| Year |
Citation |
Score |
| 2024 |
Abassah-Oppong S, Zoia M, Mannion BJ, Rouco R, Tissières V, Spurrell CH, Roland V, Darbellay F, Itum A, Gamart J, Festa-Daroux TA, Sullivan CS, Kosicki M, Rodríguez-Carballo E, Fukuda-Yuzawa Y, ... ... Dickel DE, et al. A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival. Nature Communications. 15: 8793. PMID 39389973 DOI: 10.1038/s41467-024-53009-7 |
0.343 |
|
| 2024 |
Liu Z, Ypsilanti AR, Markenscoff-Papadimitriou E, Dickel DE, Sanders SJ, Dong S, Pennacchio LA, Visel A, Rubenstein JL. enhancers have distinct functions in controlling expression during cortical development. Proceedings of the National Academy of Sciences of the United States of America. 121: e2402368121. PMID 39312666 DOI: 10.1073/pnas.2402368121 |
0.302 |
|
| 2024 |
Kosicki M, Zhang B, Pampari A, Akiyama JA, Plajzer-Frick I, Novak CS, Tran S, Zhu Y, Kato M, Hunter RD, von Maydell K, Barton S, Beckman E, Kundaje A, Dickel DE, et al. Mutagenesis Sensitivity Mapping of Human Enhancers . Biorxiv : the Preprint Server For Biology. PMID 39282388 DOI: 10.1101/2024.09.06.611737 |
0.318 |
|
| 2024 |
Rajderkar SS, Paraiso K, Amaral ML, Kosicki M, Cook LE, Darbellay F, Spurrell CH, Osterwalder M, Zhu Y, Wu H, Afzal SY, Blow MJ, Kelman G, Barozzi I, Fukuda-Yuzawa Y, ... ... Dickel DE, et al. Dynamic enhancer landscapes in human craniofacial development. Nature Communications. 15: 2030. PMID 38448444 DOI: 10.1038/s41467-024-46396-4 |
0.741 |
|
| 2023 |
Huang X, Henck J, Qiu C, Sreenivasan VKA, Balachandran S, Amarie OV, Hrabě de Angelis M, Behncke RY, Chan WL, Despang A, Dickel DE, Duran M, Feuchtinger A, Fuchs H, Gailus-Durner V, et al. Single-cell, whole-embryo phenotyping of mammalian developmental disorders. Nature. PMID 37968388 DOI: 10.1038/s41586-023-06548-w |
0.31 |
|
| 2023 |
Rajderkar SS, Paraiso K, Amaral ML, Kosicki M, Cook LE, Darbellay F, Spurrell CH, Osterwalder M, Zhu Y, Wu H, Afzal SY, Blow MJ, Kelman G, Barozzi I, Fukuda-Yuzawa Y, ... ... Dickel DE, et al. Cell Type- and Tissue-specific Enhancers in Craniofacial Development. Biorxiv : the Preprint Server For Biology. PMID 37425964 DOI: 10.1101/2023.06.26.546603 |
0.741 |
|
| 2023 |
Catta-Preta R, Lindtner S, Ypsilanti A, Price J, Abnousi A, Su-Feher L, Wang Y, Juric I, Jones IR, Akiyama JA, Hu M, Shen Y, Visel A, Pennacchio LA, Dickel D, et al. Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis. Biorxiv : the Preprint Server For Biology. PMID 37425940 DOI: 10.1101/2023.06.28.546894 |
0.301 |
|
| 2023 |
Losa M, Barozzi I, Osterwalder M, Hermosilla-Aguayo V, Morabito A, Chacón BH, Zarrineh P, Girdziusaite A, Benazet JD, Zhu J, Mackem S, Capellini TD, Dickel D, Bobola N, Zuniga A, et al. A spatio-temporally constrained gene regulatory network directed by PBX1/2 acquires limb patterning specificity via HAND2. Nature Communications. 14: 3993. PMID 37414772 DOI: 10.1038/s41467-023-39443-z |
0.304 |
|
| 2023 |
