| Year |
Citation |
Score |
| 2012 |
Kandarian B, Sethi J, Wu A, Baker M, Yazdani N, Kym E, Sanchez A, Edsall L, Gaasterland T, Macagno E. The medicinal leech genome encodes 21 innexin genes: Different combinations are expressed by identified central neurons Development Genes and Evolution. 222: 29-44. PMID 22358128 DOI: 10.1007/s00427-011-0387-z |
0.341 |
|
| 2011 |
Taneri B, Snyder B, Novoradovsky A, Gaasterland T. Alternative splicing in the fly and the worm: Splicing databases for drosophila melanogaster and caenorhabditis elegans Proceedings - International Workshop On Database and Expert Systems Applications, Dexa. 435-439. DOI: 10.1109/DEXA.2011.10 |
0.311 |
|
| 2010 |
Macagno ER, Gaasterland T, Edsall L, Bafna V, Soares MB, Scheetz T, Casavant T, Da Silva C, Wincker P, Tasiemski A, Salzet M. Construction of a medicinal leech transcriptome database and its application to the identification of leech homologs of neural and innate immune genes. Bmc Genomics. 11: 407. PMID 20579359 DOI: 10.1186/1471-2164-11-407 |
0.301 |
|
| 2007 |
Li X, Wang XJ, Tannenhauser J, Podell S, Mukherjee P, Hertel M, Biane J, Masuda S, Nottebohm F, Gaasterland T. Genomic resources for songbird research and their use in characterizing gene expression during brain development. Proceedings of the National Academy of Sciences of the United States of America. 104: 6834-9. PMID 17426146 DOI: 10.1073/Pnas.0701619104 |
0.32 |
|
| 2007 |
Sobral RG, Jones AE, Des Etages SG, Dougherty TJ, Peitzsch RM, Gaasterland T, Ludovice AM, De Lencastre H, Tomasz A. Extensive and genome-wide changes in the transcription profile of Staphylococcus aureus induced by modulating the transcription of the cell wall synthesis gene murF Journal of Bacteriology. 189: 2376-2391. PMID 17194794 DOI: 10.1128/JB.01439-06 |
0.39 |
|
| 2006 |
Landry DM, Gaasterland T, Palenik BP. Molecular characterization of a phosphate-regulated cell-surface protein from the coccolithophorid, Emiliania huxleyi (Prymnesiophyceae) Journal of Phycology. 42: 814-821. DOI: 10.1111/J.1529-8817.2006.00247.X |
0.34 |
|
| 2003 |
Hoth S, Ikeda Y, Morgante M, Wang X, Zuo J, Hanafey MK, Gaasterland T, Tingey SV, Chua NH. Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana. Febs Letters. 554: 373-80. PMID 14623097 DOI: 10.1016/S0014-5793(03)01194-3 |
0.353 |
|
| 2003 |
Kim U, Siegel R, Ren X, Gunther CS, Gaasterland T, Roeder RG. Identification of transcription coactivator OCA-B-dependent genes involved in antigen-dependent B cell differentiation by cDNA array analyses. Proceedings of the National Academy of Sciences of the United States of America. 100: 8868-73. PMID 12857960 DOI: 10.1073/Pnas.1033108100 |
0.48 |
|
| 2001 |
Gunther CS, Gaasterland T. Characterizing the relationship between protein-fusion and gene co-expression. Genome Informatics. International Conference On Genome Informatics. 12: 34-43. PMID 11791222 DOI: 10.11234/Gi1990.12.34 |
0.486 |
|
| 2001 |
Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M. A functional update of the Escherichia coli K-12 genome Genome Biology. 2: RESEARCH0035. PMID 11574054 DOI: 10.1186/Gb-2001-2-9-Research0035 |
0.309 |
|
| 2001 |
Gaasterland T, Oprea M. Whole-genome analysis: Annotations and updates Current Opinion in Structural Biology. 11: 377-381. PMID 11406390 DOI: 10.1016/S0959-440X(00)00213-X |
0.366 |
|
| 2001 |
Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Eduardo Fajardo J, Eswar N, Sanchez R, Sali A, Gaasterland T. Homology-based annotation yields 1,042 new candidate genes in the drosophila melanogaster genome Nature Genetics. 27: 337-340. PMID 11242120 DOI: 10.1038/85922 |
0.385 |
|
| 2001 |
