Jeffrey Gordon - Publications

Washington University, Saint Louis, St. Louis, MO 
Molecular Biology, Microbiology Biology

173 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Patnode ML, Beller ZW, Han ND, Cheng J, Peters SL, Terrapon N, Henrissat B, Le Gall S, Saulnier L, Hayashi DK, Meynier A, Vinoy S, Giannone RJ, Hettich RL, Gordon JI. Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans. Cell. 179: 59-73.e13. PMID 31539500 DOI: 10.1016/j.cell.2019.08.011  0.4
2019 Gehrig JL, Venkatesh S, Chang HW, Hibberd MC, Kung VL, Cheng J, Chen RY, Subramanian S, Cowardin CA, Meier MF, O'Donnell D, Talcott M, Spears LD, Semenkovich CF, Henrissat B, ... ... Gordon JI, et al. Effects of microbiota-directed foods in gnotobiotic animals and undernourished children. Science (New York, N.Y.). 365. PMID 31296738 DOI: 10.1126/science.aau4732  0.4
2019 Cowardin CA, Ahern PP, Kung VL, Hibberd MC, Cheng J, Guruge JL, Sundaresan V, Head RD, Barile D, Mills DA, Barratt MJ, Huq S, Ahmed T, Gordon JI. Mechanisms by which sialylated milk oligosaccharides impact bone biology in a gnotobiotic mouse model of infant undernutrition. Proceedings of the National Academy of Sciences of the United States of America. PMID 31138692 DOI: 10.1073/pnas.1821770116  0.44
2019 Jang HS, Shah NM, Du AY, Dailey ZZ, Pehrsson EC, Godoy PM, Zhang D, Li D, Xing X, Kim S, O'Donnell D, Gordon JI, Wang T. Author Correction: Transposable elements drive widespread expression of oncogenes in human cancers. Nature Genetics. PMID 30992544 DOI: 10.1038/s41588-019-0416-9  0.32
2019 Jang HS, Shah NM, Du AY, Dailey ZZ, Pehrsson EC, Godoy PM, Zhang D, Li D, Xing X, Kim S, O'Donnell D, Gordon JI, Wang T. Transposable elements drive widespread expression of oncogenes in human cancers. Nature Genetics. 51: 611-617. PMID 30926969 DOI: 10.1038/s41588-019-0373-3  0.32
2018 An J, Wang L, Patnode ML, Ridaura VK, Haldeman JM, Stevens RD, Ilkayeva O, Bain JR, Muehlbauer MJ, Glynn EL, Thomas S, Muoio D, Summers SA, Vath JE, Hughes TE, ... Gordon JI, et al. Physiological mechanisms of sustained fumagillin-induced weight loss. Jci Insight. 3. PMID 29515039 DOI: 10.1172/jci.insight.99453  0.44
2017 Mark Welch JL, Hasegawa Y, McNulty NP, Gordon JI, Borisy GG. Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice. Proceedings of the National Academy of Sciences of the United States of America. 114: E9105-E9114. PMID 29073107 DOI: 10.1073/pnas.1711596114  0.44
2017 Cervantes-Barragan L, Chai JN, Tianero MD, DiLuccia B, Ahern PP, Merriman J, Cortez VS, Caparon MG, Donia MS, Gilfillan S, Cella M, Gordon JI, Hsieh CS, Colonna M. Lactobacillus reuteri induces gut intraepithelial CD4(+)CD8αα(+) T cells. Science (New York, N.Y.). PMID 28775213 DOI: 10.1126/science.aah5825  0.32
2017 Spaulding CN, Klein RD, Ruer S, Kau AL, Schreiber HL, Cusumano ZT, Dodson KW, Pinkner JS, Fremont DH, Janetka JW, Remaut H, Gordon JI, Hultgren SJ. Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist. Nature. PMID 28614296 DOI: 10.1038/nature22972  0.56
2017 Hibberd MC, Wu M, Rodionov DA, Li X, Cheng J, Griffin NW, Barratt MJ, Giannone RJ, Hettich RL, Osterman AL, Gordon JI. The effects of micronutrient deficiencies on bacterial species from the human gut microbiota. Science Translational Medicine. 9. PMID 28515336 DOI: 10.1126/scitranslmed.aal4069  0.4
