Paul J. Planet, Ph.D. - Publications

Affiliations: 
2003 Columbia University, New York, NY 
Area:
Microbiology

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Birger R, Morita H, Comito D, Filip I, Galanti M, Lane B, Ligon C, Rosenbloom D, Shittu A, Ud-Dean M, Desalle R, Planet P, Shaman J. Asymptomatic Shedding of Respiratory Virus among an Ambulatory Population across Seasons. Msphere. 3. PMID 29997120 DOI: 10.1128/mSphere.00249-18  0.72
2018 Shaman J, Morita H, Birger R, Boyle M, Comito D, Lane B, Ligon C, Smith H, Desalle R, Planet P. Asymptomatic summertime shedding of respiratory viruses. The Journal of Infectious Diseases. PMID 29300926 DOI: 10.1093/infdis/jix685  0.72
2016 Narechania A, Baker R, DeSalle R, Mathema B, Kolokotronis SO, Kreiswirth B, Planet PJ. Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets. Gigascience. 5: 44. PMID 27776538 DOI: 10.1186/s13742-016-0152-3  0.72
2016 Planet PJ, Parker D, Cohen TS, Smith H, Leon JD, Ryan C, Hammer TJ, Fierer N, Chen EI, Prince AS. Lambda Interferon Restructures the Nasal Microbiome and Increases Susceptibility to Staphylococcus aureus Superinfection. Mbio. 7. PMID 26861017 DOI: 10.1128/mBio.01939-15  0.92
2016 Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, ... ... Planet PJ, et al. Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius. Nature Communications. 7: 10164. PMID 26836631 DOI: 10.1038/ncomms10164  0.92
2015 Panesso D, Planet PJ, Diaz L, Hugonnet JE, Tran TT, Narechania A, Munita JM, Rincon S, Carvajal LP, Reyes J, Londoño A, Smith H, Sebra R, Deikus G, Weinstock GM, et al. Methicillin-Susceptible, Vancomycin-Resistant Staphylococcus aureus, Brazil. Emerging Infectious Diseases. 21: 1844-8. PMID 26402569 DOI: 10.3201/eid2110.141914  0.92
2015 Planet PJ, Diaz L, Kolokotronis SO, Narechania A, Reyes J, Xing G, Rincon S, Smith H, Panesso D, Ryan C, Smith DP, Guzman M, Zurita J, Sebra R, Deikus G, et al. Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America. The Journal of Infectious Diseases. PMID 26048971 DOI: 10.1093/infdis/jiv320  0.92
2015 Soong G, Paulino F, Wachtel S, Parker D, Wickersham M, Zhang D, Brown A, Lauren C, Dowd M, West E, Horst B, Planet P, Prince A. Methicillin-resistant Staphylococcus aureus adaptation to human keratinocytes. Mbio. 6. PMID 25900653 DOI: 10.1128/mBio.00289-15  0.92
2015 Antonov NK, Garzon MC, Morel KD, Whittier S, Planet PJ, Lauren CT. High prevalence of mupirocin resistance in Staphylococcus aureus isolates from a pediatric population. Antimicrobial Agents and Chemotherapy. 59: 3350-6. PMID 25824213 DOI: 10.1128/AAC.00079-15  0.92
2015 Parker D, Ryan CL, Alonzo F, Torres VJ, Planet PJ, Prince AS. CD4+ T cells promote the pathogenesis of Staphylococcus aureus pneumonia. The Journal of Infectious Diseases. 211: 835-45. PMID 25240171 DOI: 10.1093/infdis/jiu525  0.92
2014 Benson MA, Ohneck EA, Ryan C, Alonzo F, Smith H, Narechania A, Kolokotronis SO, Satola SW, Uhlemann AC, Sebra R, Deikus G, Shopsin B, Planet PJ, Torres VJ. Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element. Molecular Microbiology. 93: 664-81. PMID 24962815 DOI: 10.1111/mmi.12682  0.92
2014 Rossi F, Diaz L, Wollam A, Panesso D, Zhou Y, Rincon S, Narechania A, Xing G, Di Gioia TS, Doi A, Tran TT, Reyes J, Munita JM, Carvajal LP, Hernandez-Roldan A, ... ... Planet PJ, et al. Transferable vancomycin resistance in a community-associated MRSA lineage. The New England Journal of Medicine. 370: 1524-31. PMID 24738669 DOI: 10.1056/NEJMoa1303359  0.92
2014 Ahn DS, Parker D, Planet PJ, Nieto PA, Bueno SM, Prince A. Secretion of IL-16 through TNFR1 and calpain-caspase signaling contributes to MRSA pneumonia. Mucosal Immunology. 7: 1366-74. PMID 24736233 DOI: 10.1038/mi.2014.24  0.92
2014 Parker D, Planet PJ, Soong G, Narechania A, Prince A. Induction of type I interferon signaling determines the relative pathogenicity of Staphylococcus aureus strains. Plos Pathogens. 10: e1003951. PMID 24586160 DOI: 10.1371/journal.ppat.1003951  0.92
