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Ernest T. Lam, Ph.D. - Publications

Affiliations: 
Pharmaceutical Sciences and Pharmacogenomics University of California, San Francisco, San Francisco, CA 
Area:
Analysis of Complex Genetic Traits
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hastie A, Pang AW, Lee J, Lam ET, Anantharaman T, Sadowski H, Oldakowski M. Abstract 3543: Facile genome-wide detection of genomic fusions and other somatic chromosomal abnormalities through Bionano Whole Genome Imaging Cancer Research. 80: 3543-3543. DOI: 10.1158/1538-7445.Am2020-3543  0.473
2019 Chaisson MJP, Sanders AD, Zhao X, Malhotra A, Porubsky D, Rausch T, Gardner EJ, Rodriguez OL, Guo L, Collins RL, Fan X, Wen J, Handsaker RE, Fairley S, Kronenberg ZN, ... ... Lam ET, et al. Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nature Communications. 10: 1784. PMID 30992455 DOI: 10.1038/S41467-018-08148-Z  0.653
2019 Sharim H, Grunwald A, Gabrieli T, Michaeli Y, Margalit S, Torchinsky D, Arielly R, Nifker G, Juhasz M, Gularek F, Almalvez M, Dufault B, Chandra SS, Liu A, Bhattacharya S, ... ... Lam ET, et al. Long-read single-molecule maps of the functional methylome. Genome Research. PMID 30846530 DOI: 10.1101/Gr.240739.118  0.463
2019 Levy-Sakin M, Pastor S, Mostovoy Y, Li L, Leung AKY, McCaffrey J, Young E, Lam ET, Hastie AR, Wong KHY, Chung CYL, Ma W, Sibert J, Rajagopalan R, Jin N, et al. Genome maps across 26 human populations reveal population-specific patterns of structural variation. Nature Communications. 10: 1025. PMID 30833565 DOI: 10.1038/S41467-019-08992-7  0.698
2019 Lam E, Delpu Y. Abstract 5117: Comprehensive structural analysis of cancer genomes by genome mapping Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-5117  0.446
2018 Chan S, Lam E, Saghbini M, Bocklandt S, Hastie A, Cao H, Holmlin E, Borodkin M. Structural Variation Detection and Analysis Using Bionano Optical Mapping. Methods in Molecular Biology (Clifton, N.J.). 1833: 193-203. PMID 30039375 DOI: 10.1007/978-1-4939-8666-8_16  0.464
2018 Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, ... ... Lam ET, et al. High-resolution comparative analysis of great ape genomes. Science (New York, N.Y.). 360. PMID 29880660 DOI: 10.1126/Science.Aar6343  0.471
2017 Li L, Leung AK, Kwok TP, Lai YYY, Pang IK, Chung GT, Mak ACY, Poon A, Chu C, Li M, Wu JJK, Lam ET, Cao H, Lin C, Sibert J, et al. OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps. Genome Biology. 18: 230. PMID 29195502 DOI: 10.1186/S13059-017-1356-2  0.64
2017 Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, et al. Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome. Nature Genetics. PMID 28263316 DOI: 10.1038/Ng.3802  0.397
2016 Mostovoy Y, Levy-Sakin M, Lam J, Lam ET, Hastie AR, Marks P, Lee J, Chu C, Lin C, Džakula Ž, Cao H, Schlebusch SA, Giorda K, Schnall-Levin M, Wall JD, et al. A hybrid approach for de novo human genome sequence assembly and phasing. Nature Methods. PMID 27159086 DOI: 10.1038/Nmeth.3865  0.618
2016 Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/Ncomms10164  0.395