2016 Griffin NW, Ahern PP, Cheng J, Heath AC, Ilkayeva O, Newgard CB, Fontana L, Gordon JI. Prior Dietary Practices and Connections to a Human Gut Microbial Metacommunity Alter Responses to Diet Interventions. Cell Host & Microbe. PMID 28041931 DOI: 10.1016/j.chom.2016.12.006  0.32
2016 Semenkovich NP, Planer JD, Ahern PP, Griffin NW, Lin CY, Gordon JI. Impact of the gut microbiota on enhancer accessibility in gut intraepithelial lymphocytes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27911843 DOI: 10.1073/pnas.1617793113  0.32
2016 Wagner VE, Dey N, Guruge J, Hsiao A, Ahern PP, Semenkovich NP, Blanton LV, Cheng J, Griffin N, Stappenbeck TS, Ilkayeva O, Newgard CB, Petri W, Haque R, Ahmed T, ... Gordon JI, et al. Effects of a gut pathobiont in a gnotobiotic mouse model of childhood undernutrition. Science Translational Medicine. 8: 366ra164. PMID 27881825 DOI: 10.1126/scitranslmed.aah4669  0.36
2016 Charbonneau MR, Blanton LV, DiGiulio DB, Relman DA, Lebrilla CB, Mills DA, Gordon JI. A microbial perspective of human developmental biology. Nature. 535: 48-55. PMID 27383979 DOI: 10.1038/nature18845  1
2016 Blanton LV, Barratt MJ, Charbonneau MR, Ahmed T, Gordon JI. Childhood undernutrition, the gut microbiota, and microbiota-directed therapeutics. Science (New York, N.Y.). 352: 1533. PMID 27339978 DOI: 10.1126/science.aad9359  1
2016 Planer JD, Peng Y, Kau AL, Blanton LV, Ndao IM, Tarr PI, Warner BB, Gordon JI. Development of the gut microbiota and mucosal IgA responses in twins and gnotobiotic mice. Nature. 534: 263-6. PMID 27279225 DOI: 10.1038/nature17940  1
2016 Blanton LV, Charbonneau MR, Salih T, Barratt MJ, Venkatesh S, Ilkaveya O, Subramanian S, Manary MJ, Trehan I, Jorgensen JM, Fan YM, Henrissat B, Leyn SA, Rodionov DA, Osterman AL, ... ... Gordon JI, et al. Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children. Science (New York, N.Y.). 351. PMID 26912898 DOI: 10.1126/science.aad3311  1
2016 Charbonneau MR, O'Donnell D, Blanton LV, Totten SM, Davis JC, Barratt MJ, Cheng J, Guruge J, Talcott M, Bain JR, Muehlbauer MJ, Ilkayeva O, Wu C, Struckmeyer T, Barile D, ... ... Gordon JI, et al. Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition. Cell. PMID 26898329 DOI: 10.1016/j.cell.2016.01.024  1
2015 Goyal MS, Venkatesh S, Milbrandt J, Gordon JI, Raichle ME. Feeding the brain and nurturing the mind: Linking nutrition and the gut microbiota to brain development. Proceedings of the National Academy of Sciences of the United States of America. 112: 14105-14112. PMID 26578751 DOI: 10.1073/pnas.1511465112  1
2015 Wu M, McNulty NP, Rodionov DA, Khoroshkin MS, Griffin NW, Cheng J, Latreille P, Kerstetter RA, Terrapon N, Henrissat B, Osterman AL, Gordon JI. Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides. Science (New York, N.Y.). 350: aac5992. PMID 26430127 DOI: 10.1126/science.aac5992  1
2015 Dey N, Wagner VE, Blanton LV, Cheng J, Fontana L, Haque R, Ahmed T, Gordon JI. Regulators of Gut Motility Revealed by a Gnotobiotic Model of Diet-Microbiome Interactions Related to Travel. Cell. 163: 95-107. PMID 26406373 DOI: 10.1016/j.cell.2015.08.059  1