Rajderkar S, Barozzi I, Zhu Y, Hu R, Zhang Y, Li B, Alcaina Caro A, Fukuda-Yuzawa Y, Kelman G, Akeza A, Blow MJ, Pham Q, Harrington AN, Godoy J, Meky EM, ... ... Dickel DE, et al. Topologically associating domain boundaries are required for normal genome function. Communications Biology. 6: 435. PMID 37081156 DOI: 10.1038/s42003-023-04819-w |
0.313 |
|
| 2022 |
Spurrell CH, Barozzi I, Kosicki M, Mannion BJ, Blow MJ, Fukuda-Yuzawa Y, Slaven N, Afzal SY, Akiyama JA, Afzal V, Tran S, Plajzer-Frick I, Novak CS, Kato M, Lee EA, ... ... Dickel DE, et al. Genome-wide fetalization of enhancer architecture in heart disease. Cell Reports. 40: 111400. PMID 36130500 DOI: 10.1016/j.celrep.2022.111400 |
0.714 |
|
| 2022 |
Osterwalder M, Tran S, Hunter RD, Meky EM, von Maydell K, Harrington AN, Godoy J, Novak CS, Plajzer-Frick I, Zhu Y, Akiyama JA, Afzal V, Kvon EZ, Pennacchio LA, Dickel DE, et al. Characterization of Mammalian In Vivo Enhancers Using Mouse Transgenesis and CRISPR Genome Editing. Methods in Molecular Biology (Clifton, N.J.). 2403: 147-186. PMID 34913122 DOI: 10.1007/978-1-0716-1847-9_11 |
0.426 |
|
| 2021 |
Snetkova V, Pennacchio LA, Visel A, Dickel DE. Perfect and imperfect views of ultraconserved sequences. Nature Reviews. Genetics. PMID 34764456 DOI: 10.1038/s41576-021-00424-x |
0.358 |
|
| 2020 |
Long HK, Osterwalder M, Welsh IC, Hansen K, Davies JOJ, Liu YE, Koska M, Adams AT, Aho R, Arora N, Ikeda K, Williams RM, Sauka-Spengler T, Porteus MH, Mohun T, ... Dickel DE, et al. Loss of Extreme Long-Range Enhancers in Human Neural Crest Drives a Craniofacial Disorder. Cell Stem Cell. PMID 32991838 DOI: 10.1016/j.stem.2020.09.001 |
0.36 |
|
| 2020 |
Sethi A, Gu M, Gumusgoz E, Chan L, Yan KK, Rozowsky J, Barozzi I, Afzal V, Akiyama JA, Plajzer-Frick I, Yan C, Novak CS, Kato M, Garvin TH, Pham Q, ... ... Dickel DE, et al. Supervised enhancer prediction with epigenetic pattern recognition and targeted validation. Nature Methods. 17: 807-814. PMID 32737473 DOI: 10.1038/S41592-020-0907-8 |
0.359 |
|
| 2020 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... Dickel DE, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4 |
0.451 |
|
| 2020 |
He P, Williams BA, Trout D, Marinov GK, Amrhein H, Berghella L, Goh ST, Plajzer-Frick I, Afzal V, Pennacchio LA, Dickel DE, Visel A, Ren B, Hardison RC, Zhang Y, et al. The changing mouse embryo transcriptome at whole tissue and single-cell resolution. Nature. 583: 760-767. PMID 32728245 DOI: 10.1038/S41586-020-2536-X |
0.436 |
|
| 2020 |
He Y, Hariharan M, Gorkin DU, Dickel DE, Luo C, Castanon RG, Nery JR, Lee AY, Zhao Y, Huang H, Williams BA, Trout D, Amrhein H, Fang R, Chen H, et al. Spatiotemporal DNA methylome dynamics of the developing mouse fetus. Nature. 583: 752-759. PMID 32728242 DOI: 10.1038/S41586-020-2119-X |
0.442 |
|
| 2020 |
Gorkin DU, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee AY, Li B, Chiou J, Wildberg A, Ding B, Zhang B, Wang M, Strattan JS, Davidson JM, Qiu Y, ... ... Dickel DE, et al. An atlas of dynamic chromatin landscapes in mouse fetal development. Nature. 583: 744-751. PMID 32728240 DOI: 10.1038/S41586-020-2093-3 |