Sivaraman J, Li Y, Plamondon J, Larocque R, Raymond S, Sauvé V, Smith C, Boju L, Schrag J, Matte A, Gaasterland T, Cygler M. A structural genomics pilot project based on gene targets selected from Escherichia coli Journal of Crystal Growth. 232: 421-425. DOI: 10.1016/S0022-0248(01)01155-1 |
0.336 |
|
| 1999 |
Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK, Saffer JD. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199 Journal of Bacteriology. 181: 1585-1602. PMID 10049392 DOI: 10.1128/Jb.181.5.1585-1602.1999 |
0.312 |
|
| 1992 |
Gaasterland T, Godfrey P, Minker J. Relaxation as a platform for cooperative answering Journal of Intelligent Information Systems. 1: 293-321. DOI: 10.1007/Bf00962922 |
0.528 |
|
| 1992 |
Gaasterland T, Godfrey P, Minker J. An overview of cooperative answering Journal of Intelligent Information Systems. 1: 123-157. DOI: 10.1007/Bf00962280 |
0.524 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2007 |
Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, et al. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proceedings of the National Academy of Sciences of the United States of America. 104: 7705-10. PMID 17460045 DOI: 10.1073/Pnas.0611046104 |
0.297 |
|
| 2000 |
Charlebois RL, Singh RK, Chan-Weiher CC, Allard G, Chow C, Confalonieri F, Curtis B, Duguet M, Erauso G, Faguy D, Gaasterland T, Garrett RA, Gordon P, Jeffries AC, Kozera C, et al. Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2. Genome / National Research Council Canada = Gã©Nome / Conseil National De Recherches Canada. 43: 116-36. PMID 10701121 DOI: 10.1139/G99-108 |
0.296 |
|
| 2008 |
Podell S, Gaasterland T, Allen EE. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. Bmc Bioinformatics. 9: 419. PMID 18840280 DOI: 10.1186/1471-2105-9-419 |
0.29 |
|
| 2001 |
Altmann CR, Bell E, Sczyrba A, Pun J, Bekiranov S, Gaasterland T, Brivanlou AH. Microarray-based analysis of early development in Xenopus laevis. Developmental Biology. 236: 64-75. PMID 11456444 DOI: 10.1006/dbio.2001.0298 |
0.277 |
|
| 2011 |
Sopher BL, Ladd PD, Pineda VV, Libby RT, Sunkin SM, Hurley JB, Thienes CP, Gaasterland T, Filippova GN, La Spada AR. CTCF regulates ataxin-7 expression through promotion of a convergently transcribed, antisense noncoding RNA. Neuron. 70: 1071-84. PMID 21689595 DOI: 10.1016/J.Neuron.2011.05.027 |
0.276 |
|
| 2001 |
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, ... ... Gaasterland T, et al. Functional annotation of a full-length mouse cDNA collection. Nature. 409: 685-90. PMID 11217851 DOI: 10.1038/35055500 |
0.271 |
|
| 2013 |
Brafman DA, Moya N, Allen-Soltero S, Fellner T, Robinson M, McMillen ZL, Gaasterland T, Willert K. Analysis of SOX2-expressing cell populations derived from human pluripotent stem cells. Stem Cell Reports. 1: 464-78. PMID 24286033 DOI: 10.1016/J.Stemcr.2013.09.005 |
0.267 |
|
| 2003 |
Ravasi T, Huber T, Zavolan M, Forrest A, Gaasterland T, Grimmond S, Arakawa T, Carninci P, Kawai J, Hayashizaki Y. Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome Genome Research. 13: 1430-1442. PMID 12819142 DOI: 10.1101/gr.949803 |
0.252 |
|
| 2002 |
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, ... ... Gaasterland T, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 420: 563-73. PMID 12466851 DOI: 10.1038/Nature01266 |
0.251 |
|
| 2001 |
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genetics. 29: 365-71. PMID 11726920 DOI: 10.1038/Ng1201-365 |
0.246 |
|
| 2005 |
Taneri B, Novoradovsky A, Snyder B, Gaasterland T. Databases for comparative analysis of human-mouse orthologous alternative splicing Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3388: 123-131. |
0.243 |
|
| 2001 |
She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ, Chan-Weiher CC, Clausen IG, Curtis BA, De Moors A, Erauso G, Fletcher C, Gordon PM, Heikamp-de Jong I, Jeffries AC, ... ... Gaasterland T, et al. The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proceedings of the National Academy of Sciences of the United States of America. 98: 7835-40. PMID 11427726 DOI: 10.1073/Pnas.141222098 |