2015 Reyes A, Blanton LV, Cao S, Zhao G, Manary M, Trehan I, Smith MI, Wang D, Virgin HW, Rohwer F, Gordon JI. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition. Proceedings of the National Academy of Sciences of the United States of America. 112: 11941-6. PMID 26351661 DOI: 10.1073/pnas.1514285112  1
2015 Subramanian S, Blanton LV, Frese SA, Charbonneau M, Mills DA, Gordon JI. Cultivating healthy growth and nutrition through the gut microbiota. Cell. 161: 36-48. PMID 25815983 DOI: 10.1016/j.cell.2015.03.013  1
2015 Peterson DA, Planer JD, Guruge JL, Xue L, Downey-Virgin W, Goodman AL, Seedorf H, Gordon JI. Characterizing the interactions between a naturally primed immunoglobulin A and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice. The Journal of Biological Chemistry. 290: 12630-49. PMID 25795776 DOI: 10.1074/jbc.M114.633800  1
2015 Kau AL, Planer JD, Liu J, Rao S, Yatsunenko T, Trehan I, Manary MJ, Liu TC, Stappenbeck TS, Maleta KM, Ashorn P, Dewey KG, Houpt ER, Hsieh CS, Gordon JI. Functional characterization of IgA-targeted bacterial taxa from undernourished Malawian children that produce diet-dependent enteropathy. Science Translational Medicine. 7: 276ra24. PMID 25717097 DOI: 10.1126/scitranslmed.aaa4877  0.4
2015 Rakoff-Nahoum S, Kong Y, Kleinstein SH, Subramanian S, Ahern PP, Gordon JI, Medzhitov R. Analysis of gene-environment interactions in postnatal development of the mammalian intestine. Proceedings of the National Academy of Sciences of the United States of America. 112: 1929-36. PMID 25691701 DOI: 10.1073/pnas.1424886112  1
2015 Waldor MK, Tyson G, Borenstein E, Ochman H, Moeller A, Finlay BB, Kong HH, Gordon JI, Nelson KE, Dabbagh K, Smith H. Where next for microbiome research? Plos Biology. 13: e1002050. PMID 25602283 DOI: 10.1371/journal.pbio.1002050  1
2015 Faith JJ, Colombel JF, Gordon JI. Identifying strains that contribute to complex diseases through the study of microbial inheritance. Proceedings of the National Academy of Sciences of the United States of America. 112: 633-40. PMID 25576328 DOI: 10.1073/pnas.1418781112  1
2014 Horton MW, Bodenhausen N, Beilsmith K, Meng D, Muegge BD, Subramanian S, Vetter MM, Vilhjálmsson BJ, Nordborg M, Gordon JI, Bergelson J. Genome-wide association study of Arabidopsis thaliana leaf microbial community. Nature Communications. 5: 5320. PMID 25382143 DOI: 10.1038/ncomms6320  1
2014 Seedorf H, Griffin NW, Ridaura VK, Reyes A, Cheng J, Rey FE, Smith MI, Simon GM, Scheffrahn RH, Woebken D, Spormann AM, Van Treuren W, Ursell LK, Pirrung M, Robbins-Pianka A, ... ... Gordon JI, et al. Bacteria from diverse habitats colonize and compete in the mouse gut. Cell. 159: 253-66. PMID 25284151 DOI: 10.1016/j.cell.2014.09.008  1
2014 Hsiao A, Ahmed AM, Subramanian S, Griffin NW, Drewry LL, Petri WA, Haque R, Ahmed T, Gordon JI. Members of the human gut microbiota involved in recovery from Vibrio cholerae infection. Nature. 515: 423-6. PMID 25231861 DOI: 10.1038/nature13738  1
2014 Perry JS, Lio CW, Kau AL, Nutsch K, Yang Z, Gordon JI, Murphy KM, Hsieh CS. Distinct contributions of Aire and antigen-presenting-cell subsets to the generation of self-tolerance in the thymus. Immunity. 41: 414-26. PMID 25220213 DOI: 10.1016/j.immuni.2014.08.007  1
