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Pekka Ruusuvuori - Publications

Affiliations: 
Signal Processing Tampere University of Technology, Tampere, Finland 
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Ström P, Kartasalo K, Olsson H, Solorzano L, Delahunt B, Berney DM, Bostwick DG, Evans AJ, Grignon DJ, Humphrey PA, Iczkowski KA, Kench JG, Kristiansen G, van der Kwast TH, Leite KRM, ... ... Ruusuvuori P, et al. Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study. The Lancet. Oncology. PMID 31926806 DOI: 10.1016/S1470-2045(19)30738-7  0.313
2020 Valkonen M, Isola J, Ylinen O, Muhonen V, Saxlin A, Tolonen T, Nykter M, Ruusuvuori P. Cytokeratin-Supervised Deep Learning for Automatic Recognition of Epithelial Cells in Breast Cancers Stained for ER, PR, and Ki-67 Ieee Transactions On Medical Imaging. 39: 534-542. PMID 31398111 DOI: 10.1109/Tmi.2019.2933656  0.363
2019 Eerola SK, Santio NM, Rinne S, Kouvonen P, Corthals GL, Scaravilli M, Scala G, Serra A, Greco D, Ruusuvuori P, Latonen L, Rainio E, Visakorpi T, Koskinen PJ. Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion Cell Communication and Signaling. 17: 1-16. PMID 31730483 DOI: 10.1186/S12964-019-0463-Y  0.321
2019 Liimatainen K, Kananen L, Latonen L, Ruusuvuori P. Iterative unsupervised domain adaptation for generalized cell detection from brightfield z-stacks. Bmc Bioinformatics. 20: 80. PMID 30767778 DOI: 10.1186/S12859-019-2605-Z  0.315
2019 Ruusuvuori P, Kartasalo K, Valkonen M, Valkonen M, Visakorpi T, Nykter M, Latonen L. Abstract 46: 3D reconstruction and quantitative analysis of histology for prostate cancer Cancer Research. 79: 46-46. DOI: 10.1158/1538-7445.Am2019-46  0.384
2018 Kartasalo K, Latonen L, Vihinen J, Visakorpi T, Nykter M, Ruusuvuori P. Comparative analysis of tissue reconstruction algorithms for 3D histology. Bioinformatics. 34: 3013-3021. PMID 29684099 DOI: 10.1093/Bioinformatics/Bty210  0.33
2017 Valkonen M, Kartasalo K, Liimatainen K, Nykter M, Latonen L, Ruusuvuori P. Metastasis detection from whole slide images using local features and random forests. Cytometry Part A. 91: 555-565. PMID 28426134 DOI: 10.1002/Cyto.A.23089  0.402
2017 Valkonen M, Ruusuvuori P, Kartasalo K, Nykter M, Visakorpi T, Latonen L. Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models Scientific Reports. 7: 44831. PMID 28317907 DOI: 10.1038/Srep44831  0.379
2016 Ulman V, Svoboda D, Nykter M, Kozubek M, Ruusuvuori P. Virtual cell imaging: A review on simulation methods employed in image cytometry. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. PMID 27922735 DOI: 10.1002/Cyto.A.23031  0.371
2016 Ruusuvuori P, Valkonen M, Nykter M, Visakorpi T, Latonen L. Feature-based analysis of mouse prostatic intraepithelial neoplasia in histological tissue sections Journal of Pathology Informatics. 7: 5-5. PMID 26955503 DOI: 10.4103/2153-3539.175378  0.366
2015 Hassan SS, Ruusuvuori P, Latonen L, Huttunen H. Flow Cytometry-Based Classification in Cancer Research: A View on Feature Selection Cancer Informatics. 14: 75-85. PMID 27081305 DOI: 10.4137/Cin.S30795  0.302
