| Year |
Citation |
Score |
| 2022 |
Stephan T, Burgess SM, Cheng H, Danko CG, Gill CA, Jarvis ED, Koepfli KP, Koltes JE, Lyons E, Ronald P, Ryder OA, Schriml LM, Soltis P, VandeWoude S, Zhou H, et al. Darwinian genomics and diversity in the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35042807 DOI: 10.1073/pnas.2115644119 |
0.524 |
|
| 2021 |
Wang MFZ, Mantri M, Chou SP, Scuderi GJ, McKellar DW, Butcher JT, Danko CG, De Vlaminck I. Uncovering transcriptional dark matter via gene annotation independent single-cell RNA sequencing analysis. Nature Communications. 12: 2158. PMID 33846360 DOI: 10.1038/s41467-021-22496-3 |
0.421 |
|
| 2020 |
Lewis JJ, Van Belleghem SM, Papa R, Danko CG, Reed RD. Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone. Science Advances. 6. PMID 32978147 DOI: 10.1126/sciadv.abb8617 |
0.386 |
|
| 2020 |
Mukai C, Choi E, Sams KL, Klampen EZ, Anguish L, Marks BA, Rice EJ, Wang Z, Choate LA, Chou SP, Kato Y, Miller AD, Danko CG, Coonrod SA. Chromatin run-on sequencing analysis finds that ECM remodeling plays an important role in canine hemangiosarcoma pathogenesis. Bmc Veterinary Research. 16: 206. PMID 32571313 DOI: 10.1186/s12917-020-02395-3 |
0.34 |
|
| 2019 |
Chou SP, Danko CG. AlleleHMM: a data-driven method to identify allele specific differences in distributed functional genomic marks. Nucleic Acids Research. PMID 30918970 DOI: 10.1093/nar/gkz176 |
0.49 |
|
| 2018 |
Chu T, Wang Z, Chou SP, Danko CG. Discovering Transcriptional Regulatory Elements From Run-On and Sequencing Data Using the Web-Based dREG Gateway. Current Protocols in Bioinformatics. e70. PMID 30589513 DOI: 10.1002/cpbi.70 |
0.408 |
|
| 2018 |
Saikia M, Burnham P, Keshavjee SH, Wang MFZ, Heyang M, Moral-Lopez P, Hinchman MM, Danko CG, Parker JSL, De Vlaminck I. Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells. Nature Methods. PMID 30559431 DOI: 10.1038/S41592-018-0259-9 |
0.33 |
|
| 2018 |
Chu T, Rice EJ, Booth GT, Salamanca HH, Wang Z, Core LJ, Longo SL, Corona RJ, Chin LS, Lis JT, Kwak H, Danko CG. Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme. Nature Genetics. PMID 30349114 DOI: 10.1038/S41588-018-0244-3 |
0.315 |
|
| 2017 |
Meyers-Wallen VN, Boyko AR, Danko CG, Grenier JK, Mezey JG, Hayward JJ, Shannon LM, Gao C, Shafquat A, Rice EJ, Pujar S, Eggers S, Ohnesorg T, Sinclair AH. XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris). Plos One. 12: e0186331. PMID 29053721 DOI: 10.1371/Journal.Pone.0186331 |
0.32 |
|
| 2017 |
Blumberg A, Rice EJ, Kundaje A, Danko CG, Mishmar D. Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution. Genome Research. 27: 362-373. PMID 28049628 DOI: 10.1101/Gr.209924.116 |
0.343 |
|
| 2016 |
Mahat DB, Kwak H, Booth GT, Jonkers IH, Danko CG, Patel RK, Waters CT, Munson K, Core LJ, Lis JT. Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq). Nature Protocols. 11: 1455-1476. PMID 27442863 DOI: 10.1038/Nprot.2016.086 |
0.338 |
|
| 2014 |
Luo X, Chae M, Krishnakumar R, Danko CG, Kraus WL. Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analyses. Bmc Genomics. 15: 155. PMID 24564208 DOI: 10.1186/1471-2164-15-155 |
0.314 |
|
| 2010 |
Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, ... ... Danko CG, et al. Complete Khoisan and Bantu genomes from southern Africa. Nature. 463: 943-7. PMID 20164927 DOI: 10.1038/Nature08795 |
0.578 |
|
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