2014 Ahmed T, Auble D, Berkley JA, Black R, Ahern PP, Hossain M, Hsieh A, Ireen S, Arabi M, Gordon JI. An evolving perspective about the origins of childhood undernutrition and nutritional interventions that includes the gut microbiome. Annals of the New York Academy of Sciences. 1332: 22-38. PMID 25118072 DOI: 10.1111/nyas.12487  1
2014 Ahern PP, Faith JJ, Gordon JI. Mining the human gut microbiota for effector strains that shape the immune system. Immunity. 40: 815-23. PMID 24950201 DOI: 10.1016/j.immuni.2014.05.012  1
2014 Subramanian S, Huq S, Yatsunenko T, Haque R, Mahfuz M, Alam MA, Benezra A, DeStefano J, Meier MF, Muegge BD, Barratt MJ, VanArendonk LG, Zhang Q, Province MA, Petri WA, ... ... Gordon JI, et al. Persistent gut microbiota immaturity in malnourished Bangladeshi children. Nature. 510: 417-21. PMID 24896187 DOI: 10.1038/nature13421  1
2014 Werner JJ, Garcia ML, Perkins SD, Yarasheski KE, Smith SR, Muegge BD, Stadermann FJ, DeRito CM, Floss C, Madsen EL, Gordon JI, Angenent LT. Microbial community dynamics and stability during an ammonia-induced shift to syntrophic acetate oxidation. Applied and Environmental Microbiology. 80: 3375-83. PMID 24657858 DOI: 10.1128/AEM.00166-14  1
2014 Faith JJ, Ahern PP, Ridaura VK, Cheng J, Gordon JI. Identifying gut microbe-host phenotype relationships using combinatorial communities in gnotobiotic mice. Science Translational Medicine. 6: 220ra11. PMID 24452263 DOI: 10.1126/scitranslmed.3008051  1
2014 Hecht GA, Blaser MJ, Gordon J, Kaplan LM, Knight R, Laine L, Peek R, Sanders ME, Sartor B, Wu GD, Yang VW. What is the value of a food and drug administration investigational new drug application for fecal microbiota transplantation to treat Clostridium difficile Infection? Clinical Gastroenterology and Hepatology : the Official Clinical Practice Journal of the American Gastroenterological Association. 12: 289-91. PMID 24148361 DOI: 10.1016/j.cgh.2013.10.009  1
2014 TerAvest MA, He Z, Rosenbaum MA, Martens EC, Cotta MA, Gordon JI, Angenent LT. Regulated expression of polysaccharide utilization and capsular biosynthesis loci in biofilm and planktonic Bacteroides thetaiotaomicron during growth in chemostats. Biotechnology and Bioengineering. 111: 165-73. PMID 23996813 DOI: 10.1002/bit.24994  0.32
2013 Reyes A, Wu M, McNulty NP, Rohwer FL, Gordon JI. Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut. Proceedings of the National Academy of Sciences of the United States of America. 110: 20236-41. PMID 24259713 DOI: 10.1073/pnas.1319470110  1
2013 Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL. Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota. Proceedings of the National Academy of Sciences of the United States of America. 110: 17059-64. PMID 24062455 DOI: 10.1073/pnas.1306070110  1
2013 Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, ... ... Gordon JI, et al. Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science (New York, N.Y.). 341: 1241214. PMID 24009397 DOI: 10.1126/science.1241214  1
2013 McNulty NP, Wu M, Erickson AR, Pan C, Erickson BK, Martens EC, Pudlo NA, Muegge BD, Henrissat B, Hettich RL, Gordon JI. Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome. Plos Biology. 11: e1001637. PMID 23976882 DOI: 10.1371/journal.pbio.1001637  1