0.46 |
|
| 2020 |
Richter F, Morton SU, Kim SW, Kitaygorodsky A, Wasson LK, Chen KM, Zhou J, Qi H, Patel N, DePalma SR, Parfenov M, Homsy J, Gorham JM, Manheimer KB, Velinder M, ... ... Dickel DE, et al. Genomic analyses implicate noncoding de novo variants in congenital heart disease. Nature Genetics. PMID 32601476 DOI: 10.1038/S41588-020-0652-Z |
0.448 |
|
| 2020 |
Kvon EZ, Zhu Y, Kelman G, Novak CS, Plajzer-Frick I, Kato M, Garvin TH, Pham Q, Harrington AN, Hunter RD, Godoy J, Meky EM, Akiyama JA, Afzal V, Tran S, ... ... Dickel DE, et al. Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants. Cell. PMID 32169219 DOI: 10.1016/J.Cell.2020.02.031 |
0.43 |
|
| 2019 |
Lindtner S, Catta-Preta R, Tian H, Su-Feher L, Price JD, Dickel DE, Greiner V, Silberberg SN, McKinsey GL, McManus MT, Pennacchio LA, Visel A, Nord AS, Rubenstein JLR. Genomic Resolution of DLX-Orchestrated Transcriptional Circuits Driving Development of Forebrain GABAergic Neurons. Cell Reports. 28: 2048-2063.e8. PMID 31433982 DOI: 10.1016/J.Celrep.2019.07.022 |
0.65 |
|
| 2019 |
Turco GM, Rodriguez-Medina J, Siebert S, Han D, Valderrama-Gómez MÁ, Vahldick H, Shulse CN, Cole BJ, Juliano CE, Dickel DE, Savageau MA, Brady SM. Molecular Mechanisms Driving Switch Behavior in Xylem Cell Differentiation. Cell Reports. 28: 342-351.e4. PMID 31291572 DOI: 10.1016/J.Celrep.2019.06.041 |
0.336 |
|
| 2019 |
Oz-Levi D, Olender T, Bar-Joseph I, Zhu Y, Marek-Yagel D, Barozzi I, Osterwalder M, Alkelai A, Ruzzo EK, Han Y, Vos ESM, Reznik-Wolf H, Hartman C, Shamir R, Weiss B, ... ... Dickel DE, et al. Noncoding deletions reveal a gene that is critical for intestinal function. Nature. PMID 31217582 DOI: 10.1038/S41586-019-1312-2 |
0.63 |
|
| 2019 |
Shulse CN, Cole BJ, Ciobanu D, Lin J, Yoshinaga Y, Gouran M, Turco GM, Zhu Y, O'Malley RC, Brady SM, Dickel DE. High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types. Cell Reports. 27: 2241-2247.e4. PMID 31091459 DOI: 10.1016/J.Celrep.2019.04.054 |
0.375 |
|
| 2019 |
Hashimoto H, Wang Z, Garry GA, Malladi VS, Botten GA, Ye W, Zhou H, Osterwalder M, Dickel DE, Visel A, Liu N, Bassel-Duby R, Olson EN. Cardiac Reprogramming Factors Synergistically Activate Genome-wide Cardiogenic Stage-Specific Enhancers. Cell Stem Cell. PMID 31080136 DOI: 10.1016/J.Stem.2019.03.022 |
0.43 |
|
| 2018 |
McClymont SA, Hook PW, Soto AI, Reed X, Law WD, Kerans SJ, Waite EL, Briceno NJ, Thole JF, Heckman MG, Diehl NN, Wszolek ZK, Moore CD, Zhu H, Akiyama JA, ... Dickel DE, et al. Parkinson-Associated SNCA Enhancer Variants Revealed by Open Chromatin in Mouse Dopamine Neurons. American Journal of Human Genetics. 103: 874-892. PMID 30503521 DOI: 10.1016/J.Ajhg.2018.10.018 |
0.308 |
|
| 2018 |
Preissl S, Fang R, Huang H, Zhao Y, Raviram R, Gorkin DU, Zhang Y, Sos BC, Afzal V, Dickel DE, Kuan S, Visel A, Pennacchio LA, Zhang K, Ren B. Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation. Nature Neuroscience. PMID 29434377 DOI: 10.1038/S41593-018-0079-3 |
0.435 |
|
| 2018 |