0.242 |
|
| 2002 |
Arisue N, Hashimot T, Lee JA, Moore DV, Gordon P, Sensen CW, Gaasterland T, Hasegawa M, Müller M. The phylogenetic position of the pelobiont Mastigamoeba balamuthi based on sequences of rDNA and translation elongation factors EF-1alpha and EF-2. The Journal of Eukaryotic Microbiology. 49: 1-10. PMID 11908892 |
0.238 |
|
| 2002 |
Bapteste E, Brinkmann H, Lee JA, Moore DV, Sensen CW, Gordon P, Duruflé L, Gaasterland T, Lopez P, Müller M, Philippe H. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proceedings of the National Academy of Sciences of the United States of America. 99: 1414-9. PMID 11830664 DOI: 10.1073/pnas.032662799 |
0.234 |
|
| 2002 |
Zavolan M, Van Nimwegen E, Gaasterland T. Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome Genome Research. 12: 1377-1385. PMID 12213775 DOI: 10.1101/gr.191702 |
0.234 |
|
| 1996 |
Sensen CW, Klenk HP, Singh RK, Allard G, Chan CC, Liu QY, Penny SL, Young F, Schenk ME, Gaasterland T, Doolittle WF, Ragan MA, Charlebois RL. Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2. Molecular Microbiology. 22: 175-91. PMID 8899719 DOI: 10.1111/J.1365-2958.1996.Tb02666.X |
0.233 |
|
| 2003 |
Zavolan M, Kondo S, Schönbach C, Adachi J, Hume DA, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Gaasterland T. Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome Genome Research. 13: 1290-1300. PMID 12819126 DOI: 10.1101/gr.1017303 |
0.233 |
|
| 1998 |
Gaasterland T, Ragan MA. Constructing multigenome views of whole microbial genomes. Microbial & Comparative Genomics. 3: 177-92. PMID 9775388 DOI: 10.1089/Omi.1.1998.3.177 |
0.232 |
|
| 2007 |
Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T. Computational prediction and experimental validation of Ciona intestinalis microRNA genes. Bmc Genomics. 8: 445. PMID 18047675 DOI: 10.1186/1471-2164-8-445 |
0.227 |
|
| 2007 |
Podell S, Gaasterland T. DarkHorse: A method for genome-wide prediction of horizontal gene transfer Genome Biology. 8. PMID 17274820 DOI: 10.1186/gb-2007-8-2-r16 |
0.224 |
|
| 2000 |
Gaasterland T, Sczyrba A, Thomas E, Aytekin-Kurban G, Gordon P, Sensen CW. MAGPIE/EGRET annotation of the 2.9-mb Drosophila melanogaster Adh region Genome Research. 10: 502-510. PMID 10779489 DOI: 10.1101/gr.10.4.502 |
0.222 |
|
| 2013 |
Wiggs JL, Hauser MA, Abdrabou W, Allingham RR, Budenz DL, Delbono E, Friedman DS, Kang JH, Gaasterland D, Gaasterland T, Lee RK, Lichter PR, Loomis S, Liu Y, McCarty C, et al. The NEIGHBOR consortium primary open-angle glaucoma genome-wide association study: rationale, study design, and clinical variables. Journal of Glaucoma. 22: 517-25. PMID 22828004 DOI: 10.1097/Ijg.0B013E31824D4Fd8 |
0.219 |
|
| 2000 |
Hannaert V, Brinkmann H, Nowitzki U, Lee JA, Albert MA, Sensen CW, Gaasterland T, Müller M, Michels P, Martin W. Enolase from Trypanosoma brucei, from the amitochondriate protist Mastigamoeba balamuthi, and from the chloroplast and cytosol of Euglena gracilis: Pieces in the evolutionary puzzle of the eukaryotic glycolytic pathway Molecular Biology and Evolution. 17: 989-1000. PMID 10889212 DOI: 10.1093/Oxfordjournals.Molbev.A026395 |
0.215 |
|
| 1996 |
Charlebois RL, Gaasterland T, Ragan MA, Doolittle WF, Sensen CW. The Sulfolobus solfataricus P2 genome project. Febs Letters. 389: 88-91. PMID 8682213 DOI: 10.1016/0014-5793(96)00525-X |
0.214 |
|
| 2004 |
Taneri B, Snyder B, Novoradovsky A, Gaasterland T. Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific Genome Biology. 5. PMID 15461794 |
0.213 |
|
| 2005 |
