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Robert A. Bambara - Publications

Affiliations: 
University of Rochester, Rochester, NY 
Area:
Molecular Biology, Microbiology Biology, Biochemistry
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207 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Njeri C, Pepenella S, Battapadi T, Bambara RA, Balakrishnan L. DNA Polymerase Delta Exhibits Altered Catalytic Properties on Lysine Acetylation. Genes. 14. PMID 37107532 DOI: 10.3390/genes14040774  0.827
2020 Piekna-Przybylska D, Bambara RA, Maggirwar SB, Dewhurst S. G-quadruplex ligands targeting telomeres do not inhibit HIV promoter activity and cooperate with latency reversing agents in killing latently infected cells. Cell Cycle (Georgetown, Tex.). 1-16. PMID 32807015 DOI: 10.1080/15384101.2020.1796268  0.395
2018 Chamberlain J, Sortino K, Sethna P, Bae A, Lanier R, Bambara RA, Dewhurst S. Cidofovir Diphosphate Inhibits Adenovirus 5 DNA Polymerase via Both Non-Obligate Chain Termination and Direct Inhibition, and Polymerase Mutations Confer Cidofovir Resistance on Intact Virus. Antimicrobial Agents and Chemotherapy. PMID 30397065 DOI: 10.1128/Aac.01925-18  0.522
2017 Piekna-Przybylska D, Sharma G, Maggirwar SB, Bambara RA. Deficiency in DNA damage response, a new characteristic of cells infected with latent HIV-1. Cell Cycle (Georgetown, Tex.). 0. PMID 28388353 DOI: 10.1080/15384101.2017.1312225  0.449
2016 Piekna-Przybylska D, Bambara RA, Balakrishnan L. Acetylation regulates DNA repair mechanisms in human cells. Cell Cycle (Georgetown, Tex.). 0. PMID 27104361 DOI: 10.1080/15384101.2016.1176815  0.776
2014 Piekna-Przybylska D, Sullivan MA, Sharma G, Bambara RA. U3 region in the HIV-1 genome adopts a G-quadruplex structure in its RNA and DNA sequence. Biochemistry. 53: 2581-93. PMID 24735378 DOI: 10.1021/Bi4016692  0.4
2013 Amie SM, Bambara RA, Kim B. GTP is the primary activator of the anti-HIV restriction factor SAMHD1. The Journal of Biological Chemistry. 288: 25001-6. PMID 23880768 DOI: 10.1074/Jbc.C113.493619  0.789
2013 Piekna-Przybylska D, Sharma G, Bambara RA. Mechanism of HIV-1 RNA dimerization in the central region of the genome and significance for viral evolution. The Journal of Biological Chemistry. 288: 24140-50. PMID 23839990 DOI: 10.1074/Jbc.M113.477265  0.388
2013 Muchiri JM, Li D, Dykes C, Bambara RA. Efavirenz stimulates HIV-1 reverse transcriptase RNase H activity by a mechanism involving increased substrate binding and secondary cleavage activity. Biochemistry. 52: 4981-90. PMID 23806074 DOI: 10.1021/Bi400618Q  0.828
2013 Wang J, Li D, Bambara RA, Dykes C. Reverse transcriptase backbone can alter the polymerization and RNase activities of non-nucleoside reverse transcriptase mutants K101E+G190S. The Journal of General Virology. 94: 2297-308. PMID 23804564 DOI: 10.1099/Vir.0.054999-0  0.384
2013 Amie SM, Daly MB, Noble E, Schinazi RF, Bambara RA, Kim B. Anti-HIV host factor SAMHD1 regulates viral sensitivity to nucleoside reverse transcriptase inhibitors via modulation of cellular deoxyribonucleoside triphosphate (dNTP) levels. The Journal of Biological Chemistry. 288: 20683-91. PMID 23744077 DOI: 10.1074/Jbc.M113.472159  0.794
2013 Balakrishnan L, Bambara RA. Flap endonuclease 1. Annual Review of Biochemistry. 82: 119-38. PMID 23451868 DOI: 10.1146/Annurev-Biochem-072511-122603  0.819
2013 Balakrishnan L, Bambara RA. Okazaki fragment metabolism. Cold Spring Harbor Perspectives in Biology. 5. PMID 23378587 DOI: 10.1101/Cshperspect.A010173  0.818
2012 Kantartzis A, Williams GM, Balakrishnan L, Roberts RL, Surtees JA, Bambara RA. Msh2-Msh3 interferes with Okazaki fragment processing to promote trinucleotide repeat expansions. Cell Reports. 2: 216-22. PMID 22938864 DOI: 10.1016/J.Celrep.2012.06.020  0.839
2012 Gloor JW, Balakrishnan L, Campbell JL, Bambara RA. Biochemical analyses indicate that binding and cleavage specificities define the ordered processing of human Okazaki fragments by Dna2 and FEN1. Nucleic Acids Research. 40: 6774-86. PMID 22570407 DOI: 10.1093/Nar/Gks388  0.862
2012 Kennedy EM, Amie SM, Bambara RA, Kim B. Frequent incorporation of ribonucleotides during HIV-1 reverse transcription and their attenuated repair in macrophages. The Journal of Biological Chemistry. 287: 14280-8. PMID 22383524 DOI: 10.1074/Jbc.M112.348482  0.819
2012 Miller AS, Balakrishnan L, Buncher NA, Opresko PL, Bambara RA. Telomere proteins POT1, TRF1 and TRF2 augment long-patch base excision repair in vitro. Cell Cycle (Georgetown, Tex.). 11: 998-1007. PMID 22336916 DOI: 10.4161/Cc.11.5.19483  0.781
2012 Nguyen LA, Daddacha W, Rigby S, Bambara RA, Kim B. Altered strand transfer activity of a multiple-drug-resistant human immunodeficiency virus type 1 reverse transcriptase mutant with a dipeptide fingers domain insertion. Journal of Molecular Biology. 415: 248-62. PMID 22100453 DOI: 10.1016/J.Jmb.2011.11.014  0.808
2012 Song M, Bambara RA. Diversity and compartmentalization of persistent HIV-1 reservoirs under suppressive antiretroviral therapy Future Virology. 7: 135-137. DOI: 10.2217/Fvl.11.142  0.421
2011 Wang J, Zhang G, Bambara RA, Li D, Liang H, Wu H, Smith HM, Lowe NR, Demeter LM, Dykes C. Nonnucleoside reverse transcriptase inhibitor-resistant HIV is stimulated by efavirenz during early stages of infection. Journal of Virology. 85: 10861-73. PMID 21835788 DOI: 10.1128/Jvi.05116-11  0.358
2011 Balakrishnan L, Bambara RA. The changing view of Dna2. Cell Cycle (Georgetown, Tex.). 10: 2620-1. PMID 21829100 DOI: 10.4161/Cc.10.16.16545  0.768
2011 Muchiri JM, Rigby ST, Nguyen LA, Kim B, Bambara RA. HIV-1 reverse transcriptase dissociates during strand transfer. Journal of Molecular Biology. 412: 354-64. PMID 21821047 DOI: 10.1016/J.Jmb.2011.07.055  0.816
2011 Shen W, Gorelick RJ, Bambara RA. HIV-1 nucleocapsid protein increases strand transfer recombination by promoting dimeric G-quartet formation. The Journal of Biological Chemistry. 286: 29838-47. PMID 21737842 DOI: 10.1074/Jbc.M111.262352  0.532
2011 Gewandter JS, Bambara RA, O'Reilly MA. The RNA surveillance protein SMG1 activates p53 in response to DNA double-strand breaks but not exogenously oxidized mRNA. Cell Cycle (Georgetown, Tex.). 10: 2561-7. PMID 21701263 DOI: 10.4161/Cc.10.15.16347  0.476
2011 Fortini BK, Pokharel S, Polaczek P, Balakrishnan L, Bambara RA, Campbell JL. Characterization of the endonuclease and ATP-dependent flap endo/exonuclease of Dna2. The Journal of Biological Chemistry. 286: 23763-70. PMID 21572043 DOI: 10.1074/Jbc.M111.243071  0.82
2011 Piekna-Przybylska D, Bambara RA. Requirements for efficient minus strand strong-stop DNA transfer in human immunodeficiency virus 1. Rna Biology. 8: 230-6. PMID 21444998 DOI: 10.4161/Rna.8.2.14802  0.58
