Alejandro Reyes, Ph.D. - Publications

Affiliations: 
2013 Biology & Biomedical Sciences (Computational Biology) Washington University, Saint Louis, St. Louis, MO 
Area:
Virology Biology, Microbiology Biology, Bioinformatics Biology

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Salazar-Jaramillo L, de la Cuesta-Zuluaga J, Chica LA, Cadavid M, Ley RE, Reyes A, Escobar JS. Gut microbiome diversity within is negatively associated with human obesity. Msystems. e0062724. PMID 39012154 DOI: 10.1128/msystems.00627-24  0.309
2023 Villabona N, Moran N, Hammer T, Reyes A. Conserved, yet disruption-prone, gut microbiomes in neotropical bumblebees. Msphere. e0013923. PMID 37855643 DOI: 10.1128/msphere.00139-23  0.352
2023 Sutcliffe SG, Reyes A, Maurice CF. Bacteriophages playing nice: Lysogenic bacteriophage replication stable in the human gut microbiota. Iscience. 26: 106007. PMID 36798434 DOI: 10.1016/j.isci.2023.106007  0.383
2021 Chica Cardenas LA, Clavijo V, Vives M, Reyes A. Bacterial meta-analysis of chicken cecal microbiota. Peerj. 9: e10571. PMID 33505795 DOI: 10.7717/peerj.10571  0.305
2020 Botero D, Monk J, Rodríguez Cubillos MJ, Rodríguez Cubillos A, Restrepo M, Bernal-Galeano V, Reyes A, González Barrios A, Palsson BØ, Restrepo S, Bernal A. Genome-Scale Metabolic Model of pv. : An Approach to Elucidate Pathogenicity at the Metabolic Level. Frontiers in Genetics. 11: 837. PMID 32849823 DOI: 10.3389/Fgene.2020.00837  0.335
2020 Reyes A, Vives MJ. Paving the Way to Unveil the Diversity and Evolution of Phage Genomes. Viruses. 12. PMID 32824934 DOI: 10.3390/V12090905  0.419
2020 Pacheco-Montealegre ME, Dávila-Mora LL, Botero-Rute LM, Reyes A, Caro-Quintero A. Fine Resolution Analysis of Microbial Communities Provides Insights Into the Variability of Cocoa Bean Fermentation. Frontiers in Microbiology. 11: 650. PMID 32351482 DOI: 10.3389/Fmicb.2020.00650  0.404
2019 Posada-Perlaza CE, Ramírez-Rojas A, Porras P, Adu-Oppong B, Botero-Coy AM, Hernández F, Anzola JM, Díaz L, Dantas G, Reyes A, Zambrano MM. Bogotá River anthropogenic contamination alters microbial communities and promotes spread of antibiotic resistance genes. Scientific Reports. 9: 11764. PMID 31409850 DOI: 10.1038/S41598-019-48200-6  0.395
2019 Andrade-Martínez JS, Moreno-Gallego JL, Reyes A. Defining a Core Genome for the Herpesvirales and Exploring their Evolutionary Relationship with the Caudovirales. Scientific Reports. 9: 11342. PMID 31383901 DOI: 10.1038/S41598-019-47742-Z  0.369
2019 Moreno-Gallego JL, Chou SP, Di Rienzi SC, Goodrich JK, Spector TD, Bell JT, Youngblut ND, Hewson I, Reyes A, Ley RE. Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins. Cell Host & Microbe. 25: 261-272.e5. PMID 30763537 DOI: 10.1016/J.Chom.2019.01.019  0.395
2018 Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, ... ... Reyes A, et al. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology. PMID 30556814 DOI: 10.1038/Nbt.4306  0.351
2018 Castro-Mejía JL, Deng L, Vogensen FK, Reyes A, Nielsen DS. Extraction and Purification of Viruses from Fecal Samples for Metagenome and Morphology Analyses. Methods in Molecular Biology (Clifton, N.J.). 1838: 49-57. PMID 30128989 DOI: 10.1007/978-1-4939-8682-8_5  0.411
2018 Restrepo L, Reyes A, Bajaña L, Betancourt I, Bayot B. Draft Genome Sequence of a White Spot Syndrome Virus Isolate Obtained in Ecuador. Genome Announcements. 6. PMID 29954906 DOI: 10.1128/Genomea.00605-18  0.327
2018 Gonzalez-Zapata FL, Bongaerts P, Ramírez-Portilla C, Adu-Oppong B, Walljasper G, Reyes A, Sanchez JA. Holobiont diversity in a reef-building coral over its entire depth range in the mesophotic zone Frontiers in Marine Science. 5. DOI: 10.3389/Fmars.2018.00029  0.373
