Apurva Narechania - Publications

Affiliations: 
Sackler institute for comparative genomics American Museum of Natural History, New York, NY, United States 

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Perelman SS, James DBA, Boguslawski KM, Nelson CW, Ilmain JK, Zwack EE, Prescott RA, Mohamed A, Tam K, Chan R, Narechania A, Pawline MB, Vozhilla N, Moustafa AM, Kim SY, et al. Genetic variation of staphylococcal LukAB toxin determines receptor tropism. Nature Microbiology. PMID 33875847 DOI: 10.1038/s41564-021-00890-3  0.56
2021 Moustafa AM, Velusamy SK, Denu L, Narechania A, Fine DH, Planet PJ. Adaptation by Ancient Horizontal Acquisition of Butyrate Metabolism Genes in Aggregatibacter actinomycetemcomitans. Mbio. 12. PMID 33758084 DOI: 10.1128/mBio.03581-20  0.56
2020 Rios R, Reyes J, Carvajal LP, Rincon S, Panesso D, Echeverri AM, Dinh A, Kolokotronis SO, Narechania A, Tran TT, Munita JM, Murray BE, Planet PJ, Arias CA, Diaz L. Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure. Scientific Reports. 10: 5636. PMID 32221315 DOI: 10.1038/S41598-020-62371-7  0.56
2019 Khan A, Davlieva M, Panesso D, Rincon S, Miller WR, Diaz L, Reyes J, Cruz MR, Pemberton O, Nguyen AH, Siegel SD, Planet PJ, Narechania A, Latorre M, Rios R, et al. Antimicrobial sensing coupled with cell membrane remodeling mediates antibiotic resistance and virulence in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31818937 DOI: 10.1073/Pnas.1916037116  0.56
2019 Acker KP, Wong Fok Lung T, West E, Craft J, Narechania A, Smith H, O'Brien K, Moustafa AM, Lauren C, Planet PJ, Prince A. Strains of Staphylococcus aureus that Colonize and Infect Skin Harbor Mutations in Metabolic Genes. Iscience. 19: 281-290. PMID 31401351 DOI: 10.1016/J.Isci.2019.07.037  0.56
2019 Riquelme SA, Lozano C, Moustafa AM, Liimatta K, Tomlinson KL, Britto C, Khanal S, Gill SK, Narechania A, Azcona-Gutiérrez JM, DiMango E, Saénz Y, Planet P, Prince A. CFTR-PTEN-dependent mitochondrial metabolic dysfunction promotes airway infection. Science Translational Medicine. 11. PMID 31270271 DOI: 10.1126/Scitranslmed.Aav4634  0.56
2019 Botelho AMN, Cerqueira E Costa MO, Moustafa AM, Beltrame CO, Ferreira FA, Côrtes MF, Costa BSS, Silva DNS, Bandeira PT, Lima NCB, Souza RC, de Almeida LGP, Vasconcelos ATR, Narechania A, Ryan C, et al. Local Diversification of Methicillin- Resistant ST239 in South America After Its Rapid Worldwide Dissemination. Frontiers in Microbiology. 10: 82. PMID 30873127 DOI: 10.3389/Fmicb.2019.00082  0.56
2018 Zapotoczna M, Riboldi GP, Moustafa AM, Dickson E, Narechania A, Morrissey JA, Planet PJ, Holden MTG, Waldron KJ, Geoghegan JA. Mobile-Genetic-Element-Encoded Hypertolerance to Copper Protects Staphylococcus aureus from Killing by Host Phagocytes. Mbio. 9. PMID 30327441 DOI: 10.1128/Mbio.00550-18  0.56
2018 Arias CA, Reyes J, Carvajal LP, Rincon S, Diaz L, Panesso D, Ibarra G, Rios R, Munita JM, Salles MJ, Alvarez-Moreno C, Labarca J, Garcia C, Luna CM, Mejia-Villatoro C, ... ... Narechania A, et al. Erratum for Arias et al., "A Prospective Cohort Multicenter Study of Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Nine Latin American Countries". Antimicrobial Agents and Chemotherapy. 62. PMID 29475888 DOI: 10.1128/Aac.00095-18  0.56