2014 Christensen H, Kuhnert P, Norskov-Lauritsen N, Planet PJ, Bisgaard M. The family pasteurellaceae The Prokaryotes: Gammaproteobacteria. 2147483647: 535-564. DOI: 10.1007/978-3-642-38922-1_224  0.92
2013 Planet PJ, LaRussa SJ, Dana A, Smith H, Xu A, Ryan C, Uhlemann AC, Boundy S, Goldberg J, Narechania A, Kulkarni R, Ratner AJ, Geoghegan JA, Kolokotronis SO, Prince A. Emergence of the epidemic methicillin-resistant Staphylococcus aureus strain USA300 coincides with horizontal transfer of the arginine catabolic mobile element and speG-mediated adaptations for survival on skin. Mbio. 4: e00889-13. PMID 24345744 DOI: 10.1128/mBio.00889-13  0.92
2013 Planet PJ, Narechania A, Hymes SR, Gagliardo C, Huard RC, Whittier S, Della-Latta P, Ratner AJ. Bordetella holmesii: initial genomic analysis of an emerging opportunist. Pathogens and Disease. 67: 132-5. PMID 23620158 DOI: 10.1111/2049-632X.12028  0.92
2013 Planet PJ, Rampersaud R, Hymes SR, Whittier S, Della-Latta PA, Narechania A, Daugherty SC, Santana-Cruz I, Desalle R, Ravel J, Ratner AJ. Genome Sequence of the Human Abscess Isolate Streptococcus intermedius BA1. Genome Announcements. 1. PMID 23405291 DOI: 10.1128/genomeA.00117-12  0.72
2012 Kulkarni R, Antala S, Wang A, Amaral FE, Rampersaud R, Larussa SJ, Planet PJ, Ratner AJ. Cigarette smoke increases Staphylococcus aureus biofilm formation via oxidative stress. Infection and Immunity. 80: 3804-11. PMID 22890993 DOI: 10.1128/IAI.00689-12  0.92
2012 Karched M, Furgang D, Planet PJ, DeSalle R, Fine DH. Genome sequence of Aggregatibacter actinomycetemcomitans RHAA1, isolated from a rhesus macaque, an Old World primate. Journal of Bacteriology. 194: 1275-6. PMID 22328766 DOI: 10.1128/JB.06710-11  0.92
2012 Perez-Cheeks BA, Planet PJ, Sarkar IN, Clock SA, Xu Q, Figurski DH. The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans. Molecular Microbiology. 83: 694-711. PMID 22239271 DOI: 10.1111/j.1365-2958.2011.07955.x  0.92
2012 Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ. Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria. Genome Biology and Evolution. 4: 30-43. PMID 22094860 DOI: 10.1093/gbe/evr121  0.92
2011 Rampersaud R, Planet PJ, Randis TM, Kulkarni R, Aguilar JL, Lehrer RI, Ratner AJ. Inerolysin, a cholesterol-dependent cytolysin produced by Lactobacillus iners. Journal of Bacteriology. 193: 1034-41. PMID 21169489 DOI: 10.1128/JB.00694-10  0.92
2011 Kurt Lienau E, DeSalle R, Allard M, Brown EW, Swofford D, Rosenfeld JA, Sarkar IN, Planet PJ. The mega-matrix tree of life: Using genome-scale horizontal gene transfer and sequence evolution data as information about the vertical history of life Cladistics. 27: 417-427. DOI: 10.1111/j.1096-0031.2010.00337.x  0.92
2010 Bonaventura MP, Lee EK, Desalle R, Planet PJ. A whole-genome phylogeny of the family Pasteurellaceae. Molecular Phylogenetics and Evolution. 54: 950-6. PMID 19686857 DOI: 10.1016/j.ympev.2009.08.010  0.92
2009 Pang PS, Planet PJ, Glenn JS. The evolution of the major hepatitis C genotypes correlates with clinical response to interferon therapy. Plos One. 4: e6579. PMID 19668364 DOI: 10.1371/journal.pone.0006579  0.92
2009 Di Bonaventura MP, DeSalle R, Pop M, Nagarajan N, Figurski DH, Fine DH, Kaplan JB, Planet PJ. Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700. Journal of Bacteriology. 191: 4693-4. PMID 19447908 DOI: 10.1128/JB.00447-09  0.92
2008 Sarkar IN, Planet PJ, Desalle R. caos software for use in character-based DNA barcoding. Molecular Ecology Resources. 8: 1256-9. PMID 21586014 DOI: 10.1111/j.1755-0998.2008.02235.x  0.92
2008 Clock SA, Planet PJ, Perez BA, Figurski DH. Outer membrane components of the Tad (tight adherence) secreton of Aggregatibacter actinomycetemcomitans. Journal of Bacteriology. 190: 980-90. PMID 18055598 DOI: 10.1128/JB.01347-07  0.92
2007 Tomich M, Planet PJ, Figurski DH. The tad locus: postcards from the widespread colonization island. Nature Reviews. Microbiology. 5: 363-75. PMID 17435791 DOI: 10.1038/nrmicro1636  0.92
