| Year |
Citation |
Score |
| 2018 |
Lambert C, Braxton C, Charlebois RL, Deyati A, Duncan P, La Neve F, Malicki HD, Ribrioux S, Rozelle DK, Michaels B, Sun W, Yang Z, Khan AS. Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection. Viruses. 10. PMID 30262776 DOI: 10.3390/V10100528 |
0.368 |
|
| 2014 |
Charlebois RL, Ng SH, Gisonni-Lex L, Mallet L. Cataloguing the taxonomic origins of sequences from a heterogeneous sample using phylogenomics: applications in adventitious agent detection. Pda Journal of Pharmaceutical Science and Technology / Pda. 68: 602-18. PMID 25475635 DOI: 10.5731/Pdajpst.2014.01023 |
0.445 |
|
| 2009 |
Tillier ER, Charlebois RL. The human protein coevolution network. Genome Research. 19: 1861-71. PMID 19696150 DOI: 10.1101/Gr.092452.109 |
0.318 |
|
| 2008 |
Beiko RG, Doolittle WF, Charlebois RL. The impact of reticulate evolution on genome phylogeny. Systematic Biology. 57: 844-56. PMID 19085328 DOI: 10.1080/10635150802559265 |
0.673 |
|
| 2008 |
Koenig JE, Boucher Y, Charlebois RL, Nesbø C, Zhaxybayeva O, Bapteste E, Spencer M, Joss MJ, Stokes HW, Doolittle WF. Integron-associated gene cassettes in Halifax Harbour: assessment of a mobile gene pool in marine sediments. Environmental Microbiology. 10: 1024-38. PMID 18190517 DOI: 10.1111/J.1462-2920.2007.01524.X |
0.435 |
|
| 2007 |
Beiko RG, Charlebois RL. A simulation test bed for hypotheses of genome evolution. Bioinformatics (Oxford, England). 23: 825-31. PMID 17267425 DOI: 10.1093/Bioinformatics/Btm024 |
0.657 |
|
| 2006 |
Zhaxybayeva O, Gogarten JP, Charlebois RL, Doolittle WF, Papke RT. Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events. Genome Research. 16: 1099-108. PMID 16899658 DOI: 10.1101/Gr.5322306 |
0.473 |
|
| 2006 |
Gophna U, Charlebois RL, Doolittle WF. Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus. Trends in Microbiology. 14: 64-9. PMID 16413191 DOI: 10.1016/J.Tim.2005.12.008 |
0.541 |
|
| 2005 |
Mongodin EF, Nelson KE, Daugherty S, Deboy RT, Wister J, Khouri H, Weidman J, Walsh DA, Papke RT, Sanchez Perez G, Sharma AK, Nesbø CL, MacLeod D, Bapteste E, Doolittle WF, ... Charlebois RL, et al. The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea. Proceedings of the National Academy of Sciences of the United States of America. 102: 18147-52. PMID 16330755 DOI: 10.1073/Pnas.0509073102 |
0.53 |
|
| 2005 |
Bapteste E, Charlebois RL, MacLeod D, Brochier C. The two tempos of nuclear pore complex evolution: highly adapting proteins in an ancient frozen structure. Genome Biology. 6: R85. PMID 16207356 DOI: 10.1186/Gb-2005-6-10-R85 |
0.314 |
|
| 2005 |
Bapteste E, Susko E, Leigh J, MacLeod D, Charlebois RL, Doolittle WF. Do orthologous gene phylogenies really support tree-thinking? Bmc Evolutionary Biology. 5: 33. PMID 15913459 DOI: 10.1186/1471-2148-5-33 |
0.451 |
|
| 2005 |
MacLeod D, Charlebois RL, Doolittle F, Bapteste E. Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement. Bmc Evolutionary Biology. 5: 27. PMID 15819979 DOI: 10.1186/1471-2148-5-27 |
0.448 |
|
| 2005 |
Beiko RG, Charlebois RL. GANN: genetic algorithm neural networks for the detection of conserved combinations of features in DNA. Bmc Bioinformatics. 6: 36. PMID 15725347 DOI: 10.1186/1471-2105-6-36 |
0.597 |
|
| 2005 |
Gophna U, Doolittle WF, Charlebois RL. Weighted genome trees: refinements and applications. Journal of Bacteriology. 187: 1305-16. PMID 15687194 DOI: 10.1128/Jb.187.4.1305-1316.2005 |
0.547 |
|
| 2004 |
Charlebois RL, Doolittle WF. Computing prokaryotic gene ubiquity: rescuing the core from extinction. Genome Research. 14: 2469-77. PMID 15574825 DOI: 10.1101/Gr.3024704 |