Wang XJ, Gaasterland T, Chua NH. Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana. Genome Biology. 6: R30. PMID 15833117 DOI: 10.1186/Gb-2005-6-4-R30 |
0.211 |
|
| 2009 |
Taneri B, Novoradovsky A, Gaasterland T. Identification of shadow exons: Mining for alternative exons in human, mouse and rat comparative databases Proceedings - International Workshop On Database and Expert Systems Applications, Dexa. 208-212. DOI: 10.1109/DEXA.2009.43 |
0.208 |
|
| 1998 |
Ragan MA, Gaasterland T. Microbial genescapes: a prokaryotic view of the yeast genome. Microbial & Comparative Genomics. 3: 219-35. PMID 10027191 DOI: 10.1089/Omi.1.1998.3.219 |
0.204 |
|
| 2014 |
Allison KA, Kaikkonen MU, Gaasterland T, Glass CK. Vespucci: a system for building annotated databases of nascent transcripts. Nucleic Acids Research. 42: 2433-47. PMID 24304890 DOI: 10.1093/nar/gkt1237 |
0.203 |
|
| 2013 |
Pasquale LR, Loomis SJ, Weinreb RN, Kang JH, Yaspan BL, Bailey JC, Gaasterland D, Gaasterland T, Lee RK, Scott WK, Lichter PR, Budenz DL, Liu Y, Realini T, Friedman DS, et al. Estrogen pathway polymorphisms in relation to primary open angle glaucoma: an analysis accounting for gender from the United States. Molecular Vision. 19: 1471-81. PMID 23869166 |
0.189 |
|
| 2014 |
Fernandez A, Huggins IJ, Perna L, Brafman D, Lu D, Yao S, Gaasterland T, Carson DA, Willert K. The WNT receptor FZD7 is required for maintenance of the pluripotent state in human embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 111: 1409-14. PMID 24474766 DOI: 10.1073/Pnas.1323697111 |
0.186 |
|
| 2014 |
Liu Y, Garrett ME, Yaspan BL, Bailey JC, Loomis SJ, Brilliant M, Budenz DL, Christen WG, Fingert JH, Gaasterland D, Gaasterland T, Kang JH, Lee RK, Lichter P, Moroi SE, et al. DNA copy number variants of known glaucoma genes in relation to primary open-angle glaucoma. Investigative Ophthalmology & Visual Science. 55: 8251-8. PMID 25414181 DOI: 10.1167/Iovs.14-15712 |
0.186 |
|
| 1998 |
Gaasterland T, Ragan MA. Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes. Microbial & Comparative Genomics. 3: 199-217. PMID 10027190 DOI: 10.1089/Omi.1.1998.3.199 |
0.185 |
|
| 2005 |
Bonanno JB, Almo SC, Bresnick A, Chance MR, Fiser A, Swaminathan S, Jiang J, Studier FW, Shapiro L, Lima CD, Gaasterland TM, Sali A, Bain K, Feil I, Gao X, et al. New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative. Journal of Structural and Functional Genomics. 6: 225-32. PMID 16211523 DOI: 10.1007/S10969-005-6827-0 |
0.181 |
|
| 2001 |
Müller M, Lee JA, Gordon P, Gaasterland T, Sensen CW. Presence of prokaryotic and eukaryotic species in all subgroups of the PP i-dependent group II phosphofructokinase protein family Journal of Bacteriology. 183: 6714-6716. PMID 11673446 DOI: 10.1128/JB.183.22.6714-6716.2001 |
0.179 |
|
| 2010 |
Junier P, Junier T, Podell S, Sims DR, Detter JC, Lykidis A, Han CS, Wigginton NS, Gaasterland T, Bernier-Latmani R. The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1 Environmental Microbiology. 12: 2738-2754. PMID 20482743 DOI: 10.1111/j.1462-2920.2010.02242.x |
0.172 |
|
| 2003 |
Gopal S, Cross GA, Gaasterland T. An organism-specific method to rank predicted coding regions in Trypanosoma brucei. Nucleic Acids Research. 31: 5877-85. PMID 14530436 DOI: 10.1093/Nar/Gkg798 |
0.169 |
|
| 2000 |
Gaasterland T, Bekiranov S. Making the most of microarray data Nature Genetics. 24: 204-206. PMID 10700163 DOI: 10.1038/73392 |
0.167 |
|
| 2002 |
Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, et al. Standards for microarray data. Science (New York, N.Y.). 298: 539. PMID 12387284 DOI: 10.1126/Science.298.5593.539B |
0.163 |
|
| 2015 |
Kumar N, Richter J, Cutts J, Bush KT, Trujillo C, Nigam SK, Gaasterland T, Brafman D, Willert K. Generation of an expandable intermediate mesoderm restricted progenitor cell line from human pluripotent stem cells. Elife. 4. PMID 26554899 DOI: 10.7554/Elife.08413 |