Osterwalder M, Barozzi I, Tissières V, Fukuda-Yuzawa Y, Mannion BJ, Afzal SY, Lee EA, Zhu Y, Plajzer-Frick I, Pickle CS, Kato M, Garvin TH, Pham QT, Harrington AN, Akiyama JA, ... ... Dickel DE, et al. Enhancer redundancy provides phenotypic robustness in mammalian development. Nature. 554: 239-243. PMID 29420474 DOI: 10.1038/Nature25461 |
0.52 |
|
| 2018 |
Dickel DE, Ypsilanti AR, Pla R, Zhu Y, Barozzi I, Mannion BJ, Khin YS, Fukuda-Yuzawa Y, Plajzer-Frick I, Pickle CS, Lee EA, Harrington AN, Pham QT, Garvin TH, Kato M, et al. Ultraconserved Enhancers Are Required for Normal Development. Cell. PMID 29358049 DOI: 10.1016/J.Cell.2017.12.017 |
0.436 |
|
| 2017 |
Turner TN, Coe BP, Dickel DE, Hoekzema K, Nelson BJ, Zody MC, Kronenberg ZN, Hormozdiari F, Raja A, Pennacchio LA, Darnell RB, Eichler EE. Genomic Patterns of De Novo Mutation in Simplex Autism. Cell. PMID 28965761 DOI: 10.1016/J.Cell.2017.08.047 |
0.422 |
|
| 2017 |
Monti R, Barozzi I, Osterwalder M, Lee E, Kato M, Garvin TH, Plajzer-Frick I, Pickle CS, Akiyama JA, Afzal V, Beerenwinkel N, Dickel DE, Visel A, Pennacchio LA. Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb. Plos Computational Biology. 13: e1005720. PMID 28827824 DOI: 10.1371/Journal.Pcbi.1005720 |
0.41 |
|
| 2017 |
Gompers AL, Su-Feher L, Ellegood J, Copping NA, Riyadh MA, Stradleigh TW, Pride MC, Schaffler MD, Wade AA, Catta-Preta R, Zdilar I, Louis S, Kaushik G, Mannion BJ, Plajzer-Frick I, ... ... Dickel DE, et al. Germline Chd8 haploinsufficiency alters brain development in mouse. Nature Neuroscience. PMID 28671691 DOI: 10.1038/Nn.4592 |
0.401 |
|
| 2017 |
Anderson CM, Hu J, Thomas R, Gainous TB, Celona B, Sinha T, Dickel DE, Heidt AB, Xu SM, Bruneau BG, Pollard KS, Pennacchio LA, Black BL. Cooperative activation of cardiac transcription through myocardin bridging of paired MEF2 sites. Development (Cambridge, England). 144: 1235-1241. PMID 28351867 DOI: 10.1242/Dev.138487 |
0.311 |
|
| 2017 |
He Y, Gorkin DU, Dickel DE, Nery JR, Castanon RG, Lee AY, Shen Y, Visel A, Pennacchio LA, Ren B, Ecker JR. Improved regulatory element prediction based on tissue-specific local epigenomic signatures. Proceedings of the National Academy of Sciences of the United States of America. PMID 28193886 DOI: 10.1073/Pnas.1618353114 |
0.433 |
|
| 2016 |
Spurrell CH, Dickel DE, Visel A. The Ties That Bind: Mapping the Dynamic Enhancer-Promoter Interactome. Cell. 167: 1163-1166. PMID 27863237 DOI: 10.1016/J.Cell.2016.10.054 |
0.716 |
|
| 2016 |
Kvon EZ, Kamneva OK, Melo US, Barozzi I, Osterwalder M, Mannion BJ, Tissières V, Pickle CS, Plajzer-Frick I, Lee EA, Kato M, Garvin TH, Akiyama JA, Afzal V, Lopez-Rios J, ... ... Dickel DE, et al. Progressive Loss of Function in a Limb Enhancer during Snake Evolution. Cell. 167: 633-642.e11. PMID 27768887 DOI: 10.1016/J.Cell.2016.09.028 |
0.433 |
|
| 2016 |
Dickel DE, Barozzi I, Zhu Y, Fukuda-Yuzawa Y, Osterwalder M, Mannion BJ, May D, Spurrell CH, Plajzer-Frick I, Pickle CS, Lee E, Garvin TH, Kato M, Akiyama JA, Afzal V, et al. Genome-wide compendium and functional assessment of in vivo heart enhancers. Nature Communications. 7: 12923. PMID 27703156 DOI: 10.1038/Ncomms12923 |