2011 Piekna-Przybylska D, Dykes C, Demeter LM, Bambara RA. Sequences in the U3 region of human immunodeficiency virus 1 improve efficiency of minus strand transfer in infected cells. Virology. 410: 368-74. PMID 21193211 DOI: 10.1016/J.Virol.2010.11.026  0.397
2011 Balakrishnan L, Bambara RA. Eukaryotic lagging strand DNA replication employs a multi-pathway mechanism that protects genome integrity. The Journal of Biological Chemistry. 286: 6865-70. PMID 21177245 DOI: 10.1074/Jbc.R110.209502  0.808
2010 Pike JE, Henry RA, Burgers PM, Campbell JL, Bambara RA. An alternative pathway for Okazaki fragment processing: resolution of fold-back flaps by Pif1 helicase. The Journal of Biological Chemistry. 285: 41712-23. PMID 20959454 DOI: 10.1074/Jbc.M110.146894  0.857
2010 Balakrishnan L, Polaczek P, Pokharel S, Campbell JL, Bambara RA. Dna2 exhibits a unique strand end-dependent helicase function. The Journal of Biological Chemistry. 285: 38861-8. PMID 20929864 DOI: 10.1074/Jbc.M110.165191  0.822
2010 Gloor JW, Balakrishnan L, Bambara RA. Flap endonuclease 1 mechanism analysis indicates flap base binding prior to threading. The Journal of Biological Chemistry. 285: 34922-31. PMID 20739288 DOI: 10.1074/Jbc.M110.165902  0.795
2010 Henry RA, Balakrishnan L, Ying-Lin ST, Campbell JL, Bambara RA. Components of the secondary pathway stimulate the primary pathway of eukaryotic Okazaki fragment processing. The Journal of Biological Chemistry. 285: 28496-505. PMID 20628185 DOI: 10.1074/Jbc.M110.131870  0.851
2010 Wang J, Bambara RA, Demeter LM, Dykes C. Reduced fitness in cell culture of HIV-1 with nonnucleoside reverse transcriptase inhibitor-resistant mutations correlates with relative levels of reverse transcriptase content and RNase H activity in virions. Journal of Virology. 84: 9377-89. PMID 20592075 DOI: 10.1128/Jvi.00618-10  0.346
2010 Balakrishnan L, Gloor JW, Bambara RA. Reconstitution of eukaryotic lagging strand DNA replication. Methods (San Diego, Calif.). 51: 347-57. PMID 20178844 DOI: 10.1016/J.Ymeth.2010.02.017  0.86
2010 Balakrishnan L, Stewart J, Polaczek P, Campbell JL, Bambara RA. Acetylation of Dna2 endonuclease/helicase and flap endonuclease 1 by p300 promotes DNA stability by creating long flap intermediates. The Journal of Biological Chemistry. 285: 4398-404. PMID 20019387 DOI: 10.1074/Jbc.M109.086397  0.868
2010 Piekna-Przybylska D, DiChiacchio L, Mathews DH, Bambara RA. A sequence similar to tRNA 3 Lys gene is embedded in HIV-1 U3-R and promotes minus-strand transfer. Nature Structural & Molecular Biology. 17: 83-9. PMID 19966801 DOI: 10.1038/Nsmb.1687  0.423
2010 Stewart JA, Campbell JL, Bambara RA. Dna2 is a structure-specific nuclease, with affinity for 5'-flap intermediates. Nucleic Acids Research. 38: 920-30. PMID 19934252 DOI: 10.1093/Nar/Gkp1055  0.827
2009 Rigby ST, Van Nostrand KP, Rose AE, Gorelick RJ, Mathews DH, Bambara RA. Factors that determine the efficiency of HIV-1 strand transfer initiated at a specific site. Journal of Molecular Biology. 394: 694-707. PMID 19853618 DOI: 10.1016/J.Jmb.2009.10.036  0.84
2009 Shen W, Gao L, Balakrishnan M, Bambara RA. A recombination hot spot in HIV-1 contains guanosine runs that can form a G-quartet structure and promote strand transfer in vitro. The Journal of Biological Chemistry. 284: 33883-93. PMID 19822521 DOI: 10.1074/Jbc.M109.055368  0.564
2009 Pike JE, Burgers PM, Campbell JL, Bambara RA. Pif1 helicase lengthens some Okazaki fragment flaps necessitating Dna2 nuclease/helicase action in the two-nuclease processing pathway. The Journal of Biological Chemistry. 284: 25170-80. PMID 19605347 DOI: 10.1074/Jbc.M109.023325  0.875
2009 Balakrishnan L, Brandt PD, Lindsey-Boltz LA, Sancar A, Bambara RA. Long patch base excision repair proceeds via coordinated stimulation of the multienzyme DNA repair complex. The Journal of Biological Chemistry. 284: 15158-72. PMID 19329425 DOI: 10.1074/Jbc.M109.000505  0.767
2009 Rigby ST, Rose AE, Hanson MN, Bambara RA. Mechanism analysis indicates that recombination events in HIV-1 initiate and complete over short distances, explaining why recombination frequencies are similar in different sections of the genome. Journal of Molecular Biology. 388: 30-47. PMID 19233203 DOI: 10.1016/J.Jmb.2009.02.029  0.834
2009 Song M, Balakrishnan M, Gorelick RJ, Bambara RA. A succession of mechanisms stimulate efficient reconstituted HIV-1 minus strand strong stop DNA transfer. Biochemistry. 48: 1810-9. PMID 19192967 DOI: 10.1021/Bi802149J  0.436
2009 Stewart JA, Campbell JL, Bambara RA. Significance of the dissociation of Dna2 by flap endonuclease 1 to Okazaki fragment processing in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 284: 8283-91. PMID 19179330 DOI: 10.1074/Jbc.M809189200  0.834
2008 Stewart JA, Miller AS, Campbell JL, Bambara RA. Dynamic removal of replication protein A by Dna2 facilitates primer cleavage during Okazaki fragment processing in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 283: 31356-65. PMID 18799459 DOI: 10.1074/Jbc.M805965200  0.835
2008 Rossi ML, Pike JE, Wang W, Burgers PM, Campbell JL, Bambara RA. Pif1 helicase directs eukaryotic Okazaki fragments toward the two-nuclease cleavage pathway for primer removal. The Journal of Biological Chemistry. 283: 27483-93. PMID 18689797 DOI: 10.1074/Jbc.M804550200  0.855
2008 Bartos JD, Willmott LJ, Binz SK, Wold MS, Bambara RA. Catalysis of strand annealing by replication protein A derives from its strand melting properties. The Journal of Biological Chemistry. 283: 21758-68. PMID 18522944 DOI: 10.1074/Jbc.M800856200  0.59
2008 Li X, Nott SL, Huang Y, Hilf R, Bambara RA, Qiu X, Yakovlev A, Welle S, Muyan M. Gene expression profiling reveals that the regulation of estrogen-responsive element-independent genes by 17 beta-estradiol-estrogen receptor beta is uncoupled from the induction of phenotypic changes in cell models. Journal of Molecular Endocrinology. 40: 211-29. PMID 18434428 DOI: 10.1677/Jme-07-0156  0.345
2008 Gehen SC, Staversky RJ, Bambara RA, Keng PC, O'Reilly MA. hSMG-1 and ATM sequentially and independently regulate the G1 checkpoint during oxidative stress. Oncogene. 27: 4065-74. PMID 18332866 DOI: 10.1038/Onc.2008.48  0.343
2008 Basu VP, Song M, Gao L, Rigby ST, Hanson MN, Bambara RA. Strand transfer events during HIV-1 reverse transcription. Virus Research. 134: 19-38. PMID 18279992 DOI: 10.1016/J.Virusres.2007.12.017  0.866
2008 Gao L, Hanson MN, Balakrishnan M, Boyer PL, Roques BP, Hughes SH, Kim B, Bambara RA. Apparent defects in processive DNA synthesis, strand transfer, and primer elongation of Met-184 mutants of HIV-1 reverse transcriptase derive solely from a dNTP utilization defect. The Journal of Biological Chemistry. 283: 9196-205. PMID 18218634 DOI: 10.1074/Jbc.M710148200  0.556
