH. An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Research. 14: 1812-9. PMID 15342564 DOI: 10.1101/Gr.2479404 |
0.434 |
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| 2004 |
Zhang X, Jiang N, Feschotte C, Wessler SR. PIF- and Pong-like transposable elements: distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements. Genetics. 166: 971-86. PMID 15020481 DOI: 10.1534/Genetics.166.2.971 |
0.822 |
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| 2004 |
Jiang N, Feschotte C, Zhang X, Wessler SR. Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Current Opinion in Plant Biology. 7: 115-9. PMID 15003209 DOI: 10.1016/J.Pbi.2004.01.004 |
0.797 |
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| 2003 |
Jiang N, Bao Z, Zhang X, Hirochika H, Eddy SR, McCouch SR, Wessler SR. An active DNA transposon family in rice. Nature. 421: 163-7. PMID 12520302 DOI: 10.1038/Nature01214 |
0.756 |
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| 2002 |
Jiang N, Jordan IK, Wessler SR. Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome. Plant Physiology. 130: 1697-705. PMID 12481052 DOI: 10.1104/Pp.015412 |
0.752 |
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| 2002 |
Jiang N, Bao Z, Temnykh S, Cheng Z, Jiang J, Wing RA, McCouch SR, Wessler SR. Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics. 161: 1293-305. PMID 12136031 |
0.709 |
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| 2002 |
Peterson DG, Schulze SR, Sciara EB, Lee SA, Bowers JE, Nagel A, Jiang N, Tibbitts DC, Wessler SR, Paterson AH. Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery. Genome Research. 12: 795-807. PMID 11997346 DOI: 10.1101/Gr.226102 |
0.72 |
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| 2002 |
Feschotte C, Jiang N, Wessler SR. Plant transposable elements: where genetics meets genomics. Nature Reviews. Genetics. 3: 329-41. PMID 11988759 DOI: 10.1038/Nrg793 |
0.815 |
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| 2001 |
Jiang N, Wessler SR. Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements. The Plant Cell. 13: 2553-64. PMID 11701888 DOI: 10.1105/Tpc.010235 |
0.72 |
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| 2001 |
Zhang X, Feschotte C, Zhang Q, Jiang N, Eggleston WB, Wessler SR. P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases. Proceedings of the National Academy of Sciences of the United States of America. 98: 12572-7. PMID 11675493 DOI: 10.1073/Pnas.211442198 |
0.792 |
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| 2001 |
Jiang N, Wessler SR. Insertion Preference of Maize and Rice Miniature Inverted Repeat Transposable Elements as Revealed by the Analysis of Nested Elements The Plant Cell. 13: 2553-2564. DOI: 10.1105/tpc.010235 |
0.617 |
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