0.735 |
|
| 2016 |
Barozzi I, Visel A, Dickel DE. Fishing for Function in the Human Gene Pool. Trends in Genetics : Tig. PMID 27220646 DOI: 10.1016/J.Tig.2016.05.002 |
0.404 |
|
| 2014 |
Dickel DE, Zhu Y, Nord AS, Wylie JN, Akiyama JA, Afzal V, Plajzer-Frick I, Kirkpatrick A, Göttgens B, Bruneau BG, Visel A, Pennacchio LA. Function-based identification of mammalian enhancers using site-specific integration. Nature Methods. 11: 566-71. PMID 24658141 DOI: 10.1038/Nmeth.2886 |
0.637 |
|
| 2013 |
Wilkinson AC, Goode DK, Cheng YH, Dickel DE, Foster S, Sendall T, Tijssen MR, Sanchez MJ, Pennacchio LA, Kirkpatrick AM, Göttgens B. Single site-specific integration targeting coupled with embryonic stem cell differentiation provides a high-throughput alternative to in vivo enhancer analyses. Biology Open. 2: 1229-38. PMID 24244860 DOI: 10.1242/Bio.20136296 |
0.456 |
|
| 2013 |
Dickel DE, Visel A, Pennacchio LA. Functional anatomy of distant-acting mammalian enhancers. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120359. PMID 23650633 DOI: 10.1098/Rstb.2012.0359 |
0.499 |
|
| 2011 |
Nord AS, Roeb W, Dickel DE, Walsh T, Kusenda M, O'Connor KL, Malhotra D, McCarthy SE, Stray SM, Taylor SM, Sebat J, King B, King MC, McClellan JM. Reduced transcript expression of genes affected by inherited and de novo CNVs in autism. European Journal of Human Genetics : Ejhg. 19: 727-31. PMID 21448237 DOI: 10.1038/Ejhg.2011.24 |
0.684 |
|
| 2010 |
Girirajan S, Rosenfeld JA, Cooper GM, Antonacci F, Siswara P, Itsara A, Vives L, Walsh T, McCarthy SE, Baker C, Mefford HC, Kidd JM, Browning SR, Browning BL, Dickel DE, et al. A recurrent 16p12.1 microdeletion supports a two-hit model for severe developmental delay. Nature Genetics. 42: 203-9. PMID 20154674 DOI: 10.1038/Ng.534 |
0.499 |
|
| 2010 |
Shahin H, Walsh T, Rayyan AA, Lee MK, Higgins J, Dickel D, Lewis K, Thompson J, Baker C, Nord AS, Stray S, Gurwitz D, Avraham KB, King MC, Kanaan M. Five novel loci for inherited hearing loss mapped by SNP-based homozygosity profiles in Palestinian families. European Journal of Human Genetics : Ejhg. 18: 407-13. PMID 19888295 DOI: 10.1038/Ejhg.2009.190 |
0.69 |
|
| 2009 |
McCarthy SE, Makarov V, Kirov G, Addington AM, McClellan J, Yoon S, Perkins DO, Dickel DE, Kusenda M, Krastoshevsky O, Krause V, Kumar RA, Grozeva D, Malhotra D, Walsh T, et al. Microduplications of 16p11.2 are associated with schizophrenia. Nature Genetics. 41: 1223-7. PMID 19855392 DOI: 10.1038/Ng.474 |
0.456 |
|
| 2006 |
Dickel DE, Veenstra-VanderWeele J, Cox NJ, Wu X, Fischer DJ, Van Etten-Lee M, Himle JA, Leventhal BL, Cook EH, Hanna GL. Association testing of the positional and functional candidate gene SLC1A1/EAAC1 in early-onset obsessive-compulsive disorder. Archives of General Psychiatry. 63: 778-85. PMID 16818867 DOI: 10.1001/Archpsyc.63.7.778 |
0.322 |
|
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