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Christopher W.V. Hogue - Publications

Affiliations: 
1997-2008 Biochemistry University of Toronto, Toronto, ON, Canada 
 2007-2013 Biol. Sciences National University of Singapore, Singapore, Singapore 
Website:
http://bioimplement.blogspot.com/
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2007 Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, ... ... Hogue C, et al. Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions. Bmc Biology. 5: 44. PMID 17925023 DOI: 10.1186/1741-7007-5-44  0.583
2007 Betel D, Breitkreuz KE, Isserlin R, Dewar-Darch D, Tyers M, Hogue CW. Structure-templated predictions of novel protein interactions from sequence information. Plos Computational Biology. 3: 1783-9. PMID 17892321 DOI: 10.1371/Journal.Pcbi.0030182  0.495
2007 Hogue CW. The other side of staying out of a BIND. Nature Biotechnology. 25: 971. PMID 17846617 DOI: 10.1038/Nbt0907-971A  0.315
2007 Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader GD, Vidal M, ... ... Hogue C, et al. The minimum information required for reporting a molecular interaction experiment (MIMIx). Nature Biotechnology. 25: 894-8. PMID 17687370 DOI: 10.1038/Nbt1324  0.552
2006 Willis RC, Hogue CW. Searching, viewing, and visualizing data in the Biomolecular Interaction Network Database (BIND). Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 8.9. PMID 18428770 DOI: 10.1002/0471250953.bi0809s12  0.32
2006 Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW. Domain-based small molecule binding site annotation. Bmc Bioinformatics. 7: 152. PMID 16545112 DOI: 10.1186/1471-2105-7-152  0.738
2006 Feldman HJ, Snyder KA, Ticoll A, Pintilie G, Hogue CW. A complete small molecule dataset from the protein data bank. Febs Letters. 580: 1649-53. PMID 16494871 DOI: 10.1016/J.Febslet.2006.02.003  0.664
2005 Feldman HJ, Dumontier M, Ling S, Haider N, Hogue CW. CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules. Febs Letters. 579: 4685-91. PMID 16098521 DOI: 10.1016/J.Febslet.2005.07.039  0.707
2005 Dumontier M, Yao R, Feldman HJ, Hogue CW. Armadillo: domain boundary prediction by amino acid composition. Journal of Molecular Biology. 350: 1061-73. PMID 15978619 DOI: 10.1016/J.Jmb.2005.05.037  0.709
2005 Alex AT, Dumontier M, Rose JS, Hogue CW. Hardware-accelerated protein identification for mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 19: 833-7. PMID 15723443 DOI: 10.1002/Rcm.1853  0.56
2005 Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, D'Abreo C, Donaldson I, Dorairajoo D, ... ... Hogue CW, et al. The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Research. 33: D418-24. PMID 15608229 DOI: 10.1093/Nar/Gki051  0.742
2004 Betel D, Isserlin R, Hogue CW. Analysis of domain correlations in yeast protein complexes. Bioinformatics (Oxford, England). 20: i55-62. PMID 15262781 DOI: 10.1093/bioinformatics/bth903  0.322
2004 Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Hogue C, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/Nbt926  0.671
2003 Acchione M, Guillemette JG, Twine SM, Hogue CW, Rajendran B, Szabo AG. Fluorescence based structural analysis of tryptophan analogue-AMP formation in single tryptophan mutants of Bacillus stearothermophilus tryptophanyl-tRNA synthetase. Biochemistry. 42: 14994-5002. PMID 14674776 DOI: 10.1021/Bi0347454  0.719
2003 Donaldson I, Martin J, de Bruijn B, Wolting C, Lay V, Tuekam B, Zhang S, Baskin B, Bader GD, Michalickova K, Pawson T, Hogue CW. PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine. Bmc Bioinformatics. 4: 11. PMID 12689350 DOI: 10.1186/1471-2105-4-11  0.596
2003 Bader GD, Hogue CW. An automated method for finding molecular complexes in large protein interaction networks. Bmc Bioinformatics. 4: 2. PMID 12525261 DOI: 10.1186/1471-2105-4-2  0.558
2003 Bader GD, Betel D, Hogue CW. BIND: the Biomolecular Interaction Network Database. Nucleic Acids Research. 31: 248-50. PMID 12519993 DOI: 10.1093/Nar/Gkg056  0.609