2008 Jamburuthugoda VK, Santos-Velazquez JM, Skasko M, Operario DJ, Purohit V, Chugh P, Szymanski EA, Wedekind JE, Bambara RA, Kim B. Reduced dNTP binding affinity of 3TC-resistant M184I HIV-1 reverse transcriptase variants responsible for viral infection failure in macrophage. The Journal of Biological Chemistry. 283: 9206-16. PMID 18218633 DOI: 10.1074/Jbc.M710149200  0.43
2008 Song M, Basu VP, Hanson MN, Roques BP, Bambara RA. Proximity and branch migration mechanisms in HIV-1 minus strand strong stop DNA transfer. The Journal of Biological Chemistry. 283: 3141-50. PMID 18073206 DOI: 10.1074/Jbc.M707343200  0.378
2007 Purohit V, Roques BP, Kim B, Bambara RA. Mechanisms that prevent template inactivation by HIV-1 reverse transcriptase RNase H cleavages. The Journal of Biological Chemistry. 282: 12598-609. PMID 17337733 DOI: 10.1074/Jbc.M700043200  0.514
2007 Gao L, Balakrishnan M, Roques BP, Bambara RA. Insights into the multiple roles of pausing in HIV-1 reverse transcriptase-promoted strand transfers. The Journal of Biological Chemistry. 282: 6222-31. PMID 17204480 DOI: 10.1074/Jbc.M610056200  0.461
2006 Stewart JA, Campbell JL, Bambara RA. Flap endonuclease disengages Dna2 helicase/nuclease from Okazaki fragment flaps. The Journal of Biological Chemistry. 281: 38565-72. PMID 17038322 DOI: 10.1074/Jbc.M606884200  0.836
2006 Hanson MN, Balakrishnan M, Roques BP, Bambara RA. Evidence that creation of invasion sites determines the rate of strand transfer mediated by HIV-1 reverse transcriptase. Journal of Molecular Biology. 363: 878-90. PMID 16997325 DOI: 10.1016/J.Jmb.2006.08.068  0.475
2006 Bartos JD, Wang W, Pike JE, Bambara RA. Mechanisms by which Bloom protein can disrupt recombination intermediates of Okazaki fragment maturation. The Journal of Biological Chemistry. 281: 32227-39. PMID 16950766 DOI: 10.1074/Jbc.M606310200  0.859
2006 Operario DJ, Balakrishnan M, Bambara RA, Kim B. Reduced dNTP interaction of human immunodeficiency virus type 1 reverse transcriptase promotes strand transfer. The Journal of Biological Chemistry. 281: 32113-21. PMID 16926150 DOI: 10.1074/Jbc.M604665200  0.486
2006 Rossi ML, Bambara RA. Reconstituted Okazaki fragment processing indicates two pathways of primer removal. The Journal of Biological Chemistry. 281: 26051-61. PMID 16837458 DOI: 10.1074/Jbc.M604805200  0.872
2006 Brandt PD, Helt CE, Keng PC, Bambara RA. The Rad9 protein enhances survival and promotes DNA repair following exposure to ionizing radiation. Biochemical and Biophysical Research Communications. 347: 232-7. PMID 16814252 DOI: 10.1016/J.Bbrc.2006.06.064  0.504
2006 Song M, Balakrishnan M, Chen Y, Roques BP, Bambara RA. Stimulation of HIV-1 minus strand strong stop DNA transfer by genomic sequences 3' of the primer binding site. The Journal of Biological Chemistry. 281: 24227-35. PMID 16782713 DOI: 10.1074/Jbc.M603097200  0.425
2006 Domaoal RA, Bambara RA, Demeter LM. HIV-1 reverse transcriptase mutants resistant to nonnucleoside reverse transcriptase inhibitors do not adversely affect DNA synthesis: pre-steady-state and steady-state kinetic studies. Journal of Acquired Immune Deficiency Syndromes (1999). 42: 405-11. PMID 16763521 DOI: 10.1097/01.Qai.0000222288.90201.33  0.415
2006 Wang W, Lindsey-Boltz LA, Sancar A, Bambara RA. Mechanism of stimulation of human DNA ligase I by the Rad9-rad1-Hus1 checkpoint complex. The Journal of Biological Chemistry. 281: 20865-72. PMID 16731526 DOI: 10.1074/Jbc.M602289200  0.572
2006 Wang J, Dykes C, Domaoal RA, Koval CE, Bambara RA, Demeter LM. The HIV-1 reverse transcriptase mutants G190S and G190A, which confer resistance to non-nucleoside reverse transcriptase inhibitors, demonstrate reductions in RNase H activity and DNA synthesis from tRNA(Lys, 3) that correlate with reductions in replication efficiency. Virology. 348: 462-74. PMID 16504235 DOI: 10.1016/J.Virol.2006.01.014  0.488
2006 Rossi ML, Purohit V, Brandt PD, Bambara RA. Lagging strand replication proteins in genome stability and DNA repair. Chemical Reviews. 106: 453-73. PMID 16464014 DOI: 10.1021/Cr040497L  0.834
2005 Purohit V, Balakrishnan M, Kim B, Bambara RA. Evidence that HIV-1 reverse transcriptase employs the DNA 3' end-directed primary/secondary RNase H cleavage mechanism during synthesis and strand transfer. The Journal of Biological Chemistry. 280: 40534-43. PMID 16221683 DOI: 10.1074/Jbc.M507839200  0.577
2005 Hanson MN, Balakrishnan M, Roques BP, Bambara RA. Effects of donor and acceptor RNA structures on the mechanism of strand transfer by HIV-1 reverse transcriptase. Journal of Molecular Biology. 353: 772-87. PMID 16216274 DOI: 10.1016/J.Jmb.2005.08.065  0.382
2005 Huang J, Li X, Maguire CA, Hilf R, Bambara RA, Muyan M. Binding of estrogen receptor beta to estrogen response element in situ is independent of estradiol and impaired by its amino terminus. Molecular Endocrinology (Baltimore, Md.). 19: 2696-712. PMID 15976006 DOI: 10.1210/Me.2005-0120  0.31
2005 Helt CE, Wang W, Keng PC, Bambara RA. Evidence that DNA damage detection machinery participates in DNA repair. Cell Cycle (Georgetown, Tex.). 4: 529-32. PMID 15876866 DOI: 10.4161/Cc.4.4.1598  0.542
2005 Chen Y, Balakrishnan M, Roques BP, Bambara RA. Acceptor RNA cleavage profile supports an invasion mechanism for HIV-1 minus strand transfer. The Journal of Biological Chemistry. 280: 14443-52. PMID 15657044 DOI: 10.1074/Jbc.M412190200  0.488
2005 Wang W, Bambara RA. Human Bloom protein stimulates flap endonuclease 1 activity by resolving DNA secondary structure. The Journal of Biological Chemistry. 280: 5391-9. PMID 15579905 DOI: 10.1074/Jbc.M412359200  0.497
2005 Helt CE, Cliby WA, Keng PC, Bambara RA, O'Reilly MA. Ataxia telangiectasia mutated (ATM) and ATM and Rad3-related protein exhibit selective target specificities in response to different forms of DNA damage. The Journal of Biological Chemistry. 280: 1186-92. PMID 15533933 DOI: 10.1074/Jbc.M410873200  0.407
2004 Renda MJ, Bradel-Tretheway B, Planelles V, Bambara RA, Dewhurst S. Inhibition of HIV type 1 replication using lentiviral-mediated delivery of mutant tRNA(Lys3)A58U. Aids Research and Human Retroviruses. 20: 1324-34. PMID 15650425 DOI: 10.1089/Aid.2004.20.1324  0.814
2004 Wang W, Brandt P, Rossi ML, Lindsey-Boltz L, Podust V, Fanning E, Sancar A, Bambara RA. The human Rad9-Rad1-Hus1 checkpoint complex stimulates flap endonuclease 1. Proceedings of the National Academy of Sciences of the United States of America. 101: 16762-7. PMID 15556996 DOI: 10.1073/Pnas.0407686101  0.843
2004 Diamond TL, Roshal M, Jamburuthugoda VK, Reynolds HM, Merriam AR, Lee KY, Balakrishnan M, Bambara RA, Planelles V, Dewhurst S, Kim B. Macrophage tropism of HIV-1 depends on efficient cellular dNTP utilization by reverse transcriptase. The Journal of Biological Chemistry. 279: 51545-53. PMID 15452123 DOI: 10.1074/Jbc.M408573200  0.366