2015 Mak AC, Lai YY, Lam ET, Kwok TP, Leung AK, Poon A, Mostovoy Y, Hastie AR, Stedman W, Anantharaman T, Andrews W, Zhou X, Pang AW, Dai H, Chu C, et al. Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays. Genetics. PMID 26510793 DOI: 10.1534/Genetics.115.183483  0.698
2015 Shelton JM, Coleman MC, Herndon N, Lu N, Lam ET, Anantharaman T, Sheth P, Brown SJ. Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool. Bmc Genomics. 16: 734. PMID 26416786 DOI: 10.1186/S12864-015-1911-8  0.369
2015 Tranah GJ, Yaffe K, Katzman SM, Lam ET, Pawlikowska L, Kwok PY, Schork NJ, Manini TM, Kritchevsky S, Thomas F, Newman AB, Harris TB, Coleman AL, Gorin MB, Helzner EP, et al. Mitochondrial DNA Heteroplasmy Associations With Neurosensory and Mobility Function in Elderly Adults. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. PMID 26328603 DOI: 10.1093/Gerona/Glv097  0.645
2015 English AC, Salerno WJ, Hampton OA, Gonzaga-Jauregui C, Ambreth S, Ritter DI, Beck CR, Davis CF, Dahdouli M, Ma S, Carroll A, Veeraraghavan N, Bruestle J, Drees B, Hastie A, ... Lam ET, et al. Assessing structural variation in a personal genome-towards a human reference diploid genome. Bmc Genomics. 16: 286. PMID 25886820 DOI: 10.1186/S12864-015-1479-3  0.489
2014 Cao H, Hastie AR, Cao D, Lam ET, Sun Y, Huang H, Liu X, Lin L, Andrews W, Chan S, Huang S, Tong X, Requa M, Anantharaman T, Krogh A, et al. Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology. Gigascience. 3: 34. PMID 25671094 DOI: 10.1186/2047-217X-3-34  0.518
2014 Hariani GD, Lam ET, Lam EJ, Havener T, Kwok PY, McLeod HL, Wagner MJ, Motsinger-Reif AA. Application of next generation sequencing to CEPH cell lines to discover variants associated with FDA approved chemotherapeutics. Bmc Research Notes. 7: 360. PMID 24924344 DOI: 10.1186/1756-0500-7-360  0.518
2014 Hariani GD, Lam ET, Havener T, Kwok PY, McLeod HL, Wagner MJ, Motsinger-Reif AA. Correction: Application of next generation sequencing to CEPH cell lines to discover variants associated with FDA approved chemotherapeutics Bmc Research Notes. 7. DOI: 10.1186/1756-0500-7-652  0.511
2014 Hastie A, Lam E, Dai H, Andrews W, Pang A, Anantharaman T, Saghbini M, Sadoski H, Austin M, Dickinson T, Yang X, Dzakula Z, Rossi MR, Kwok P, Xu X, et al. Feasibility of Population Scale Comprehensive Identification and Analysis of Complex Structural Variations in Cancer Genome Using Nanochannel Array Blood. 124: 476-476. DOI: 10.1182/Blood.V124.21.476.476  0.513
2013 Martin PM, Yang X, Robin N, Lam E, Rabinowitz JS, Erdman CA, Quinn J, Weiss LA, Hamilton SP, Kwok PY, Moon RT, Cheyette BN. A rare WNT1 missense variant overrepresented in ASD leads to increased Wnt signal pathway activation. Translational Psychiatry. 3: e301. PMID 24002087 DOI: 10.1038/Tp.2013.75  0.506
2013 Hastie AR, Dong L, Smith A, Finklestein J, Lam ET, Huo N, Cao H, Kwok PY, Deal KR, Dvorak J, Luo MC, Gu Y, Xiao M. Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome. Plos One. 8: e55864. PMID 23405223 DOI: 10.1371/Journal.Pone.0055864  0.628
2013 Hastie AR, Dong L, Smith A, Finklestein J, Lam ET, Huo N, Cao H, Kwok PY, Deal KR, Dvorak J, Luo MC, Gu Y, Xiao M. Correction: Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome (PLoS ONE) Plos One. 8. DOI: 10.1371/annotation/8629ed33-c566-4543-b657-eea1792f384c  0.577