2013 Rey FE, Gonzalez MD, Cheng J, Wu M, Ahern PP, Gordon JI. Metabolic niche of a prominent sulfate-reducing human gut bacterium. Proceedings of the National Academy of Sciences of the United States of America. 110: 13582-7. PMID 23898195 DOI: 10.1073/pnas.1312524110  1
2013 Lozupone CA, Stombaugh J, Gonzalez A, Ackermann G, Wendel D, Vázquez-Baeza Y, Jansson JK, Gordon JI, Knight R. Meta-analyses of studies of the human microbiota. Genome Research. 23: 1704-14. PMID 23861384 DOI: 10.1101/gr.151803.112  0.44
2013 Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, Clemente JC, Knight R, Heath AC, Leibel RL, Rosenbaum M, Gordon JI. The long-term stability of the human gut microbiota. Science (New York, N.Y.). 341: 1237439. PMID 23828941 DOI: 10.1126/science.1237439  1
2013 El Kaoutari A, Armougom F, Gordon JI, Raoult D, Henrissat B. The abundance and variety of carbohydrate-active enzymes in the human gut microbiota. Nature Reviews. Microbiology. 11: 497-504. PMID 23748339 DOI: 10.1038/nrmicro3050  0.4
2013 Yockey LJ, Demehri S, Turkoz M, Turkoz A, Ahern PP, Jassim O, Manivasagam S, Kearney JF, Gordon JI, Kopan R. The absence of a microbiota enhances TSLP expression in mice with defective skin barrier but does not affect the severity of their allergic inflammation. The Journal of Investigative Dermatology. 133: 2714-21. PMID 23698100 DOI: 10.1038/jid.2013.228  1
2013 Chen SL, Wu M, Henderson JP, Hooton TM, Hibbing ME, Hultgren SJ, Gordon JI. Genomic diversity and fitness of E. coli strains recovered from the intestinal and urinary tracts of women with recurrent urinary tract infection. Science Translational Medicine. 5: 184ra60. PMID 23658245 DOI: 10.1126/scitranslmed.3005497  1
2013 Song SJ, Lauber C, Costello EK, Lozupone CA, Humphrey G, Berg-Lyons D, Caporaso JG, Knights D, Clemente JC, Nakielny S, Gordon JI, Fierer N, Knight R. Cohabiting family members share microbiota with one another and with their dogs. Elife. 2: e00458. PMID 23599893 DOI: 10.7554/eLife.00458  1
2013 Cozen W, Yu G, Gail MH, Ridaura VK, Nathwani BN, Hwang AE, Hamilton AS, Mack TM, Gordon JI, Goedert JJ. Fecal microbiota diversity in survivors of adolescent/young adult Hodgkin lymphoma: a study of twins. British Journal of Cancer. 108: 1163-7. PMID 23443674 DOI: 10.1038/bjc.2013.60  1
2013 Kittelmann S, Seedorf H, Walters WA, Clemente JC, Knight R, Gordon JI, Janssen PH. Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities. Plos One. 8: e47879. PMID 23408926 DOI: 10.1371/journal.pone.0047879  1
2013 Pluznick JL, Protzko RJ, Gevorgyan H, Peterlin Z, Sipos A, Han J, Brunet I, Wan LX, Rey F, Wang T, Firestein SJ, Yanagisawa M, Gordon JI, Eichmann A, Peti-Peterdi J, et al. Olfactory receptor responding to gut microbiota-derived signals plays a role in renin secretion and blood pressure regulation. Proceedings of the National Academy of Sciences of the United States of America. 110: 4410-5. PMID 23401498 DOI: 10.1073/pnas.1215927110  1
2013 Smith MI, Yatsunenko T, Manary MJ, Trehan I, Mkakosya R, Cheng J, Kau AL, Rich SS, Concannon P, Mychaleckyj JC, Liu J, Houpt E, Li JV, Holmes E, Nicholson J, ... ... Gordon JI, et al. Gut microbiomes of Malawian twin pairs discordant for kwashiorkor. Science (New York, N.Y.). 339: 548-54. PMID 23363771 DOI: 10.1126/science.1229000  1