0.159 |
|
| 2001 |
Ehrt S, Schnappinger D, Bekiranov S, Drenkow J, Shi S, Gingeras TR, Gaasterland T, Schoolnik G, Nathan C. Reprogramming of the macrophage transcriptome in response to interferon-gamma and Mycobacterium tuberculosis: signaling roles of nitric oxide synthase-2 and phagocyte oxidase. The Journal of Experimental Medicine. 194: 1123-40. PMID 11602641 DOI: 10.1084/Jem.194.8.1123 |
0.158 |
|
| 2011 |
Norden-Krichmar TM, Allen AE, Gaasterland T, Hildebrand M. Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana. Plos One. 6: e22870. PMID 21857960 DOI: 10.1371/Journal.Pone.0022870 |
0.158 |
|
| 2011 |
Meriaux C, Arafah K, Tasiemski A, Wisztorski M, Bruand J, Boidin-Wichlacz C, Desmons A, Debois D, Laprévote O, Brunelle A, Gaasterland T, Macagno E, Fournier I, Salzet M. Multiple changes in peptide and lipid expression associated with regeneration in the nervous system of the medicinal leech. Plos One. 6: e18359. PMID 21526169 DOI: 10.1371/Journal.Pone.0018359 |
0.156 |
|
| 2012 |
Taneri B, Asilmaz E, Gaasterland T. Biomedical impact of splicing mutations revealed through exome sequencing Molecular Medicine. 18: 314-319. PMID 22160217 DOI: 10.2119/molmed.2011.00126 |
0.156 |
|
| 1998 |
Deckert G, Warren PV, Gaasterland T, Young WG, Lenox AL, Graham DE, Overbeek R, Snead MA, Keller M, Aujay M, Huber R, Feldman RA, Short JM, Olsen GJ, Swanson RV. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature. 392: 353-8. PMID 9537320 DOI: 10.1038/32831 |
0.155 |
|
| 2006 |
Ule J, Stefani G, Mele A, Ruggiu M, Wang X, Taneri B, Gaasterland T, Blencowe BJ, Darnell RB. An RNA map predicting Nova-dependent splicing regulation. Nature. 444: 580-6. PMID 17065982 DOI: 10.1038/Nature05304 |
0.154 |
|
| 2008 |
Gopal S, Gaasterland T. Automated Genome Annotation and Comparative Genomics Biotechnology: Second, Completely Revised Edition. 5: 361-378. DOI: 10.1002/9783527620876.ch16 |
0.153 |
|
| 1999 |
Burley SK, Almo SC, Bonanno JB, Capel M, Chance MR, Gaasterland T, Lin D, Sali A, Studier FW, Swaminathan S. Structural genomics: beyond the human genome project. Nature Genetics. 23: 151-7. PMID 10508510 DOI: 10.1038/13783 |
0.152 |
|
| 2013 |
Bauer M, Bénard J, Gaasterland T, Willert K, Cappellen D. WNT5A encodes two isoforms with distinct functions in cancers. Plos One. 8: e80526. PMID 24260410 DOI: 10.1371/Journal.Pone.0080526 |
0.152 |
|
| 2012 |
Cukras C, Gaasterland T, Lee P, Gudiseva HV, Chavali VR, Pullakhandam R, Maranhao B, Edsall L, Soares S, Reddy GB, Sieving PA, Ayyagari R. Exome analysis identified a novel mutation in the RBP4 gene in a consanguineous pedigree with retinal dystrophy and developmental abnormalities. Plos One. 7: e50205. PMID 23189188 DOI: 10.1371/Journal.Pone.0050205 |
0.15 |
|
| 2002 |
Gaasterland T, Orengo CA. Editorial overview: Genomic insights into evolution Current Opinion in Structural Biology. 12: 345-347. PMID 12127453 DOI: 10.1016/S0959-440X(02)00329-9 |
0.148 |
|
| 2012 |
Van Nieuwerburgh F, Thompson RC, Ledesma J, Deforce D, Gaasterland T, Ordoukhanian P, Head SR. Illumina mate-paired DNA sequencing-library preparation using Cre-Lox recombination. Nucleic Acids Research. 40: e24. PMID 22127871 DOI: 10.1093/nar/gkr1000 |
0.144 |
|
| 1996 |
Gaasterland T, Sensen CW. MAGPIE: Automated genome interpretation Trends in Genetics. 12: 76-78. PMID 8851977 DOI: 10.1016/0168-9525(96)81406-5 |
0.143 |
|
| 1998 |
Sensen CW, Charlebois RL, Chow C, Clausen IG, Curtis B, Doolittle WF, Duguet M, Erauso G, Gaasterland T, Garrett RA, Gordon P, de Jong IH, Jeffries AC, Kozera C, Medina N, et al. Completing the sequence of the Sulfolobus solfataricus P2 genome. Extremophiles : Life Under Extreme Conditions. 2: 305-12. PMID 9783178 DOI: 10.1007/S007920050073 |