2002 Fields S, Drees B, Hazbun TR, Tucker C, Tong AHY, Evangelista M, Boone C, Nardelli G, Castagnoli L, Zucconi A, Cesareni G, Bader G, Hogue C. Approaches to Analyze Protein Interactions. Thescientificworldjournal. 2: 93-94. PMID 29973818 DOI: 10.1100/Tsw.2002.44  0.467
2002 Dumontier M, Michalickova K, Hogue CW. Species-specific protein sequence and fold optimizations. Bmc Bioinformatics. 3: 39. PMID 12487631 DOI: 10.1186/1471-2105-3-39  0.57
2002 Michalickova K, Bader GD, Dumontier M, Lieu H, Betel D, Isserlin R, Hogue CW. SeqHound: biological sequence and structure database as a platform for bioinformatics research. Bmc Bioinformatics. 3: 32. PMID 12401134 DOI: 10.1186/1471-2105-3-32  0.641
2002 Bader GD, Hogue CW. Analyzing yeast protein-protein interaction data obtained from different sources. Nature Biotechnology. 20: 991-7. PMID 12355115 DOI: 10.1038/Nbt1002-991  0.601
2002 Betel D, Hogue CW. Kangaroo--a pattern-matching program for biological sequences. Bmc Bioinformatics. 3: 20. PMID 12150718 DOI: 10.1186/1471-2105-3-20  0.361
2002 Dumontier M, Hogue CW. NBLAST: a cluster variant of BLAST for NxN comparisons. Bmc Bioinformatics. 3: 13. PMID 12019022 DOI: 10.1186/1471-2105-3-13  0.53
2002 Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, ... ... Hogue CW, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 415: 180-3. PMID 11805837 DOI: 10.1038/415180A  0.584
2002 Feldman HJ, Hogue CW. Probabilistic sampling of protein conformations: new hope for brute force? Proteins. 46: 8-23. PMID 11746699 DOI: 10.1002/Prot.1163  0.672
2002 Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, et al. A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science (New York, N.Y.). 295: 321-4. PMID 11743162 DOI: 10.1126/Science.1064987  0.607
2002 Flora KK, Keeling-Tucker T, Hogue CW, Brennan JD. Screening of antagonists based on induced dissociation of a calmodulin–melittin interaction entrapped in a sol–gel derived matrix Analytica Chimica Acta. 470: 19-28. DOI: 10.1016/S0003-2670(02)00541-X  0.465
2001 Salama JJ, Donaldson I, Hogue CW. Automatic annotation of BIND molecular interactions from three-dimensional structures. Biopolymers. 61: 111-20. PMID 11987160 DOI: 10.1002/1097-0282(2001/2002)61:2<111::Aid-Bip10143>3.0.Co;2-8  0.469
2001 Tong AH, Evangelista M, Parsons AB, Xu H, Bader GD, Pagé N, Robinson M, Raghibizadeh S, Hogue CW, Bussey H, Andrews B, Tyers M, Boone C. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science (New York, N.Y.). 294: 2364-8. PMID 11743205 DOI: 10.1126/Science.1065810  0.478
2001 Salama JJ, Feldman HJ, Hogue CW. VISTRAJ: exploring protein conformational space. Bioinformatics (Oxford, England). 17: 851-2. PMID 11590106 DOI: 10.1093/Bioinformatics/17.9.851  0.647
2001 Bader GD, Donaldson I, Wolting C, Ouellette BF, Pawson T, Hogue CW. BIND--The Biomolecular Interaction Network Database. Nucleic Acids Research. 29: 242-5. PMID 11125103  0.566
2000 Bader GD, Hogue CW. BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics (Oxford, England). 16: 465-77. PMID 10871269 DOI: 10.1093/Bioinformatics/16.5.465  0.615
2000 Feldman HJ, Hogue CW. A fast method to sample real protein conformational space. Proteins. 39: 112-31. PMID 10737933 DOI: 10.1002/(Sici)1097-0134(20000501)39:2<112::Aid-Prot2>3.0.Co;2-B  0.673
1998 Zheng L, Hogue CW, Brennan JD. Effects of metal binding affinity on the chemical and thermal stability of site-directed mutants of rat oncomodulin. Biophysical Chemistry. 71: 157-72. PMID 9648206 DOI: 10.1016/S0301-4622(98)00096-9  0.553
1996 Hogue CW, Doublié S, Xue H, Wong JT, Carter CW, Szabo AG. A concerted tryptophanyl-adenylate-dependent conformational change in Bacillus subtilis tryptophanyl-tRNA synthetase revealed by the fluorescence of Trp92. Journal of Molecular Biology. 260: 446-66. PMID 8757806 DOI: 10.1006/Jmbi.1996.0413  0.608
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