2013 Lim ES, Reyes A, Antonio M, Saha D, Ikumapayi UN, Adeyemi M, Stine OC, Skelton R, Brennan DC, Mkakosya RS, Manary MJ, Gordon JI, Wang D. Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing. Virology. 436: 295-303. PMID 23276405 DOI: 10.1016/j.virol.2012.12.005  1
2013 Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods. 10: 57-9. PMID 23202435 DOI: 10.1038/nmeth.2276  1
2012 Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. Diversity, stability and resilience of the human gut microbiota. Nature. 489: 220-30. PMID 22972295 DOI: 10.1038/nature11550  0.44
2012 Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI. Going viral: next-generation sequencing applied to phage populations in the human gut. Nature Reviews. Microbiology. 10: 607-17. PMID 22864264 DOI: 10.1038/nrmicro2853  1
2012 Siebrasse EA, Reyes A, Lim ES, Zhao G, Mkakosya RS, Manary MJ, Gordon JI, Wang D. Identification of MW polyomavirus, a novel polyomavirus in human stool. Journal of Virology. 86: 10321-6. PMID 22740408 DOI: 10.1128/JVI.01210-12  1
2012 Simon GM, Cheng J, Gordon JI. Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice. Proceedings of the National Academy of Sciences of the United States of America. 109: 11133-8. PMID 22733758 DOI: 10.1073/pnas.1208669109  1
2012 Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, ... ... Gordon JI, et al. Human gut microbiome viewed across age and geography. Nature. 486: 222-7. PMID 22699611 DOI: 10.1038/nature11053  1
2012 Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA. Unlocking the potential of metagenomics through replicated experimental design. Nature Biotechnology. 30: 513-20. PMID 22678395 DOI: 10.1038/nbt.2235  1
2012 Gordon JI, Dewey KG, Mills DA, Medzhitov RM. The human gut microbiota and undernutrition. Science Translational Medicine. 4: 137ps12. PMID 22674549 DOI: 10.1126/scitranslmed.3004347  1
2012 Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R. Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Research. 22: 1974-84. PMID 22665442 DOI: 10.1101/gr.138198.112  1
2012 Benezra A, DeStefano J, Gordon JI. Anthropology of microbes. Proceedings of the National Academy of Sciences of the United States of America. 109: 6378-81. PMID 22460792 DOI: 10.1073/pnas.1200515109  1
2012 Wei X, Yang Z, Rey FE, Ridaura VK, Davidson NO, Gordon JI, Semenkovich CF. Fatty acid synthase modulates intestinal barrier function through palmitoylation of mucin 2. Cell Host & Microbe. 11: 140-52. PMID 22341463 DOI: 10.1016/j.chom.2011.12.006  1
2012 Henao-Mejia J, Elinav E, Jin C, Hao L, Mehal WZ, Strowig T, Thaiss CA, Kau AL, Eisenbarth SC, Jurczak MJ, Camporez JP, Shulman GI, Gordon JI, Hoffman HM, Flavell RA. Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity. Nature. 482: 179-85. PMID 22297845 DOI: 10.1038/nature10809  1
2011 Martens EC, Lowe EC, Chiang H, Pudlo NA, Wu M, McNulty NP, Abbott DW, Henrissat B, Gilbert HJ, Bolam DN, Gordon JI. Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. Plos Biology. 9: e1001221. PMID 22205877 DOI: 10.1371/journal.pbio.1001221  1
2011 Goodman AL, Wu M, Gordon JI. Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries Nature Protocols. 6: 1969-1980. PMID 22094732 DOI: 10.1038/nprot.2011.417  1