2006 Perez BA, Planet PJ, Kachlany SC, Tomich M, Fine DH, Figurski DH. Genetic analysis of the requirement for flp-2, tadV, and rcpB in Actinobacillus actinomycetemcomitans biofilm formation. Journal of Bacteriology. 188: 6361-75. PMID 16923904 DOI: 10.1128/JB.00496-06  0.92
2006 Soong G, Muir A, Gomez MI, Waks J, Reddy B, Planet P, Singh PK, Kaneko Y, Kanetko Y, Wolfgang MC, Hsiao YS, Tong L, Prince A. Bacterial neuraminidase facilitates mucosal infection by participating in biofilm production. The Journal of Clinical Investigation. 116: 2297-2305. PMID 16862214 DOI: 10.1172/JCI27920  0.92
2006 Lienau EK, DeSalle R, Rosenfeld JA, Planet PJ. Reciprocal illumination in the gene content tree of life. Systematic Biology. 55: 441-53. PMID 16861208 DOI: 10.1080/10635150600697416  0.92
2006 Planet PJ. Tree disagreement: measuring and testing incongruence in phylogenies. Journal of Biomedical Informatics. 39: 86-102. PMID 16243006 DOI: 10.1016/j.jbi.2005.08.008  0.92
2005 Planet PJ, Sarkar IN. mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests. Bioinformatics (Oxford, England). 21: 4423-4. PMID 16267088 DOI: 10.1093/bioinformatics/bti744  0.92
2004 Rosenfeld JA, Sarkar IN, Planet PJ, Figurski DH, DeSalle R. ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. Bioinformatics (Oxford, England). 20: 3462-5. PMID 15271781 DOI: 10.1093/bioinformatics/bth427  0.92
2003 Schreiner HC, Sinatra K, Kaplan JB, Furgang D, Kachlany SC, Planet PJ, Perez BA, Figurski DH, Fine DH. Tight-adherence genes of Actinobacillus actinomycetemcomitans are required for virulence in a rat model. Proceedings of the National Academy of Sciences of the United States of America. 100: 7295-300. PMID 12756291 DOI: 10.1073/pnas.1237223100  0.92
2003 Planet PJ, Kachlany SC, Fine DH, DeSalle R, Figurski DH. The Widespread Colonization Island of Actinobacillus actinomycetemcomitans. Nature Genetics. 34: 193-8. PMID 12717435 DOI: 10.1038/ng1154  0.92
2002 Sarkar IN, Planet PJ, Bael TE, Stanley SE, Siddall M, DeSalle R, Figurski DH. Characteristic attributes in cancer microarrays. Journal of Biomedical Informatics. 35: 111-22. PMID 12474425 DOI: 10.1016/S1532-0464(02)00504-X  0.92
2002 Sarkar IN, Thornton JW, Planet PJ, Figurski DH, Schierwater B, DeSalle R. An automated phylogenetic key for classifying homeoboxes. Molecular Phylogenetics and Evolution. 24: 388-99. PMID 12220982 DOI: 10.1016/S1055-7903(02)00259-2  0.92
2002 Planet PJ. Reexamining microbial evolution through the lens of horizontal transfer. Exs. 247-303. PMID 11924501  0.92
2002 Pang PS, Jankowsky E, Planet PJ, Pyle AM. The hepatitis C viral NS3 protein is a processive DNA helicase with cofactor enhanced RNA unwinding. The Embo Journal. 21: 1168-76. PMID 11867545 DOI: 10.1093/emboj/21.5.1168  0.92
2001 Kachlany SC, Planet PJ, DeSalle R, Fine DH, Figurski DH. Genes for tight adherence of Actinobacillus actinomycetemcomitans: from plaque to plague to pond scum. Trends in Microbiology. 9: 429-37. PMID 11553455 DOI: 10.1016/S0966-842X(01)02161-8  0.92
2001 Planet PJ, DeSalle R, Siddall M, Bael T, Sarkar IN, Stanley SE. Systematic analysis of DNA microarray data: Ordering and interpreting patterns of gene expression Genome Research. 11: 1149-1155. PMID 11435396 DOI: 10.1101/gr.187601  0.92
2001 Kachlany SC, Planet PJ, Desalle R, Fine DH, Figurski DH, Kaplan JB. flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans. Molecular Microbiology. 40: 542-54. PMID 11359562 DOI: 10.1046/j.1365-2958.2001.02422.x  0.92
2001 Planet PJ, Kachlany SC, DeSalle R, Figurski DH. Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification. Proceedings of the National Academy of Sciences of the United States of America. 98: 2503-8. PMID 11226268 DOI: 10.1073/pnas.051436598  0.92
2000 Kachlany SC, Planet PJ, Bhattacharjee MK, Kollia E, DeSalle R, Fine DH, Figurski DH. Nonspecific adherence by Actinobacillus actinomycetemcomitans requires genes widespread in bacteria and archaea. Journal of Bacteriology. 182: 6169-76. PMID 11029439 DOI: 10.1128/JB.182.21.6169-6176.2000  0.92
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