2004 Kao HI, Campbell JL, Bambara RA. Dna2p helicase/nuclease is a tracking protein, like FEN1, for flap cleavage during Okazaki fragment maturation. The Journal of Biological Chemistry. 279: 50840-9. PMID 15448135 DOI: 10.1074/Jbc.M409231200  0.84
2004 Li X, Huang J, Yi P, Bambara RA, Hilf R, Muyan M. Single-chain estrogen receptors (ERs) reveal that the ERalpha/beta heterodimer emulates functions of the ERalpha dimer in genomic estrogen signaling pathways. Molecular and Cellular Biology. 24: 7681-94. PMID 15314175 DOI: 10.1128/Mcb.24.17.7681-7694.2004  0.5
2004 Dykes C, Balakrishnan M, Planelles V, Zhu Y, Bambara RA, Demeter LM. Identification of a preferred region for recombination and mutation in HIV-1 gag. Virology. 326: 262-79. PMID 15302212 DOI: 10.1016/J.Virol.2004.02.033  0.373
2004 Liu Y, Kao HI, Bambara RA. Flap endonuclease 1: a central component of DNA metabolism. Annual Review of Biochemistry. 73: 589-615. PMID 15189154 DOI: 10.1146/Annurev.Biochem.73.012803.092453  0.845
2004 Huang J, Li X, Yi P, Hilf R, Bambara RA, Muyan M. Targeting estrogen responsive elements (EREs): design of potent transactivators for ERE-containing genes. Molecular and Cellular Endocrinology. 218: 65-78. PMID 15130512 DOI: 10.1016/J.Mce.2003.12.005  0.53
2004 Liu Y, Zhang H, Veeraraghavan J, Bambara RA, Freudenreich CH. Saccharomyces cerevisiae flap endonuclease 1 uses flap equilibration to maintain triplet repeat stability. Molecular and Cellular Biology. 24: 4049-64. PMID 15082797 DOI: 10.1128/Mcb.24.9.4049-4064.2004  0.422
2004 Weiss KK, Chen R, Skasko M, Reynolds HM, Lee K, Bambara RA, Mansky LM, Kim B. A role for dNTP binding of human immunodeficiency virus type 1 reverse transcriptase in viral mutagenesis. Biochemistry. 43: 4490-500. PMID 15078095 DOI: 10.1021/Bi035258R  0.387
2004 Kao HI, Veeraraghavan J, Polaczek P, Campbell JL, Bambara RA. On the roles of Saccharomyces cerevisiae Dna2p and Flap endonuclease 1 in Okazaki fragment processing. The Journal of Biological Chemistry. 279: 15014-24. PMID 14747468 DOI: 10.1074/Jbc.M313216200  0.862
2004 Sharma S, Otterlei M, Sommers JA, Driscoll HC, Dianov GL, Kao HI, Bambara RA, Brosh RM. WRN helicase and FEN-1 form a complex upon replication arrest and together process branchmigrating DNA structures associated with the replication fork. Molecular Biology of the Cell. 15: 734-50. PMID 14657243 DOI: 10.1091/Mbc.E03-08-0567  0.836
2004 Helt CE, Staversky RJ, Lee YJ, Bambara RA, Keng PC, O'Reilly MA. The Cdk and PCNA domains on p21Cip1 both function to inhibit G1/S progression during hyperoxia. American Journal of Physiology. Lung Cellular and Molecular Physiology. 286: L506-13. PMID 12936910 DOI: 10.1152/Ajplung.00243.2003  0.305
2003 Kao HI, Bambara RA. The protein components and mechanism of eukaryotic Okazaki fragment maturation. Critical Reviews in Biochemistry and Molecular Biology. 38: 433-52. PMID 14693726 DOI: 10.1080/10409230390259382  0.853
2003 Veeraraghavan J, Rossi ML, Bambara RA. Analysis of DNA replication intermediates suggests mechanisms of repeat sequence expansion. The Journal of Biological Chemistry. 278: 42854-66. PMID 12902352 DOI: 10.1074/Jbc.M305137200  0.814
2003 Chen Y, Balakrishnan M, Roques BP, Bambara RA. Steps of the acceptor invasion mechanism for HIV-1 minus strand strong stop transfer. The Journal of Biological Chemistry. 278: 38368-75. PMID 12878597 DOI: 10.1074/Jbc.M305700200  0.452
2003 Roda RH, Balakrishnan M, Hanson MN, Wohrl BM, Le Grice SF, Roques BP, Gorelick RJ, Bambara RA. Role of the Reverse Transcriptase, Nucleocapsid Protein, and Template Structure in the Two-step Transfer Mechanism in Retroviral Recombination. The Journal of Biological Chemistry. 278: 31536-46. PMID 12801926 DOI: 10.1074/Jbc.M304608200  0.466
2003 Diamond TL, Souroullas G, Weiss KK, Lee KY, Bambara RA, Dewhurst S, Kim B. Mechanistic understanding of an altered fidelity simian immunodeficiency virus reverse transcriptase mutation, V148I, identified in a pig-tailed macaque Journal of Biological Chemistry. 278: 29913-29924. PMID 12740369 DOI: 10.1074/Jbc.M211754200  0.322
2003 Balakrishnan M, Roques BP, Fay PJ, Bambara RA. Template dimerization promotes an acceptor invasion-induced transfer mechanism during human immunodeficiency virus type 1 minus-strand synthesis. Journal of Virology. 77: 4710-21. PMID 12663778 DOI: 10.1128/Jvi.77.8.4710-4721.2003  0.656
2003 Liu Y, Bambara RA. Analysis of human flap endonuclease 1 mutants reveals a mechanism to prevent triplet repeat expansion. The Journal of Biological Chemistry. 278: 13728-39. PMID 12554738 DOI: 10.1074/Jbc.M212061200  0.525
2003 Chen Y, Balakrishnan M, Roques BP, Fay PJ, Bambara RA. Mechanism of minus strand strong stop transfer in HIV-1 reverse transcription. The Journal of Biological Chemistry. 278: 8006-17. PMID 12499370 DOI: 10.1074/Jbc.M210959200  0.652
2002 Huggins CF, Chafin DR, Aoyagi S, Henricksen LA, Bambara RA, Hayes JJ. Flap endonuclease 1 efficiently cleaves base excision repair and DNA replication intermediates assembled into nucleosomes. Molecular Cell. 10: 1201-11. PMID 12453426 DOI: 10.1016/S1097-2765(02)00736-0  0.581
2002 Roda RH, Balakrishnan M, Kim JK, Roques BP, Fay PJ, Bambara RA. Strand transfer occurs in retroviruses by a pause-initiated two-step mechanism. The Journal of Biological Chemistry. 277: 46900-11. PMID 12370183 DOI: 10.1074/Jbc.M208638200  0.678
2002 Ranalli TA, Tom S, Bambara RA. AP endonuclease 1 coordinates flap endonuclease 1 and DNA ligase I activity in long patch base excision repair. The Journal of Biological Chemistry. 277: 41715-24. PMID 12200445 DOI: 10.1074/Jbc.M207207200  0.847
2002 Yi P, Bhagat S, Hilf R, Bambara RA, Muyan M. Differences in the abilities of estrogen receptors to integrate activation functions are critical for subtype-specific transcriptional responses. Molecular Endocrinology (Baltimore, Md.). 16: 1810-27. PMID 12145336 DOI: 10.1210/Me.2001-0323  0.501
2002 Sathya G, Yi P, Bhagat S, Bambara RA, Hilf R, Muyan M. Structural regions of ERalpha critical for synergistic transcriptional responses contain co-factor interacting surfaces. Molecular and Cellular Endocrinology. 192: 171-85. PMID 12088878 DOI: 10.1016/S0303-7207(01)00673-6  0.778
2002 Wisniewski M, Chen Y, Balakrishnan M, Palaniappan C, Roques BP, Fay PJ, Bambara RA. Substrate requirements for secondary cleavage by HIV-1 reverse transcriptase RNase H. The Journal of Biological Chemistry. 277: 28400-10. PMID 12023278 DOI: 10.1074/Jbc.M201645200  0.849
2002 Henricksen LA, Veeraraghavan J, Chafin DR, Bambara RA. DNA ligase I competes with FEN1 to expand repetitive DNA sequences in vitro. The Journal of Biological Chemistry. 277: 22361-9. PMID 11948189 DOI: 10.1074/Jbc.M201765200  0.535