2011 McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, ... ... Gordon JI, et al. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Science Translational Medicine. 3: 106ra106. PMID 22030749 DOI: 10.1126/scitranslmed.3002701  1
2011 Kau AL, Ahern PP, Griffin NW, Goodman AL, Gordon JI. Human nutrition, the gut microbiome and the immune system. Nature. 474: 327-36. PMID 21677749 DOI: 10.1038/nature10213  1
2011 Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R. Moving pictures of the human microbiome. Genome Biology. 12: R50. PMID 21624126 DOI: 10.1186/gb-2011-12-5-r50  1
2011 Muegge BD, Kuczynski J, Knights D, Clemente JC, González A, Fontana L, Henrissat B, Knight R, Gordon JI. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans Science. 332: 970-974. PMID 21596990 DOI: 10.1126/science.1198719  1
2011 Faith JJ, McNulty NP, Rey FE, Gordon JI. Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science (New York, N.Y.). 333: 101-4. PMID 21596954 DOI: 10.1126/science.1206025  1
2011 Elinav E, Strowig T, Kau AL, Henao-Mejia J, Thaiss CA, Booth CJ, Peaper DR, Bertin J, Eisenbarth SC, Gordon JI, Flavell RA. NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis. Cell. 145: 745-57. PMID 21565393 DOI: 10.1016/j.cell.2011.04.022  1
2011 Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, ... ... Gordon JI, et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29: 415-20. PMID 21552244 DOI: 10.1038/nbt.1823  1
2011 Jumpertz R, Le DS, Turnbaugh PJ, Trinidad C, Bogardus C, Gordon JI, Krakoff J. Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. The American Journal of Clinical Nutrition. 94: 58-65. PMID 21543530 DOI: 10.3945/ajcn.110.010132  1
2011 Benjdia A, Martens EC, Gordon JI, Berteau O. Sulfatases and a radical S-adenosyl-L-methionine (AdoMet) enzyme are key for mucosal foraging and fitness of the prominent human gut symbiont, Bacteroides thetaiotaomicron. The Journal of Biological Chemistry. 286: 25973-82. PMID 21507958 DOI: 10.1074/jbc.M111.228841  0.32
2011 Gonzalez A, Stombaugh J, Lozupone C, Turnbaugh PJ, Gordon JI, Knight R. The mind-body-microbial continuum. Dialogues in Clinical Neuroscience. 13: 55-62. PMID 21485746  1
2011 Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice Proceedings of the National Academy of Sciences of the United States of America. 108: 6252-6257. PMID 21436049 DOI: 10.1073/pnas.1102938108  1
2011 Hansen EE, Lozupone CA, Rey FE, Wu M, Guruge JL, Narra A, Goodfellow J, Zaneveld JR, McDonald DT, Goodrich JA, Heath AC, Knight R, Gordon JI. Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins. Proceedings of the National Academy of Sciences of the United States of America. 108: 4599-606. PMID 21317366 DOI: 10.1073/pnas.1000071108  1
2010 Turnbaugh PJ, Henrissat B, Gordon JI. Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1261-4. PMID 20944220 DOI: 10.1107/S1744309110029088  1
2010 Garrett WS, Gallini CA, Yatsunenko T, Michaud M, DuBois A, Delaney ML, Punit S, Karlsson M, Bry L, Glickman JN, Gordon JI, Onderdonk AB, Glimcher LH. Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis. Cell Host & Microbe. 8: 292-300. PMID 20833380 DOI: 10.1016/j.chom.2010.08.004  1
2010 Goodman AL, Gordon JI. Our unindicted coconspirators: Human metabolism from a microbial perspective Cell Metabolism. 12: 111-116. PMID 20674856 DOI: 10.1016/j.cmet.2010.07.001  1