0.143 |
|
| 2001 |
Kreitman M, Gaasterland T. Editorial overview: Genomes and evolution ships in the night? Current Opinion in Genetics and Development. 11: 609-611. DOI: 10.1016/S0959-437X(00)00241-0 |
0.141 |
|
| 2007 |
Chang EJ, Begum R, Chait BT, Gaasterland T. XPrediction of cyclin-dependent kinase phosphorylation substrates Plos One. 2. PMID 17668044 DOI: 10.1371/Journal.Pone.0000656 |
0.137 |
|
| 2008 |
Dick GJ, Podell S, Johnson HA, Rivera-Espinoza Y, Bernier-Latmani R, McCarthy JK, Torpey JW, Clement BG, Gaasterland T, Tebo BM. Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1. Applied and Environmental Microbiology. 74: 2646-58. PMID 18344346 DOI: 10.1128/Aem.01656-07 |
0.136 |
|
| 2005 |
Gopal S, Awadalla S, Gaasterland T, Cross GA. A computational investigation of kinetoplastid trans-splicing. Genome Biology. 6: R95. PMID 16277750 DOI: 10.1186/Gb-2005-6-11-R95 |
0.136 |
|
| 1999 |
Gaasterland T. Archaeal genomics Current Opinion in Microbiology. 2: 542-547. PMID 10508726 DOI: 10.1016/S1369-5274(99)00014-4 |
0.133 |
|
| 2016 |
Bailey JN, Loomis SJ, Kang JH, Allingham RR, Gharahkhani P, Khor CC, Burdon KP, Aschard H, Chasman DI, Igo RP, Hysi PG, Glastonbury CA, Ashley-Koch A, Brilliant M, Brown AA, ... ... Gaasterland T, et al. Genome-wide association analysis identifies TXNRD2, ATXN2 and FOXC1 as susceptibility loci for primary open-angle glaucoma. Nature Genetics. PMID 26752265 DOI: 10.1038/Ng.3482 |
0.133 |
|
| 1996 |
Gaasterland T, Sensen CW. Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture Biochimie. 78: 302-310. PMID 8905148 DOI: 10.1016/0300-9084(96)84761-4 |
0.132 |
|
| 2015 |
Dickey AS, Pineda VV, Tsunemi T, Liu PP, Miranda HC, Gilmore-Hall SK, Lomas N, Sampat KR, Buttgereit A, Torres MM, Flores AL, Arreola M, Arbez N, Akimov SS, Gaasterland T, et al. PPAR-δ is repressed in Huntington's disease, is required for normal neuronal function and can be targeted therapeutically. Nature Medicine. PMID 26642438 DOI: 10.1038/Nm.4003 |
0.132 |
|
| 2007 |
Zhang H, Hou Y, Miranda L, Campbell DA, Sturm NR, Gaasterland T, Lin S. Spliced leader RNA trans-splicing in dinoflagellates. Proceedings of the National Academy of Sciences of the United States of America. 104: 4618-23. PMID 17360573 DOI: 10.1073/Pnas.0700258104 |
0.129 |
|
| 2008 |
Robidart JC, Bench SR, Feldman RA, Novoradovsky A, Podell SB, Gaasterland T, Allen EE, Felbeck H. Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics. Environmental Microbiology. 10: 727-37. PMID 18237306 DOI: 10.1111/J.1462-2920.2007.01496.X |
0.128 |
|
| 2014 |
Bailey JN, Yaspan BL, Pasquale LR, Hauser MA, Kang JH, Loomis SJ, Brilliant M, Budenz DL, Christen WG, Fingert J, Gaasterland D, Gaasterland T, Kraft P, Lee RK, Lichter PR, et al. Hypothesis-independent pathway analysis implicates GABA and acetyl-CoA metabolism in primary open-angle glaucoma and normal-pressure glaucoma. Human Genetics. 133: 1319-30. PMID 25037249 DOI: 10.1007/S00439-014-1468-7 |
0.127 |
|
| 1997 |
Gaasterland T, Lobo J. Qualifying answers according to user needs and preferences Fundamenta Informaticae. 32: 121-137. |
0.126 |
|
| 1994 |
Gaasterland T, Maltsev N, Lobo J, Chen GH. Assigning function to CDS through qualified query answering: beyond alignment and motifs Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 2: 130-137. PMID 7584382 |
0.123 |
|
| 1998 |
Gaasterland T. Structural genomics: Bioinformatics in the driver's seat Nature Biotechnology. 16: 625-627. PMID 9661193 DOI: 10.1038/nbt0798-625 |
0.115 |
|
| 1998 |
Gaasterland T. Structural genomics taking shape Trends in Genetics. 14: 135. PMID 9594659 DOI: 10.1016/S0168-9525(98)01430-9 |
0.115 |
|
| 1993 |