0.546 |
|
| 2004 |
Gophna U, Charlebois RL, Doolittle WF. Have archaeal genes contributed to bacterial virulence? Trends in Microbiology. 12: 213-9. PMID 15120140 DOI: 10.1016/J.Tim.2004.03.002 |
0.408 |
|
| 2003 |
Charlebois RL, Clarke GD, Beiko RG, St Jean A. Characterization of species-specific genes using a flexible, web-based querying system. Fems Microbiology Letters. 225: 213-20. PMID 12951244 DOI: 10.1016/S0378-1097(03)00512-3 |
0.63 |
|
| 2003 |
Charlebois RL, Beiko RG, Ragan MA. Microbial phylogenomics: Branching out. Nature. 421: 217. PMID 12529621 DOI: 10.1038/421217A |
0.61 |
|
| 2002 |
Ragan MA, Charlebois RL. Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission. International Journal of Systematic and Evolutionary Microbiology. 52: 777-87. PMID 12054238 DOI: 10.1099/00207713-52-3-777 |
0.445 |
|
| 2002 |
Clarke GD, Beiko RG, Ragan MA, Charlebois RL. Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores. Journal of Bacteriology. 184: 2072-80. PMID 11914337 DOI: 10.1128/Jb.184.8.2072-2080.2002 |
0.701 |
|
| 2001 |
She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ, Chan-Weiher CC, Clausen IG, Curtis BA, De Moors A, Erauso G, Fletcher C, Gordon PM, Heikamp-de Jong I, Jeffries AC, ... ... Charlebois RL, et al. The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proceedings of the National Academy of Sciences of the United States of America. 98: 7835-40. PMID 11427726 DOI: 10.1073/Pnas.141222098 |
0.487 |
|
| 2000 |
Moracci M, Cobucci Ponzano B, Trincone A, Fusco S, De Rosa M, van Der Oost J, Sensen CW, Charlebois RL, Rossi M. Identification and molecular characterization of the first alpha -xylosidase from an archaeon. The Journal of Biological Chemistry. 275: 22082-9. PMID 10801892 DOI: 10.1074/Jbc.M910392199 |
0.31 |
|
| 2000 |
Charlebois RL, Singh RK, Chan-Weiher CC, Allard G, Chow C, Confalonieri F, Curtis B, Duguet M, Erauso G, Faguy D, Gaasterland T, Garrett RA, Gordon P, Jeffries AC, Kozera C, et al. Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2. Genome / National Research Council Canada = Gã©Nome / Conseil National De Recherches Canada. 43: 116-36. PMID 10701121 DOI: 10.1139/G99-108 |
0.496 |
|
| 2000 |
Charlebois RL, She Q, Sprott DP, Sensen CW, Garrett RA. Sulfolobus genome: from genomics to biology. Current Opinion in Microbiology. 1: 584-8. PMID 10066534 DOI: 10.1016/S1369-5274(98)80093-3 |
0.543 |
|
| 1999 |
Napoli A, van der Oost J, Sensen CW, Charlebois RL, Rossi M, Ciaramella M. An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter. Journal of Bacteriology. 181: 1474-80. PMID 10049378 DOI: 10.1128/Jb.181.5.1474-1480.1999 |
0.417 |
|
| 1998 |
Sensen CW, Charlebois RL, Chow C, Clausen IG, Curtis B, Doolittle WF, Duguet M, Erauso G, Gaasterland T, Garrett RA, Gordon P, de Jong IH, Jeffries AC, Kozera C, Medina N, et al. Completing the sequence of the Sulfolobus solfataricus P2 genome. Extremophiles : Life Under Extreme Conditions. 2: 305-12. PMID 9783178 DOI: 10.1007/S007920050073 |
0.528 |
|
| 1997 |
Charlebois RL, Sensen CW, Doolittle WF, Brown JR. Evolutionary analysis of the hisCGABdFDEHI gene cluster from the archaeon Sulfolobus solfataricus P2. Journal of Bacteriology. 179: 4429-32. PMID 9209067 DOI: 10.1128/Jb.179.13.4429-4432.1997 |
0.467 |
|
| 1997 |
Lawson FS, Charlebois RL, Dillon JA. Phylogenetic analysis of carbamoylphosphate synthetase genes: complex evolutionary history includes an internal duplication within a gene which can root the tree of life. Molecular Biology and Evolution. 13: 970-7. PMID 8752005 DOI: 10.1093/oxfordjournals.molbev.a025665 |