2002 Weiss KK, Bambara RA, Kim B. Mechanistic role of residue Gln151 in error prone DNA synthesis by human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT). Pre-steady state kinetic study of the Q151N HIV-1 RT mutant with increased fidelity. The Journal of Biological Chemistry. 277: 22662-9. PMID 11927582 DOI: 10.1074/Jbc.M200202200  0.43
2002 Yi P, Driscoll MD, Huang J, Bhagat S, Hilf R, Bambara RA, Muyan M. The effects of estrogen-responsive element- and ligand-induced structural changes on the recruitment of cofactors and transcriptional responses by ER alpha and ER beta. Molecular Endocrinology (Baltimore, Md.). 16: 674-93. PMID 11923465 DOI: 10.1210/Mend.16.4.0810  0.515
2002 Kao HI, Henricksen LA, Liu Y, Bambara RA. Cleavage specificity of Saccharomyces cerevisiae flap endonuclease 1 suggests a double-flap structure as the cellular substrate. The Journal of Biological Chemistry. 277: 14379-89. PMID 11825897 DOI: 10.1074/Jbc.M110662200  0.849
2002 Ranalli TA, DeMott MS, Bambara RA. Mechanism underlying replication protein a stimulation of DNA ligase I. The Journal of Biological Chemistry. 277: 1719-27. PMID 11698410 DOI: 10.1074/Jbc.M109053200  0.847
2001 Tom S, Ranalli TA, Podust VN, Bambara RA. Regulatory roles of p21 and apurinic/apyrimidinic endonuclease 1 in base excision repair. The Journal of Biological Chemistry. 276: 48781-9. PMID 11641413 DOI: 10.1074/Jbc.M109626200  0.846
2001 Renda MJ, Rosenblatt JD, Klimatcheva E, Demeter LM, Bambara RA, Planelles V. Mutation of the methylated tRNA(Lys)(3) residue A58 disrupts reverse transcription and inhibits replication of human immunodeficiency virus type 1. Journal of Virology. 75: 9671-8. PMID 11559799 DOI: 10.1128/Jvi.75.20.9671-9678.2001  0.809
2001 Muyan M, Yi P, Sathya G, Willmert LJ, Driscoll MD, Hilf R, Bambara RA. Fusion estrogen receptor proteins: toward the development of receptor-based agonists and antagonists. Molecular and Cellular Endocrinology. 182: 249-63. PMID 11514059 DOI: 10.1016/S0303-7207(01)00493-2  0.773
2001 Xie Y, Liu Y, Argueso JL, Henricksen LA, Kao HI, Bambara RA, Alani E. Identification of rad27 mutations that confer differential defects in mutation avoidance, repeat tract instability, and flap cleavage. Molecular and Cellular Biology. 21: 4889-99. PMID 11438646 DOI: 10.1128/Mcb.21.15.4889-4899.2001  0.836
2001 Balakrishnan M, Fay PJ, Bambara RA. The kissing hairpin sequence promotes recombination within the HIV-I 5' leader region. The Journal of Biological Chemistry. 276: 36482-92. PMID 11432862 DOI: 10.1074/Jbc.M102860200  0.678
2001 Tom S, Henricksen LA, Park MS, Bambara RA. DNA ligase I and proliferating cell nuclear antigen form a functional complex. The Journal of Biological Chemistry. 276: 24817-25. PMID 11331287 DOI: 10.1074/Jbc.M101673200  0.864
2001 Archer RH, Wisniewski M, Bambara RA, Demeter LM. The Y181C mutant of HIV-1 reverse transcriptase resistant to nonnucleoside reverse transcriptase inhibitors alters the size distribution of RNase H cleavages. Biochemistry. 40: 4087-95. PMID 11300789 DOI: 10.1021/Bi002328A  0.782
2000 Wisniewski M, Balakrishnan M, Palaniappan C, Fay PJ, Bambara RA. Unique progressive cleavage mechanism of HIV reverse transcriptase RNase H. Proceedings of the National Academy of Sciences of the United States of America. 97: 11978-83. PMID 11035788 DOI: 10.1073/Pnas.210392297  0.827
2000 Chafin DR, Vitolo JM, Henricksen LA, Bambara RA, Hayes JJ. Human DNA ligase I efficiently seals nicks in nucleosomes. The Embo Journal. 19: 5492-501. PMID 11032816 DOI: 10.1093/Emboj/19.20.5492  0.557
2000 Wisniewski M, Balakrishnan M, Palaniappan C, Fay PJ, Bambara RA. The sequential mechanism of HIV reverse transcriptase RNase H. The Journal of Biological Chemistry. 275: 37664-71. PMID 10956669 DOI: 10.1074/Jbc.M007381200  0.832
2000 Archer RH, Dykes C, Gerondelis P, Lloyd A, Fay P, Reichman RC, Bambara RA, Demeter LM. Mutants of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase resistant to nonnucleoside reverse transcriptase inhibitors demonstrate altered rates of RNase H cleavage that correlate with HIV-1 replication fitness in cell culture. Journal of Virology. 74: 8390-401. PMID 10954539 DOI: 10.1128/Jvi.74.18.8390-8401.2000  0.677
2000 Bambara R, Jay E, Wu R. DNA sequence analysis: a formula to predict electrophoretic mobilities of oligonucleotides on cellulose acetate. Nucleic Acids Research. 1: 1503-20. PMID 10793706 DOI: 10.1093/Nar/1.11.1503  0.511
2000 Jay E, Bambara R, Padmanabhan R, Wu R. DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping. Nucleic Acids Research. 1: 331-53. PMID 10793670 DOI: 10.1093/Nar/1.3.331  0.575
2000 Henricksen LA, Tom S, Liu Y, Bambara RA. Inhibition of flap endonuclease 1 by flap secondary structure and relevance to repeat sequence expansion. The Journal of Biological Chemistry. 275: 16420-7. PMID 10748145 DOI: 10.1074/Jbc.M909635199  0.828
2000 Tom S, Henricksen LA, Bambara RA. Mechanism whereby proliferating cell nuclear antigen stimulates flap endonuclease 1. The Journal of Biological Chemistry. 275: 10498-505. PMID 10744741 DOI: 10.1074/Jbc.275.14.10498  0.832
1999 Bornarth CJ, Ranalli TA, Henricksen LA, Wahl AF, Bambara RA. Effect of flap modifications on human FEN1 cleavage. Biochemistry. 38: 13347-54. PMID 10529210 DOI: 10.1021/Bi991321U  0.812
1999 Wisniewski M, Palaniappan C, Fu Z, Le Grice SF, Fay P, Bambara RA. Mutations in the primer grip region of HIV reverse transcriptase can increase replication fidelity. The Journal of Biological Chemistry. 274: 28175-84. PMID 10497170 DOI: 10.1074/Jbc.274.40.28175  0.793
1999 Driscoll MD, Sathya G, Saidi LF, DeMott MS, Hilf R, Bambara RA. An explanation for observed estrogen receptor binding to single-stranded estrogen-responsive element DNA. Molecular Endocrinology (Baltimore, Md.). 13: 958-68. PMID 10379894 DOI: 10.1210/Mend.13.6.0296  0.823
1999 Gerondelis P, Archer RH, Palaniappan C, Reichman RC, Fay PJ, Bambara RA, Demeter LM. The P236L delavirdine-resistant human immunodeficiency virus type 1 mutant is replication defective and demonstrates alterations in both RNA 5'-end- and DNA 3'-end-directed RNase H activities. Journal of Virology. 73: 5803-13. PMID 10364332 DOI: 10.1128/Jvi.73.7.5803-5813.1999  0.694
1999 Rumbaugh JA, Henricksen LA, DeMott MS, Bambara RA. Cleavage of substrates with mismatched nucleotides by Flap endonuclease-1. Implications for mammalian Okazaki fragment processing. The Journal of Biological Chemistry. 274: 14602-8. PMID 10329652 DOI: 10.1074/Jbc.274.21.14602  0.603
1999 Klinge CM, Studinski-Jones AL, Kulakosky PC, Bambara RA, Hilf R. Comparison of tamoxifen ligands on estrogen receptor interaction with estrogen response elements. Molecular and Cellular Endocrinology. 143: 79-90. PMID 9806352 DOI: 10.1016/S0303-7207(98)00130-0  0.328
1998 Driscoll MD, Sathya G, Muyan M, Klinge CM, Hilf R, Bambara RA. Sequence requirements for estrogen receptor binding to estrogen response elements. The Journal of Biological Chemistry. 273: 29321-30. PMID 9792632 DOI: 10.1074/Jbc.273.45.29321  0.786