2015 Annala M, Kivinummi K, Tuominen J, Karakurt S, Granberg K, Latonen L, Ylipää A, Sjöblom L, Ruusuvuori P, Saramäki O, Kaukoniemi KM, Yli-Harja O, Vessella RL, Tammela TL, Zhang W, et al. Recurrent SKIL-activating rearrangements in ETS-negative prostate cancer. Oncotarget. 6: 6235-50. PMID 25749039 DOI: 10.18632/Oncotarget.3359  0.307
2014 Ruusuvuori P, Paavolainen L, Rutanen K, Mäki A, Huttunen H, Marjomäki V. Quantitative analysis of dynamic association in live biological fluorescent samples. Plos One. 9: e94245. PMID 24728133 DOI: 10.1371/Journal.Pone.0094245  0.361
2014 Ruusuvuori P, Lin J, Scott AC, Tan Z, Sorsa S, Kallio A, Nykter M, Yli-Harja O, Shmulevich I, Dudley AM. Quantitative analysis of colony morphology in yeast. Biotechniques. 56: 18-27. PMID 24447135 DOI: 10.2144/000114123  0.364
2013 Farhan M, Ruusuvuori P, Emmenlauer M, Rämö P, Dehio C, Yli-Harja O. Multi-scale Gaussian representation and outline-learning based cell image segmentation. Bmc Bioinformatics. 14: S6. PMID 24267488 DOI: 10.1186/1471-2105-14-S10-S6  0.398
2013 Farhan M, Ruusuvuori P, Emmenlauer M, Rämö P, Yli-Harja O, Dehio C. Graph cut and image intensity-based splitting improves nuclei segmentation in high-content screening Proceedings of Spie. 8655. DOI: 10.1117/12.2003243  0.36
2010 Erkkilä T, Lehmusvaara S, Ruusuvuori P, Visakorpi T, Shmulevich I, Lähdesmäki H. Probabilistic analysis of gene expression measurements from heterogeneous tissues. Bioinformatics (Oxford, England). 26: 2571-7. PMID 20631160 DOI: 10.1093/Bioinformatics/Btq406  0.307
2010 Ruusuvuori P, Aijö T, Chowdhury S, Garmendia-Torres C, Selinummi J, Birbaumer M, Dudley AM, Pelkmans L, Yli-Harja O. Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images. Bmc Bioinformatics. 11: 248. PMID 20465797 DOI: 10.1186/1471-2105-11-248  0.357
2010 Ruusuvuori P, Äijö T, Chowdhury S, Garmendia-Torres C, Selinummi J, Birbaumer M, Dudley AM, Pelkmans L, Yli-Harja O. Research article Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images Bmc Bioinformatics. 11: 248. DOI: 10.3929/Ethz-B-000021654  0.308
2007 Niemistö A, Nykter M, Aho T, Jalovaara H, Marjanen K, Ahdesmäki M, Ruusuvuori P, Tiainen M, Linne ML, Yli-Harja O. Computational methods for estimation of cell cycle phase distributions of yeast cells. Eurasip Journal On Bioinformatics & Systems Biology. 46150. PMID 18354733 DOI: 10.1155/2007/46150  0.335
2007 Lehmussola A, Ruusuvuori P, Selinummi J, Huttunen H, Yli-Harja O. Computational framework for simulating fluorescence microscope images with cell populations. Ieee Transactions On Medical Imaging. 26: 1010-6. PMID 17649914 DOI: 10.1109/Tmi.2007.896925  0.366
2006 Lehmussola A, Ruusuvuori P, Yli-Harja O. Evaluating the performance of microarray segmentation algorithms. Bioinformatics (Oxford, England). 22: 2910-7. PMID 17032673 DOI: 10.1093/Bioinformatics/Btl502  0.313
2005 Ruusuvuori P, Lehmussola A, Yli-Harja O. Learning-based method for spot addressing in microarray images Proceedings of Spie - the International Society For Optical Engineering. 5672: 416-425. DOI: 10.1117/12.596494  0.374
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