2017 Rojas LJ, Weinstock GM, De La Cadena E, Diaz L, Rios R, Hanson BM, Brown JS, Vats P, Phillips DS, Nguyen H, Hujer KM, Correa A, Adams MD, Perez F, Sodergren E, ... Narechania A, et al. An Analysis of the Epidemic of KPC-Producing Klebsiella pneumoniae: Convergence of Two Evolutionary Mechanisms Creates the "Perfect Storm". The Journal of Infectious Diseases. PMID 29029188 DOI: 10.1093/Infdis/Jix524  0.56
2017 Arias CA, Reyes J, Carvajal LP, Rincon S, Diaz L, Panesso D, Ibarra G, Rios R, Munita JM, Salles MJ, Alvarez-Moreno C, Labarca J, Garcia C, Luna CM, Mejia-Villatoro C, ... ... Narechania A, et al. Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Latin-America: A Prospective Cohort Multicenter Study in Nine Countries. Antimicrobial Agents and Chemotherapy. PMID 28760895 DOI: 10.1128/Aac.00816-17  0.56
2016 Brown TS, Narechania A, Walker JR, Planet PJ, Bifani PJ, Kolokotronis SO, Kreiswirth BN, Mathema B. Genomic epidemiology of Lineage 4 Mycobacterium tuberculosis subpopulations in New York city and New Jersey, 1999-2009. Bmc Genomics. 17: 947. PMID 27871225 DOI: 10.1093/Ofid/Ofw172.417  0.56
2016 Narechania A, Baker R, DeSalle R, Mathema B, Kolokotronis SO, Kreiswirth B, Planet PJ. Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets. Gigascience. 5: 44. PMID 27776538 DOI: 10.1186/S13742-016-0152-3  0.56
2016 Planet PJ, Narechania A, Chen L, Mathema B, Boundy S, Archer G, Kreiswirth B. Architecture of a Species: Phylogenomics of Staphylococcus aureus. Trends in Microbiology. PMID 27751626 DOI: 10.1016/J.Tim.2016.09.009  0.56
2016 Poznik GD, Xue Y, Mendez FL, Willems TF, Massaia A, Wilson Sayres MA, Ayub Q, McCarthy SA, Narechania A, Kashin S, Chen Y, Banerjee R, Rodriguez-Flores JL, Cerezo M, Shao H, et al. Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences. Nature Genetics. PMID 27111036 DOI: 10.1038/Ng.3559  0.56
2016 Yang A, Narechania A, Kim E. Rickettsial endosymbiont in the "early-diverging" streptophyte green alga Mesostigma viride. Journal of Phycology. 52: 219-29. PMID 27037587 DOI: 10.1111/Jpy.12385  0.56
2016 Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/Ncomms10164  0.56
2015 Panesso D, Planet PJ, Diaz L, Hugonnet JE, Tran TT, Narechania A, Munita JM, Rincon S, Carvajal LP, Reyes J, Londoño A, Smith H, Sebra R, Deikus G, Weinstock GM, et al. Methicillin-Susceptible, Vancomycin-Resistant Staphylococcus aureus, Brazil. Emerging Infectious Diseases. 21: 1844-8. PMID 26402569 DOI: 10.3201/Eid2110.141914  0.56
2015 Burns JA, Paasch A, Narechania A, Kim E. Comparative genomics of a bacterivorous green alga reveals evolutionary causalities and consequences of phago-mixotrophic mode of nutrition. Genome Biology and Evolution. PMID 26224703 DOI: 10.1093/Gbe/Evv144  0.56
2015 Planet PJ, Diaz L, Kolokotronis SO, Narechania A, Reyes J, Xing G, Rincon S, Smith H, Panesso D, Ryan C, Smith DP, Guzman M, Zurita J, Sebra R, Deikus G, et al. Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America. The Journal of Infectious Diseases. PMID 26048971 DOI: 10.1093/Infdis/Jiv320  0.56