0.382 |
|
| 1996 |
Ragan MA, Logsdon JM, Sensen CW, Charlebois RL, Doolittle WF. An archaebacterial homolog of pelota, a meiotic cell division protein in eukaryotes. Fems Microbiology Letters. 144: 151-5. PMID 8900058 DOI: 10.1111/J.1574-6968.1996.Tb08522.X |
0.32 |
|
| 1996 |
Sensen CW, Klenk HP, Singh RK, Allard G, Chan CC, Liu QY, Penny SL, Young F, Schenk ME, Gaasterland T, Doolittle WF, Ragan MA, Charlebois RL. Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2. Molecular Microbiology. 22: 175-91. PMID 8899719 DOI: 10.1111/J.1365-2958.1996.Tb02666.X |
0.487 |
|
| 1996 |
St Jean A, Charlebois RL. Comparative genomic analysis of the Haloferax volcanii DS2 and Halobacterium salinarium GRB contig maps reveals extensive rearrangement. Journal of Bacteriology. 178: 3860-8. PMID 8682791 DOI: 10.1128/Jb.178.13.3860-3868.1996 |
0.518 |
|
| 1996 |
Charlebois RL, Gaasterland T, Ragan MA, Doolittle WF, Sensen CW. The Sulfolobus solfataricus P2 genome project. Febs Letters. 389: 88-91. PMID 8682213 DOI: 10.1016/0014-5793(96)00525-X |
0.55 |
|
| 1995 |
López-García P, St Jean A, Amils R, Charlebois RL. Genomic stability in the archaeae Haloferax volcanii and Haloferax mediterranei. Journal of Bacteriology. 177: 1405-8. PMID 7868620 DOI: 10.1128/jb.177.5.1405-1408.1995 |
0.302 |
|
| 1995 |
Charlebois RL, St Jean A. Supercoiling and map stability in the bacterial chromosome. Journal of Molecular Evolution. 41: 15-23. PMID 7608985 DOI: 10.1007/Bf00174037 |
0.46 |
|
| 1994 |
St Jean A, Trieselmann BA, Charlebois RL. Physical map and set of overlapping cosmid clones representing the genome of the archaeon Halobacterium sp. GRB. Nucleic Acids Research. 22: 1476-83. PMID 8190640 DOI: 10.1093/Nar/22.8.1476 |
0.517 |
|
| 1994 |
Keeling PJ, Charlebois RL, Doolittle WF. Archaebacterial genomes: eubacterial form and eukaryotic content. Current Opinion in Genetics & Development. 4: 816-22. PMID 7888750 DOI: 10.1016/0959-437X(94)90065-5 |
0.479 |
|
| 1993 |
Schalkwyk LC, Charlebois RL, Doolittle WF. Insertion sequences on plasmid pHV1 of Haloferax volcanii Canadian Journal of Microbiology. 39: 201-206. DOI: 10.1139/M93-028 |
0.376 |
|
| 1992 |
Trieselmann BA, Charlebois RL. Transcriptionally active regions in the genome of the archaebacterium Haloferax volcanii. Journal of Bacteriology. 174: 30-4. PMID 1729217 DOI: 10.1128/Jb.174.1.30-34.1992 |
0.427 |
|
| 1992 |
Cohen A, Lam WL, Charlebois RL, Doolittle WF, Schalkwyk LC. Localizing genes on the map of the genome of Haloferax volcanii, one of the Archaea Proceedings of the National Academy of Sciences of the United States of America. 89: 1602-1606. PMID 1311844 DOI: 10.1073/Pnas.89.5.1602 |
0.414 |
|
| 1991 |
Charlebois RL, Schalkwyk LC, Hofman JD, Doolittle WF. Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2 Journal of Molecular Biology. 222: 509-524. PMID 1748993 DOI: 10.1016/0022-2836(91)90493-P |
0.422 |
|
| 1989 |
Charlebois RL, Hofman JD, Schalkwyk LC, Lam WL, Doolittle WF. Genome mapping in halobacteria Canadian Journal of Microbiology. 35: 21-29. PMID 2470484 DOI: 10.1139/m89-004 |
0.386 |
|
| 1987 |
Charlebois RL, Lam WL, Cline SW, Doolittle WF. Characterization of pHV2 from Halobacterium volcanii and its use in demonstrating transformation of an archaebacterium Proceedings of the National Academy of Sciences of the United States of America. 84: 8530-8534. PMID 2825193 DOI: 10.1073/Pnas.84.23.8530 |
0.302 |
|
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