2012 Yokoyama JS, Lam ET, Ruhe AL, Erdman CA, Robertson KR, Webb AA, Williams DC, Chang ML, Hytönen MK, Lohi H, Hamilton SP, Neff MW. Variation in genes related to cochlear biology is strongly associated with adult-onset deafness in border collies. Plos Genetics. 8: e1002898. PMID 23028339 DOI: 10.1371/Journal.Pgen.1002898  0.426
2012 Lam ET, Hastie A, Lin C, Ehrlich D, Das SK, Austin MD, Deshpande P, Cao H, Nagarajan N, Xiao M, Kwok PY. Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly. Nature Biotechnology. 30: 771-6. PMID 22797562 DOI: 10.1038/Nbt.2303  0.615
2012 Tranah GJ, Nalls MA, Katzman SM, Yokoyama JS, Lam ET, Zhao Y, Mooney S, Thomas F, Newman AB, Liu Y, Cummings SR, Harris TB, Yaffe K. Mitochondrial DNA sequence variation associated with dementia and cognitive function in the elderly. Journal of Alzheimer's Disease : Jad. 32: 357-72. PMID 22785396 DOI: 10.3233/Jad-2012-120466  0.369
2012 Tranah GJ, Lam ET, Katzman SM, Nalls MA, Zhao Y, Evans DS, Yokoyama JS, Pawlikowska L, Kwok PY, Mooney S, Kritchevsky S, Goodpaster BH, Newman AB, Harris TB, Manini TM, et al. Mitochondrial DNA sequence variation is associated with free-living activity energy expenditure in the elderly. Biochimica Et Biophysica Acta. 1817: 1691-700. PMID 22659402 DOI: 10.1016/J.Bbabio.2012.05.012  0.698
2012 Smith RP, Lam ET, Markova S, Yee SW, Ahituv N. Pharmacogene regulatory elements: from discovery to applications. Genome Medicine. 4: 45. PMID 22630332 DOI: 10.1186/Gm344  0.337
2012 Lam ET, Bracci PM, Holly EA, Chu C, Poon A, Wan E, White K, Kwok PY, Pawlikowska L, Tranah GJ. Mitochondrial DNA sequence variation and risk of pancreatic cancer. Cancer Research. 72: 686-95. PMID 22174369 DOI: 10.1158/0008-5472.Can-11-1682  0.691
2012 Tranah GJ, Lam ET, Bracci PM, Holly EA. Abstract 1666: Mitochondrial DNA sequence mutations and risk of pancreatic cancer Cancer Research. 72: 1666-1666. DOI: 10.1158/1538-7445.Am2012-1666  0.43
2011 Birnbaum RY, Hayashi G, Cohen I, Poon A, Chen H, Lam ET, Kwok PY, Birk OS, Liao W. Association analysis identifies ZNF750 regulatory variants in psoriasis. Bmc Medical Genetics. 12: 167. PMID 22185198 DOI: 10.1186/1471-2350-12-167  0.573
2011 Durinck S, Ho C, Wang NJ, Liao W, Jakkula LR, Collisson EA, Pons J, Chan SW, Lam ET, Chu C, Park K, Hong SW, Hur JS, Huh N, Neuhaus IM, et al. Temporal dissection of tumorigenesis in primary cancers. Cancer Discovery. 1: 137-43. PMID 21984974 DOI: 10.1158/2159-8290.Cd-11-0028  0.535
2011 Musone SL, Taylor KE, Nititham J, Chu C, Poon A, Liao W, Lam ET, Ma A, Kwok PY, Criswell LA. Sequencing of TNFAIP3 and association of variants with multiple autoimmune diseases. Genes and Immunity. 12: 176-82. PMID 21326317 DOI: 10.1038/Gene.2010.64  0.701
2011 Durinck S, Ho C, Wang NJ, Liao W, Jakkula LR, Collisson EA, Pons J, Chan S, Lam ET, Chu C, Park K, Hong S, Hur JS, Huh N, Neuhaus IM, et al. Timing chromosomal abnormalities using mutation data Genome Biology. 12: P39. DOI: 10.1186/Gb-2011-12-S1-P39  0.468
2009 Cleaver JE, Lam ET, Revet I. Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity. Nature Reviews. Genetics. 10: 756-68. PMID 19809470 DOI: 10.1038/Nrg2663  0.322
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