1998 Rumbaugh JA, Fuentes GM, Bambara RA. Processing of an HIV replication intermediate by the human DNA replication enzyme FEN1 Journal of Biological Chemistry. 273: 28740-28745. PMID 9786870 DOI: 10.1074/Jbc.273.44.28740  0.509
1998 DeMott MS, Zigman S, Bambara RA. Replication protein A stimulates long patch DNA base excision repair. The Journal of Biological Chemistry. 273: 27492-8. PMID 9765279 DOI: 10.1074/Jbc.273.42.27492  0.567
1998 Henricksen LA, Bambara RA. Multiprotein reactions in mammalian DNA replication. Leukemia Research. 22: 1-5. PMID 9585072 DOI: 10.1016/S0145-2126(97)00113-6  0.504
1998 Murante RS, Henricksen LA, Bambara RA. Junction ribonuclease: an activity in Okazaki fragment processing. Proceedings of the National Academy of Sciences of the United States of America. 95: 2244-9. PMID 9482870 DOI: 10.1073/Pnas.95.5.2244  0.545
1998 Palaniappan C, Kim JK, Wisniewski M, Fay PJ, Bambara RA. Control of initiation of viral plus strand DNA synthesis by HIV reverse transcriptase. The Journal of Biological Chemistry. 273: 3808-16. PMID 9461561 DOI: 10.1074/Jbc.273.7.3808  0.856
1997 Klinge CM, Brolly CL, Bambara RA, Hilf R. hsp70 is not required for high affinity binding of purified calf uterine estrogen receptor to estrogen response element DNA in vitro. The Journal of Steroid Biochemistry and Molecular Biology. 63: 283-301. PMID 9459195 DOI: 10.1016/S0960-0760(97)00091-5  0.301
1997 Sathya G, Li W, Klinge CM, Anolik JH, Hilf R, Bambara RA. Effects of multiple estrogen responsive elements, their spacing, and location on estrogen response of reporter genes. Molecular Endocrinology (Baltimore, Md.). 11: 1994-2003. PMID 9415403 DOI: 10.1210/Mend.11.13.0039  0.789
1997 Klinge CM, Silver BF, Driscoll MD, Sathya G, Bambara RA, Hilf R. Chicken ovalbumin upstream promoter-transcription factor interacts with estrogen receptor, binds to estrogen response elements and half-sites, and inhibits estrogen-induced gene expression. The Journal of Biological Chemistry. 272: 31465-74. PMID 9395481 DOI: 10.1074/Jbc.272.50.31465  0.793
1997 Rumbaugh JA, Murante RS, Shi S, Bambara RA. Creation and removal of embedded ribonucleotides in chromosomal DNA during mammalian Okazaki fragment processing. The Journal of Biological Chemistry. 272: 22591-9. PMID 9278414 DOI: 10.1074/Jbc.272.36.22591  0.599
1997 Kim JK, Palaniappan C, Wu W, Fay PJ, Bambara RA. Evidence for a unique mechanism of strand transfer from the transactivation response region of HIV-1. The Journal of Biological Chemistry. 272: 16769-77. PMID 9201981 DOI: 10.1074/Jbc.272.27.16769  0.651
1997 Lu Y, Planelles V, Li X, Palaniappan C, Day B, Challita-Eid P, Amado R, Stephens D, Kohn DB, Bakker A, Fay P, Bambara RA, Rosenblatt JD. Inhibition of HIV-1 replication using a mutated tRNALys-3 primer. The Journal of Biological Chemistry. 272: 14523-31. PMID 9169409 DOI: 10.1074/Jbc.272.23.14523  0.625
1997 Palaniappan C, Wisniewski M, Jacques PS, Le Grice SF, Fay PJ, Bambara RA. Mutations within the primer grip region of HIV-1 reverse transcriptase result in loss of RNase H function. The Journal of Biological Chemistry. 272: 11157-64. PMID 9111014 DOI: 10.1074/Jbc.272.17.11157  0.835
1997 Bambara RA, Murante RS, Henricksen LA. Enzymes and reactions at the eukaryotic DNA replication fork. The Journal of Biological Chemistry. 272: 4647-50. PMID 9081985 DOI: 10.1074/Jbc.272.8.4647  0.492
1997 DeMott MS, Shen B, Park MS, Bambara RA, Zigman S. Human RAD2 homolog 1 5'- to 3'-exo/endonuclease can efficiently excise a displaced DNA fragment containing a 5'-terminal abasic lesion by endonuclease activity. The Journal of Biological Chemistry. 271: 30068-76. PMID 8939954 DOI: 10.1074/Jbc.271.47.30068  0.557
1996 Anolik JH, Klinge CM, Brolly CL, Bambara RA, Hilf R. Stability of the ligand-estrogen receptor interaction depends on estrogen response element flanking sequences and cellular factors. The Journal of Steroid Biochemistry and Molecular Biology. 59: 413-29. PMID 9010347 DOI: 10.1016/S0960-0760(96)00129-X  0.36
1996 Barnes CJ, Wahl AF, Shen B, Park MS, Bambara RA. Mechanism of tracking and cleavage of adduct-damaged DNA substrates by the mammalian 5'- to 3'-exonuclease/endonuclease RAD2 homologue 1 or flap endonuclease 1 Journal of Biological Chemistry. 271: 29624-29631. PMID 8939893 DOI: 10.1074/Jbc.271.47.29624  0.563
1996 Fuentes GM, Palaniappan C, Fay PJ, Bambara RA. Strand displacement synthesis in the central polypurine tract region of HIV-1 promotes DNA to DNA strand transfer recombination. The Journal of Biological Chemistry. 271: 29605-11. PMID 8939890 DOI: 10.1074/Jbc.271.47.29605  0.747
1996 Murante RS, Rumbaugh JA, Barnes CJ, Norton JR, Bambara RA. Calf RTH-1 nuclease can remove the initiator RNAs of Okazaki fragments by endonuclease activity. The Journal of Biological Chemistry. 271: 25888-97. PMID 8824221 DOI: 10.1074/Jbc.271.42.25888  0.475
1996 Palaniappan C, Wisniewski M, Wu W, Fay PJ, Bambara RA. Misincorporation by HIV-1 reverse transcriptase promotes recombination via strand transfer synthesis. The Journal of Biological Chemistry. 271: 22331-8. PMID 8798393 DOI: 10.1074/Jbc.271.37.22331  0.849
1996 Klinge CM, Traish AM, Driscoll MD, Hilf R, Bambara RA. Site-directed estrogen receptor antibodies stabilize 4-hydroxytamoxifen ligand, but not estradiol, and indicate ligand-specific differences in the recognition of estrogen response element DNA in vitro. Steroids. 61: 278-89. PMID 8738832 DOI: 10.1016/0039-128X(95)00219-G  0.322
1996 Huang L, Rumbaugh JA, Murante RS, Lin RJ, Rust L, Bambara RA. Role of calf RTH-1 nuclease in removal of 5'-ribonucleotides during Okazaki fragment processing. Biochemistry. 35: 9266-77. PMID 8703932 DOI: 10.1021/Bi9603074  0.581
1996 Fuentes GM, Fay PJ, Bambara RA. Relationship between plus strand DNA synthesis removal of downstream segments of RNA by human immunodeficiency virus, murine leukemia virus and avian myeloblastoma virus reverse transcriptases. Nucleic Acids Research. 24: 1719-26. PMID 8649991 DOI: 10.1093/Nar/24.9.1719  0.736
1996 Wu W, Palaniappan C, Bambara RA, Fay PJ. Differences in mutagenesis during minus strand, plus strand and strand transfer (recombination) synthesis of the HIV-1 gene in vitro. Nucleic Acids Research. 24: 1710-8. PMID 8649990 DOI: 10.1093/Nar/24.9.1710  0.689
1996 Klinge CM, Traish AM, Bambara RA, Hilf R. Dissociation of 4-hydroxytamoxifen, but not estradiol or tamoxifen aziridine, from the estrogen receptor as the receptor binds estrogen response element DNA Journal of Steroid Biochemistry and Molecular Biology. 57: 51-66. PMID 8645617 DOI: 10.1016/0960-0760(95)00246-4  0.328