Gaasterland T, Lobo J. Processing negation and disjunction in logic programs through integrity constraints Journal of Intelligent Information Systems. 2: 225-243. DOI: 10.1007/BF00962069 |
0.112 |
|
| 2003 |
Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T. The small RNA profile during Drosophila melanogaster development. Developmental Cell. 5: 337-50. PMID 12919683 DOI: 10.1016/S1534-5807(03)00228-4 |
0.112 |
|
| 2008 |
Gordon P, Gaasterland T, Sensen CW. Genomic Data Representation through Images-Magpie as an Example Biotechnology: Second, Completely Revised Edition. 5: 379-397. DOI: 10.1002/9783527620876.ch17 |
0.107 |
|
| 2014 |
Kang JH, Loomis SJ, Yaspan BL, Bailey JC, Weinreb RN, Lee RK, Lichter PR, Budenz DL, Liu Y, Realini T, Gaasterland D, Gaasterland T, Friedman DS, McCarty CA, Moroi SE, et al. Vascular tone pathway polymorphisms in relation to primary open-angle glaucoma. Eye (London, England). 28: 662-71. PMID 24603425 DOI: 10.1038/Eye.2014.42 |
0.104 |
|
| 2006 |
Cui C, Griffiths A, Li G, Silva LM, Kramer MF, Gaasterland T, Wang XJ, Coen DM. Prediction and identification of herpes simplex virus 1-encoded microRNAs. Journal of Virology. 80: 5499-508. PMID 16699030 DOI: 10.1128/Jvi.00200-06 |
0.104 |
|
| 1995 |
Gaasterland T, Selkov E. Reconstruction of metabolic networks using incomplete information Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 3: 127-135. PMID 7584429 |
0.103 |
|
| 2016 |
Berger B, Gaasterland T, Lengauer T, Orengo C, Gaeta B, Markel S, Valencia A. ISCB's Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing. Plos Computational Biology. 12: e1004816. PMID 27010398 DOI: 10.1371/Journal.Pcbi.1004816 |
0.103 |
|
| 2011 |
Bruand J, Sistla S, Mériaux C, Dorrestein PC, Gaasterland T, Ghassemian M, Wisztorski M, Fournier I, Salzet M, Macagno E, Bafna V. Automated querying and identification of novel peptides using MALDI mass spectrometric imaging. Journal of Proteome Research. 10: 1915-28. PMID 21332220 DOI: 10.1021/Pr101159E |
0.101 |
|
| 2007 |
Dorr BJ, Gaasterland T. Exploiting aspectual features and connecting words for summarization-inspired temporal-relation extraction Information Processing and Management. 43: 1681-1704. DOI: 10.1016/j.ipm.2007.01.008 |
0.097 |
|
| 1997 |
Gaasterland T. Cooperative answering through controlled query relaxation Ieee Expert-Intelligent Systems and Their Applications. 12: 48-59. DOI: 10.1109/64.621228 |
0.096 |
|
| 2014 |
Dubinsky AN, Dastidar SG, Hsu CL, Zahra R, Djakovic SN, Duarte S, Esau CC, Spencer B, Ashe TD, Fischer KM, MacKenna DA, Sopher BL, Masliah E, Gaasterland T, Chau BN, et al. Let-7 coordinately suppresses components of the amino acid sensing pathway to repress mTORC1 and induce autophagy. Cell Metabolism. 20: 626-38. PMID 25295787 DOI: 10.1016/J.Cmet.2014.09.001 |
0.087 |
|
| 2004 |
Wang XJ, Reyes JL, Chua NH, Gaasterland T. Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biology. 5: R65. PMID 15345049 DOI: 10.1186/Gb-2004-5-9-R65 |
0.081 |
|
| 2014 |
Loomis SJ, Kang JH, Weinreb RN, Yaspan BL, Cooke Bailey JN, Gaasterland D, Gaasterland T, Lee RK, Lichter PR, Budenz DL, Liu Y, Realini T, Friedman DS, McCarty CA, Moroi SE, et al. Association of CAV1/CAV2 genomic variants with primary open-angle glaucoma overall and by gender and pattern of visual field loss. Ophthalmology. 121: 508-16. PMID 24572674 DOI: 10.1016/J.Ophtha.2013.09.012 |
0.08 |
|
| 1996 |
Selkov E, Basmanova S, Gaasterland T, Goryanin I, Gretchkin Y, Maltsev N, Nenashev V, Overbeek R, Panyushkina E, Pronevitch L, Yunus L. The metabolic pathway collection from EMP: The enzymes and metabolic pathways database Nucleic Acids Research. 24: 26-28. PMID 8594593 DOI: 10.1093/nar/24.1.26 |
0.077 |
|
| 2012 |