2017 Borbón-García A, Reyes A, Vives-Flórez M, Caballero S. Captivity Shapes the Gut Microbiota of Andean Bears: Insights into Health Surveillance. Frontiers in Microbiology. 8: 1316. PMID 28751883 DOI: 10.3389/Fmicb.2017.01316  0.446
2016 Rodriguez-Castaño GP, Caro-Quintero A, Reyes A, Lizcano F. Advances in Gut Microbiome Research, Opening New Strategies to Cope with a Western Lifestyle. Frontiers in Genetics. 7: 224. PMID 28119734 DOI: 10.3389/Fgene.2016.00224  0.313
2016 Alves JM, de Oliveira AL, Sandberg TO, Moreno-Gallego JL, de Toledo MA, de Moura EM, Oliveira LS, Durham AM, Mehnert DU, Zanotto PM, Reyes A, Gruber A. GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data. Frontiers in Microbiology. 7: 269. PMID 26973638 DOI: 10.3389/Fmicb.2016.00269  0.355
2015 Reyes A, Blanton LV, Cao S, Zhao G, Manary M, Trehan I, Smith MI, Wang D, Virgin HW, Rohwer F, Gordon JI. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition. Proceedings of the National Academy of Sciences of the United States of America. 112: 11941-6. PMID 26351661 DOI: 10.1073/Pnas.1514285112  0.542
2014 Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, et al. Bacteria from diverse habitats colonize and compete in the mouse gut. Cell. 159: 253-66. PMID 25284151 DOI: 10.1016/J.Cell.2014.09.008  0.684
2013 Reyes A, Wu M, McNulty NP, Rohwer FL, Gordon JI. Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut. Proceedings of the National Academy of Sciences of the United States of America. 110: 20236-41. PMID 24259713 DOI: 10.1073/Pnas.1319470110  0.709
2013 Lim ES, Reyes A, Antonio M, Saha D, Ikumapayi UN, Adeyemi M, Stine OC, Skelton R, Brennan DC, Mkakosya RS, Manary MJ, Gordon JI, Wang D. Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing. Virology. 436: 295-303. PMID 23276405 DOI: 10.1016/J.Virol.2012.12.005  0.484
2013 Lim ES, Reyes A, Antonio M, Saha D, Ikumapayi UN, Adeyemi M, Stine OC, Skelton R, Brennan DC, Mkakosya RS, Manary MJ, Gordon JI, Wang D. Corrigendum to "Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing" [Virology 436 (2) (2013) 295-303] Virology. 439: 163-164. DOI: 10.1016/J.Virol.2013.01.016  0.422
2012 Forsberg KJ, Reyes A, Wang B, Selleck EM, Sommer MO, Dantas G. The shared antibiotic resistome of soil bacteria and human pathogens. Science (New York, N.Y.). 337: 1107-11. PMID 22936781 DOI: 10.1126/Science.1220761  0.367
2012 Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI. Going viral: next-generation sequencing applied to phage populations in the human gut. Nature Reviews. Microbiology. 10: 607-17. PMID 22864264 DOI: 10.1038/Nrmicro2853  0.555
2012 Siebrasse EA, Reyes A, Lim ES, Zhao G, Mkakosya RS, Manary MJ, Gordon JI, Wang D. Identification of MW polyomavirus, a novel polyomavirus in human stool. Journal of Virology. 86: 10321-6. PMID 22740408 DOI: 10.1128/Jvi.01210-12  0.525
2011 Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice Proceedings of the National Academy of Sciences of the United States of America. 108: 6252-6257. PMID 21436049 DOI: 10.1073/Pnas.1102938108  0.649
2010 Reyes A, Haynes M, Hanson N, Angly FE, Heath AC, Rohwer F, Gordon JI. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 466: 334-8. PMID 20631792 DOI: 10.1038/Nature09199  0.595
2009 García JC, Reyes A, Salazar M, Granja CB. Differential gene expression in White Spot Syndrome Virus (WSSV)-infected naïve and previously challenged Pacific white shrimp Penaeus (Litopenaeus) vannamei Aquaculture. 289: 253-258. DOI: 10.1016/J.Aquaculture.2009.01.020  0.308
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