2014 Hooven TA, Randis TM, Daugherty SC, Narechania A, Planet PJ, Tettelin H, Ratner AJ. Complete Genome Sequence of Streptococcus agalactiae CNCTC 10/84, a Hypervirulent Sequence Type 26 Strain. Genome Announcements. 2. PMID 25540350 DOI: 10.1128/Genomea.01338-14  0.56
2014 Benson MA, Ohneck EA, Ryan C, Alonzo F, Smith H, Narechania A, Kolokotronis SO, Satola SW, Uhlemann AC, Sebra R, Deikus G, Shopsin B, Planet PJ, Torres VJ. Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element. Molecular Microbiology. 93: 664-81. PMID 24962815 DOI: 10.1111/Mmi.12682  0.56
2014 Rossi F, Diaz L, Wollam A, Panesso D, Zhou Y, Rincon S, Narechania A, Xing G, Di Gioia TS, Doi A, Tran TT, Reyes J, Munita JM, Carvajal LP, Hernandez-Roldan A, et al. Transferable vancomycin resistance in a community-associated MRSA lineage. The New England Journal of Medicine. 370: 1524-31. PMID 24738669 DOI: 10.1056/Nejmoa1303359  0.56
2014 Parker D, Narechania A, Sebra R, Deikus G, Larussa S, Ryan C, Smith H, Prince A, Mathema B, Ratner AJ, Kreiswirth B, Planet PJ. Genome Sequence of Bacterial Interference Strain Staphylococcus aureus 502A. Genome Announcements. 2. PMID 24723721 DOI: 10.1128/Genomea.00284-14  0.56
2014 Parker D, Planet PJ, Soong G, Narechania A, Prince A. Induction of type I interferon signaling determines the relative pathogenicity of Staphylococcus aureus strains. Plos Pathogens. 10: e1003951. PMID 24586160 DOI: 10.1371/Journal.Ppat.1003951  0.56
2013 Planet PJ, LaRussa SJ, Dana A, Smith H, Xu A, Ryan C, Uhlemann AC, Boundy S, Goldberg J, Narechania A, Kulkarni R, Ratner AJ, Geoghegan JA, Kolokotronis SO, Prince A. Emergence of the epidemic methicillin-resistant Staphylococcus aureus strain USA300 coincides with horizontal transfer of the arginine catabolic mobile element and speG-mediated adaptations for survival on skin. Mbio. 4: e00889-13. PMID 24345744 DOI: 10.1128/Mbio.00889-13  0.56
2013 Pooyaei Mehr SF, DeSalle R, Kao HT, Narechania A, Han Z, Tchernov D, Pieribone V, Gruber DF. Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals. Bmc Genomics. 14: 546. PMID 23937070 DOI: 10.1186/1471-2164-14-546  0.56
2013 Planet PJ, Narechania A, Hymes SR, Gagliardo C, Huard RC, Whittier S, Della-Latta P, Ratner AJ. Bordetella holmesii: initial genomic analysis of an emerging opportunist. Pathogens and Disease. 67: 132-5. PMID 23620158 DOI: 10.1111/2049-632X.12028  0.56
2013 Planet PJ, Rampersaud R, Hymes SR, Whittier S, Della-Latta PA, Narechania A, Daugherty SC, Santana-Cruz I, Desalle R, Ravel J, Ratner AJ. Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1. Genome Announcements. 1. PMID 23405291 DOI: 10.1128/Genomea.00117-12  0.56
2012 Simon S, Narechania A, Desalle R, Hadrys H. Insect phylogenomics: exploring the source of incongruence using new transcriptomic data. Genome Biology and Evolution. 4: 1295-309. PMID 23175716 DOI: 10.1093/Gbe/Evs104  0.56
2012 Baker RH, Narechania A, Johns PM, Wilkinson GS. Gene duplication, tissue-specific gene expression and sexual conflict in stalk-eyed flies (Diopsidae). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 367: 2357-75. PMID 22777023 DOI: 10.1098/Rstb.2011.0287  0.56