Duncan JL, Roorda A, Navani M, Vishweswaraiah S, Syed R, Soudry S, Ratnam K, Gudiseva HV, Lee P, Gaasterland T, Ayyagari R. Identification of a novel mutation in the CDHR1 gene in a family with recessive retinal degeneration. Archives of Ophthalmology (Chicago, Ill. : 1960). 130: 1301-8. PMID 23044944 DOI: 10.1001/Archophthalmol.2012.1906 |
0.077 |
|
| 2012 |
Rost B, Gaasterland T, Lengauer T, Linial M, Markel S, Morrison McKay BJ, Schneider R, Horton P, Kelso J. Paving the future: finding suitable ISMB venues. Bioinformatics (Oxford, England). 28: 2556-9. PMID 22796959 DOI: 10.1093/Bioinformatics/Bts420 |
0.075 |
|
| 1995 |
Robles C, Lobo J, Gaasterland T. An experimental distributed deductive database system Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1013: 128-142. |
0.071 |
|
| 2002 |
Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, et al. A guide to microarray experiments - An open letter to the scientific journals [1] Lancet. 360: 1019. PMID 12383684 |
0.07 |
|
| 2014 |
Moya N, Cutts J, Gaasterland T, Willert K, Brafman DA. Endogenous WNT signaling regulates hPSC-derived neural progenitor cell heterogeneity and specifies their regional identity. Stem Cell Reports. 3: 1015-28. PMID 25458891 DOI: 10.1016/J.Stemcr.2014.10.004 |
0.07 |
|
| 2013 |
Pasquale LR, Loomis SJ, Kang JH, Yaspan BL, Abdrabou W, Budenz DL, Chen TC, Delbono E, Friedman DS, Gaasterland D, Gaasterland T, Grosskreutz CL, Lee RK, Lichter PR, Liu Y, et al. CDKN2B-AS1 genotype-glaucoma feature correlations in primary open-angle glaucoma patients from the United States. American Journal of Ophthalmology. 155: 342-353.e5. PMID 23111177 DOI: 10.1016/J.Ajo.2012.07.023 |
0.067 |
|
| 2011 |
Gaasterland T, Vingron M. This special issue comprises the papers accepted for presentationat the 19th Annual International Conference on Intelligent Systemsfor Molecular Biology, joint with the 10th European Conference onComputational Biology, an official conference of the InternationalSociety for Computational Biology Bioinformatics (Oxford, England). 27. PMID 21685057 DOI: 10.1093/Bioinformatics/Btr302 |
0.063 |
|
| 2012 |
Wiggs JL, Yaspan BL, Hauser MA, Kang JH, Allingham RR, Olson LM, Abdrabou W, Fan BJ, Wang DY, Brodeur W, Budenz DL, Caprioli J, Crenshaw A, Crooks K, Delbono E, ... ... Gaasterland T, et al. Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma. Plos Genetics. 8: e1002654. PMID 22570617 DOI: 10.1371/Journal.Pgen.1002654 |
0.06 |
|
| 2016 |
Valencia A, Markel S, Gaeta B, Gaasterland T, Lengauer T, Berger B, Orengo C. ISCB's initial reaction to New England Journal of Medicine editorial on data sharing. F1000research. 5. PMID 26998241 DOI: 10.12688/F1000Research.8051.1 |
0.052 |
|
| 2005 |
Gaasterland T, Jagadish HV, Raschid L. Special issue on data management, analysis, and mining for the life sciences Vldb Journal. 14: 279-280. DOI: 10.1007/s00778-005-0165-5 |
0.048 |
|
| 2002 |
Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, et al. An open letter to the scientific journals Bioinformatics. 18: 1409. |
0.035 |
|
| 2005 |
Novoradovsky A, Zhang V, Ghosh M, Hogrefe H, Sorge JA, Gaasterland T. Computational principles of primer design for site directed mutagenesis 2005 Nsti Nanotechnology Conference and Trade Show - Nsti Nanotech 2005 Technical Proceedings. 532-535. |
0.034 |
|
| 2012 |
Lee PL, Gaasterland T, Barton JC. Mild iron overload in an African American man with SLC40A1 D270V. Acta Haematologica. 128: 28-32. PMID 22584997 DOI: 10.1159/000337034 |
0.033 |
|
| 2002 |
Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, et al. The underlying principles of scientific publication. Bioinformatics (Oxford, England). 18: 1409. PMID 12424109 DOI: 10.1093/Bioinformatics/18.11.1409 |
0.032 |
|
| 2011 |
Gaasterland T, Vingron M. Editorial Bioinformatics. 27. DOI: 10.1093/bioinformatics/btr302 |
0.01 |
|
| Hide low-probability matches. |