1996 Fuentes GM, Rodríguez-Rodríguez L, Palaniappan C, Fay PJ, Bambara RA. Strand displacement synthesis of the long terminal repeats by HIV reverse transcriptase. The Journal of Biological Chemistry. 271: 1966-71. PMID 8567645 DOI: 10.1074/Jbc.271.4.1966  0.742
1996 Murante RS, Rust L, Bambara RA. Calf 5' to 3' exo/endonuclease must slide from a 5' end of the substrate to perform structure-specific cleavage. The Journal of Biological Chemistry. 270: 30377-83. PMID 8530463 DOI: 10.1074/Jbc.270.51.30377  0.6
1996 Palaniappan C, Fuentes GM, Rodríguez-Rodríguez L, Fay PJ, Bambara RA. Helix Structure and Ends of RNA/DNA Hybrids Direct the Cleavage Specificity of HIV-1 Reverse Transcriptase RNase H Journal of Biological Chemistry. 271: 2063-2070. DOI: 10.1074/Jbc.271.4.2063  0.719
1995 Bambara RA, Fay PJ, Mallaber LM. Methods of analyzing processivity. Methods in Enzymology. 262: 270-80. PMID 8594353 DOI: 10.1016/0076-6879(95)62023-0  0.644
1995 Anolik JH, Klinge CM, Hilf R, Bambara RA. Cooperative binding of estrogen receptor to DNA depends on spacing of binding sites, flanking sequence, and ligand. Biochemistry. 34: 2511-20. PMID 7873531 DOI: 10.1021/Bi00008A015  0.324
1995 Bambara RA, Huang L. Reconstitution of mammalian DNA replication. Progress in Nucleic Acid Research and Molecular Biology. 51: 93-122. PMID 7659780 DOI: 10.1016/S0079-6603(08)60877-6  0.529
1995 Rodríguez-Rodríguez L, Tsuchihashi Z, Fuentes GM, Bambara RA, Fay PJ. Influence of human immunodeficiency virus nucleocapsid protein on synthesis and strand transfer by the reverse transcriptase in vitro. The Journal of Biological Chemistry. 270: 15005-11. PMID 7541033 DOI: 10.1074/Jbc.270.25.15005  0.652
1995 Palaniappan C, Fay PJ, Bambara RA. Nevirapine alters the cleavage specificity of ribonuclease H of human immunodeficiency virus 1 reverse transcriptase. The Journal of Biological Chemistry. 270: 4861-9. PMID 7533167 DOI: 10.1074/Jbc.270.9.4861  0.734
1995 Wu W, Blumberg BM, Fay PJ, Bambara RA. Strand transfer mediated by human immunodeficiency virus reverse transcriptase in vitro is promoted by pausing and results in misincorporation. The Journal of Biological Chemistry. 270: 325-32. PMID 7529228 DOI: 10.1074/Jbc.270.1.325  0.694
1995 Fuentes GM, Rodríguez-Rodríguez L, Fay PJ, Bambara RA. Use of an oligoribonucleotide containing the polypurine tract sequence as a primer by HIV reverse transcriptase. The Journal of Biological Chemistry. 270: 28169-76. PMID 7499308 DOI: 10.1074/Jbc.270.47.28169  0.734
1994 Anolik JH, Klinge CM, Bambara RA, Hilf R. Differential impact of flanking sequences on estradiol- vs 4-hydroxytamoxifen-liganded estrogen receptor binding to estrogen responsive element DNA. The Journal of Steroid Biochemistry and Molecular Biology. 46: 713-30. PMID 8274405 DOI: 10.1016/0960-0760(93)90312-K  0.303
1994 Turchi JJ, Huang L, Murante RS, Kim Y, Bambara RA. Enzymatic completion of mammalian lagging-strand DNA replication. Proceedings of the National Academy of Sciences of the United States of America. 91: 9803-7. PMID 7524089 DOI: 10.1073/Pnas.91.21.9803  0.74
1994 Destefano JJ, Mallaber LM, Fay PJ, Bambara RA. Quantitative analysis of RNA cleavage during rnadirected DNA synthesis by human immunodeficiency and avian myeloblastosis virus reverse transcriptases Nucleic Acids Research. 22: 3793-3800. PMID 7524028 DOI: 10.1093/Nar/22.18.3793  0.69
1994 DeStefano JJ, Wu W, Seehra J, McCoy J, Laston D, Albone E, Fay PJ, Bambara RA. Characterization of an RNase H deficient mutant of human immunodeficiency virus-1 reverse transcriptase having an aspartate to asparagine change at position 498 Bba - Gene Structure and Expression. 1219: 380-388. PMID 7522572 DOI: 10.1016/0167-4781(94)90062-0  0.622
1993 Huang L, Turchi JJ, Wahl AF, Bambara RA. Effects of the anticancer drug cis-diamminedichloroplatinum(II) on the activities of calf thymus DNA polymerase epsilon. Biochemistry. 32: 841-8. PMID 8380711 DOI: 10.1021/Bi00054A015  0.745
1993 Buiser RG, Bambara RA, Fay PJ. Pausing by retroviral DNA polymerases promotes strand transfer from internal regions of RNA donor templates to homopolymeric acceptor templates. Biochimica Et Biophysica Acta. 1216: 20-30. PMID 7692974 DOI: 10.1016/0167-4781(93)90033-A  0.69
1993 Destefano JJ, Mallaber LM, Fay PJ, Bambara RA. Determinants of the RNAse H cleavage specificity of human immunodeficiency virus reverse transcriptase Nucleic Acids Research. 21: 4330-4338. PMID 7692401 DOI: 10.1093/Nar/21.18.4330  0.712
1993 DeStefano JJ, Bambara RA, Fay PJ. Parameters that influence the binding of human immunodeficiency virus reverse transcriptase to nucleic acid structures Biochemistry. 32: 6908-6915. PMID 7687463 DOI: 10.1021/Bi00078A014  0.734
1992 Thomas DC, Roberts JD, Sabatino RD, Myers TW, Tan CK, Downey KM, So AG, Bambara RA, Kunkel TA. Fidelity of mammalian DNA replication and replicative DNA polymerases. Biochemistry. 30: 11751-9. PMID 1751492 DOI: 10.1021/Bi00115A003  0.564
1992 Klinge CM, Bambara RA, Hilf R. Antiestrogen-liganded estrogen receptor interaction with estrogen responsive element DNA in vitro. The Journal of Steroid Biochemistry and Molecular Biology. 43: 249-62. PMID 1390277 DOI: 10.1016/0960-0760(92)90159-G  0.342
1992 Destefano JJ, Mallaber LM, Rodriguez-Rodriguez L, Fay PJ, Bambara RA. Requirements for strand transfer between internal regions of heteropolymer templates by human immunodeficiency virus reverse transcriptase Journal of Virology. 66: 6370-6378. PMID 1383563 DOI: 10.1128/Jvi.66.11.6370-6378.1992  0.7
1992 DeStefano JJ, Buiser RG, Mallaber LM, Fay PJ, Bambara RA. Parameters that influence processive synthesis and site-specific termination by human immunodeficiency virus reverse transcriptase on RNA and DNA templates Bba - Gene Structure and Expression. 1131: 270-280. PMID 1378301 DOI: 10.1016/0167-4781(92)90025-U  0.712
1992 Turchi JJ, Murante RS, Bambara RA. DNA substrate specificity of DNA helicase E from calf thymus. Nucleic Acids Research. 20: 6075-80. PMID 1334262 DOI: 10.1093/Nar/20.22.6075  0.749
1992 Siegal G, Turchi JJ, Myers TW, Bambara RA. A 5' to 3' exonuclease functionally interacts with calf DNA polymerase epsilon. Proceedings of the National Academy of Sciences of the United States of America. 89: 9377-81. PMID 1329095 DOI: 10.1073/Pnas.89.20.9377  0.744
1992 Turchi JJ, Siegal G, Bambara RA. DNA helicase E and DNA polymerase epsilon functionally interact for displacement synthesis. Biochemistry. 31: 9008-15. PMID 1327108 DOI: 10.1021/Bi00152A043  0.746
1991 Ludwig LB, Klinge CM, Peale FV, Bambara RA, Zain S, Hilf R. A microtiter well assay for quantitative measurement of estrogen receptor binding to estrogen-responsive elements. Molecular Endocrinology (Baltimore, Md.). 4: 1027-33. PMID 2284005 DOI: 10.1210/Mend-4-7-1027  0.489