2012 Pentony MM, Winters P, Penfold-Brown D, Drew K, Narechania A, DeSalle R, Bonneau R, Purugganan MD. The plant proteome folding project: structure and positive selection in plant protein families. Genome Biology and Evolution. 4: 360-71. PMID 22345424 DOI: 10.1093/Gbe/Evs015  0.56
2012 Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ. Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria. Genome Biology and Evolution. 4: 30-43. PMID 22094860 DOI: 10.1093/Gbe/Evr121  0.56
2011 Kvist S, Narechania A, Oceguera-Figueroa A, Fuks B, Siddall ME. Phylogenomics of Reichenowia parasitica, an alphaproteobacterial endosymbiont of the freshwater leech Placobdella parasitica. Plos One. 6: e28192. PMID 22132238 DOI: 10.1371/Journal.Pone.0028192  0.56
2010 Yassin A, Markow TA, Narechania A, O'Grady PM, DeSalle R. The genus Drosophila as a model for testing tree- and character-based methods of species identification using DNA barcoding. Molecular Phylogenetics and Evolution. 57: 509-17. PMID 20800099 DOI: 10.1016/J.Ympev.2010.08.020  0.56
2010 Yassin A, Lienau EK, Narechania A, DeSalle R. Catching the phylogenic history through the ontogenic hourglass: a phylogenomic analysis of Drosophila body segmentation genes. Evolution & Development. 12: 288-95. PMID 20565539 DOI: 10.1111/J.1525-142X.2010.00414.X  0.56
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Narechania A, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534  0.56
2009 Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D. A genome-wide characterization of microRNA genes in maize. Plos Genetics. 5: e1000716. PMID 19936050 DOI: 10.1371/Journal.Pgen.1000716  0.56
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728  0.56
2008 Kurtz S, Narechania A, Stein JC, Ware D. A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes Bmc Genomics. 9: 517. PMID 18976482 DOI: 10.1186/1471-2164-9-517  0.56
2005 Narechania A, Chen Z, DeSalle R, Burk RD. Phylogenetic incongruence among oncogenic genital alpha human papillomaviruses. Journal of Virology. 79: 15503-10. PMID 16306621 DOI: 10.1128/Jvi.79.24.15503-15510.2005  0.56
2005 Narechania A, Terai M, Burk RD. Overlapping reading frames in closely related human papillomaviruses result in modular rates of selection within E2 Journal of General Virology. 86: 1307-1313. PMID 15831941 DOI: 10.1099/Vir.0.80747-0  0.56
2004 Narechania A, Terai M, Chen Z, DeSalle R, Burk RD. Lack of the canonical pRB-binding domain in the E7 ORF of artiodactyl papillomaviruses is associated with the development of fibropapillomas. The Journal of General Virology. 85: 1243-50. PMID 15105541 DOI: 10.1099/Vir.0.19765-0  0.56
2003 Thomas PD, Campbell MJ, Kejariwal A, Mi H, Karlak B, Daverman R, Diemer K, Muruganujan A, Narechania A. PANTHER: a library of protein families and subfamilies indexed by function. Genome Research. 13: 2129-41. PMID 12952881 DOI: 10.1101/Gr.772403  0.56
2003 Mi H, Vandergriff J, Campbell M, Narechania A, Majoros W, Lewis S, Thomas PD, Ashburner M. Assessment of genome-wide protein function classification for Drosophila melanogaster. Genome Research. 13: 2118-28. PMID 12952880 DOI: 10.1101/Gr.771603  0.56
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