1991 Ishibe Y, Klinge CM, Hilf R, Bambara RA. Estrogen receptor alters the topology of plasmid DNA containing estrogen responsive elements. Biochemical and Biophysical Research Communications. 176: 486-91. PMID 1850269 DOI: 10.1016/0006-291X(91)90950-C  0.483
1991 Bambara RA, Jessee CB. Properties of DNA polymerases delta and epsilon, and their roles in eukaryotic DNA replication. Biochimica Et Biophysica Acta. 1088: 11-24. PMID 1846563 DOI: 10.1016/0167-4781(91)90147-E  0.468
1990 Peale FV, Ishibe Y, Klinge CM, Zain S, Hilf R, Bambara RA. Rapid purification of the estrogen receptor by sequence-specific DNA affinity chromatography. Biochemistry. 28: 8671-5. PMID 2605215 DOI: 10.1021/Bi00448A001  0.435
1990 Burgers PM, Bambara RA, Campbell JL, Chang LM, Downey KM, Hübscher U, Lee MY, Linn SM, So AG, Spadari S. Revised nomenclature for eukaryotic DNA polymerases. European Journal of Biochemistry / Febs. 191: 617-8. PMID 2390988 DOI: 10.1111/J.1432-1033.1990.Tb19165.X  0.545
1990 Klinge CM, Bambara RA, Zain S, Hilf R. Nuclease sensitivity of estradiol-charged estrogen receptor binding sites in nuclei isolated from normal and neoplastic rat mammary tissues. Journal of Steroid Biochemistry. 36: 7-14. PMID 2194077 DOI: 10.1016/0022-4731(90)90108-5  0.328
1989 Liu YC, Marraccino RL, Keng PC, Bambara RA, Lord EM, Chou WG, Zain SB. Requirement for proliferating cell nuclear antigen expression during stages of the Chinese hamster ovary cell cycle. Biochemistry. 28: 2967-74. PMID 2568123 DOI: 10.1021/Bi00433A034  0.342
1988 Marraccino RL, Wahl AF, Keng PC, Lord EM, Bambara RA. Cell cycle dependent activities of DNA polymerases alpha and delta in Chinese hamster ovary cells. Biochemistry. 26: 7864-70. PMID 3427109 DOI: 10.1021/Bi00398A049  0.5
1988 Peale FV, Ludwig LB, Zain S, Hilf R, Bambara RA. Properties of a high-affinity DNA binding site for estrogen receptor. Proceedings of the National Academy of Sciences of the United States of America. 85: 1038-42. PMID 3422476 DOI: 10.1073/Pnas.85.4.1038  0.408
1988 Sabatino RD, Myers TW, Bambara RA, Kwon-Shin O, Marraccino RL, Frickey PH. Calf thymus DNA polymerases alpha and delta are capable of highly processive DNA synthesis. Biochemistry. 27: 2998-3004. PMID 3401462 DOI: 10.1021/Bi00408A050  0.505
1988 Sabatino RD, Bambara RA. Properties of the 3' to 5' exonuclease associated with calf DNA polymerase delta. Biochemistry. 27: 2266-71. PMID 3382621 DOI: 10.1021/Bi00407A003  0.595
1987 Kunkel TA, Sabatino RD, Bambara RA. Exonucleolytic proofreading by calf thymus DNA polymerase delta. Proceedings of the National Academy of Sciences of the United States of America. 84: 4865-9. PMID 3474631 DOI: 10.1073/Pnas.84.14.4865  0.562
1987 Lerea CC, Klinge CM, Bambara RA, Zain S, Hilf R. Characterization of a cytosolic inhibitor of calf estrogen receptor binding to nuclei. Endocrinology. 121: 1146-54. PMID 3304979 DOI: 10.1210/Endo-121-3-1146  0.312
1987 Wahl AF, Crute JJ, Sabatino RD, Bodner JB, Marraccino RL, Harwell LW, Lord EM, Bambara RA. Properties of two forms of DNA polymerase delta from calf thymus. Biochemistry. 25: 7821-7. PMID 3099836 DOI: 10.1021/Bi00372A006  0.545
1987 Hockensmith JW, Wahl AF, Kowalski S, Bambara RA. Purification of a calf thymus DNA-dependent adenosinetriphosphatase that prefers a primer-template junction effector. Biochemistry. 25: 7812-21. PMID 3026461 DOI: 10.1021/Bi00372A005  0.584
1986 Crute JJ, Wahl AF, Bambara RA. Purification and characterization of two new high molecular weight forms of DNA polymerase delta. Biochemistry. 25: 26-36. PMID 3954990 DOI: 10.1021/Bi00349A005  0.561
1985 Bambara RA, Crute JJ, Wahl AF. Is Ap4A an activator of eukaryotic DNA replication? Cancer Investigation. 3: 473-9. PMID 4052834 DOI: 10.3109/07357908509039809  0.531
1985 Cushing CL, Bambara RA, Hilf R. Interactions of estrogen-receptor and antiestrogen-receptor complexes with nuclei in vitro. Endocrinology. 116: 2419-29. PMID 3996321 DOI: 10.1210/Endo-116-6-2419  0.318
1984 Wahl AF, Kowalski SP, Harwell LW, Lord EM, Bambara RA. Immunoaffinity purification and properties of a high molecular weight calf thymus DNA alpha-polymerase. Biochemistry. 23: 1895-9. PMID 6722130 DOI: 10.1021/Bi00304A001  0.46
1984 Lawton KG, Wierowski JV, Schechter S, Hilf R, Bambara RA. Analysis of the mechanism of ATP stimulation of calf thymus DNA alpha-polymerase. Biochemistry. 23: 4294-300. PMID 6487601 DOI: 10.1021/Bi00314A007  0.481
1984 Pratt K, Wierowski JV, Hilf R, Bambara RA. Bovine estrogen receptor binds chromatin at pre-existing nuclease hypersensitive sites. Molecular and Cellular Endocrinology. 35: 205-14. PMID 6329851 DOI: 10.1016/0303-7207(84)90018-2  0.36
1983 LaDuca RJ, Fay PJ, Chuang C, McHenry CS, Bambara RA. Site-specific pausing of deoxyribonucleic acid synthesis catalyzed by four forms of Escherichia coli DNA polymerase III Biochemistry. 22: 5177-5188. PMID 6360204 DOI: 10.1021/Bi00291A018  0.733
1983 Wahl AF, Hockensmith JW, Kowalski S, Bambara RA. Alternative explanation for excision repair deficiency caused by the polAex1 mutation. Journal of Bacteriology. 155: 922-5. PMID 6348032 DOI: 10.1128/Jb.155.2.922-925.1983  0.423
1981 Hockensmith JW, Bambara RA. Kinetic characteristics which distinguish two forms of calf thymus DNA polymerase alpha. Biochemistry. 20: 227-32. PMID 7470474 DOI: 10.1021/Bi00504A038  0.388
1981 Matson SW, Bambara RA. Short deoxyribonucleic acid repair patch length in Escherichia coli is determined by the processive mechanism of deoxyribonucleic acid polymerase I Journal of Bacteriology. 146: 275-284. PMID 7012116 DOI: 10.1128/Jb.146.1.275-284.1981  0.772
1981 Matson SW, Bambara RA. Duplex DNA binding activity of the avian myeloblastosis virus DNA polymerase Bba Section Nucleic Acids and Protein Synthesis. 652: 29-38. PMID 6260187 DOI: 10.1016/0005-2787(81)90205-7  0.774
1980 Matson SW, Fay PJ, Bambara RA. Mechanism of inhibition of the Avian Myeloblastosis Virus deoxyribonucleic acid polymerase by adriamycin Biochemistry. 19: 2089-2096. PMID 6155137 DOI: 10.1021/Bi00551A014  0.817
1975 Dykes G, Bambara R, Marians K, Wu R. On the statistical significance of primary structural features found in DNA-protein interaction sites. Nucleic Acids Research. 2: 327-45. PMID 1093137 DOI: 10.1093/Nar/2.3.327  0.629
1975 Wu R, Bambara R, Jay E. Recent advances in DNA sequence analysis. Crc Critical Reviews in Biochemistry. 2: 455-512. PMID 164328 DOI: 10.3109/10409237509102550  0.36
1974 Ghangas GS, Jay E, Bambara R, Wu R. Nucleotide sequence analysis of DNA. XI. The 3' terminal sequences of bacteriophage lambda and phi 80 DNA. Biochemical and Biophysical Research Communications. 54: 998-1007. PMID 4753202 DOI: 10.1016/0006-291X(73)90793-6  0.651
1974 Wu R, Padmanabhan R, Bambara R. Nucleotide sequence analysis of bacteriophage DNA. Methods in Enzymology. 29: 231-53. PMID 4368968 DOI: 10.1016/0076-6879(74)29025-6  0.668
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