2010 Faith JJ, Rey FE, O'Donnell D, Karlsson M, McNulty NP, Kallstrom G, Goodman AL, Gordon JI. Creating and characterizing communities of human gut microbes in gnotobiotic mice Isme Journal. 4: 1094-1098. PMID 20664551 DOI: 10.1038/ismej.2010.110  1
2010 Reyes A, Haynes M, Hanson N, Angly FE, Heath AC, Rohwer F, Gordon JI. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 466: 334-8. PMID 20631792 DOI: 10.1038/nature09199  1
2010 Costello EK, Gordon JI, Secor SM, Knight R. Postprandial remodeling of the gut microbiota in Burmese pythons. The Isme Journal. 4: 1375-85. PMID 20520652 DOI: 10.1038/ismej.2010.71  0.44
2010 Rey FE, Faith JJ, Bain J, Muehlbauer MJ, Stevens RD, Newgard CB, Gordon JI. Dissecting the in vivo metabolic potential of two human gut acetogens. The Journal of Biological Chemistry. 285: 22082-90. PMID 20444704 DOI: 10.1074/jbc.M110.117713  1
2010 Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R. Direct sequencing of the human microbiome readily reveals community differences. Genome Biology. 11: 210. PMID 20441597 DOI: 10.1186/gb-2010-11-5-210  1
2010 Lauber CL, Zhou N, Gordon JI, Knight R, Fierer N. Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples. Fems Microbiology Letters. 307: 80-6. PMID 20412303 DOI: 10.1111/j.1574-6968.2010.01965.x  1
2010 Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Methods. 7: 335-6. PMID 20383131 DOI: 10.1038/nmeth.f.303  1
2010 Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, Gordon JI. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proceedings of the National Academy of Sciences of the United States of America. 107: 7503-8. PMID 20363958 DOI: 10.1073/pnas.1002355107  1
2010 Garrett WS, Gordon JI, Glimcher LH. Homeostasis and inflammation in the intestine. Cell. 140: 859-70. PMID 20303876 DOI: 10.1016/j.cell.2010.01.023  1
2010 Littlepage LE, Sternlicht MD, Rougier N, Phillips J, Gallo E, Yu Y, Williams K, Brenot A, Gordon JI, Werb Z. Matrix metalloproteinases contribute distinct roles in neuroendocrine prostate carcinogenesis, metastasis, and angiogenesis progression. Cancer Research. 70: 2224-34. PMID 20215503 DOI: 10.1158/0008-5472.CAN-09-3515  1
2010 Zaneveld JR, Lozupone C, Gordon JI, Knight R. Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives. Nucleic Acids Research. 38: 3869-79. PMID 20197316 DOI: 10.1093/nar/gkq066  1
2009 Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Science Translational Medicine. 1: 6ra14. PMID 20368178 DOI: 10.1126/scitranslmed.3000322  1
2009 Chen SL, Hung CS, Pinkner JS, Walker JN, Cusumano CK, Li Z, Bouckaert J, Gordon JI, Hultgren SJ. Positive selection identifies an in vivo role for FimH during urinary tract infection in addition to mannose binding. Proceedings of the National Academy of Sciences of the United States of America. 106: 22439-44. PMID 20018753 DOI: 10.1073/pnas.0902179106  1
2009 Pohl MA, Romero-Gallo J, Guruge JL, Tse DB, Gordon JI, Blaser MJ. Host-dependent Lewis (Le) antigen expression in Helicobacter pylori cells recovered from Leb-transgenic mice. The Journal of Experimental Medicine. 206: 3061-72. PMID 20008521 DOI: 10.1084/jem.20090683  0.44
2009 Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. Bacterial community variation in human body habitats across space and time. Science (New York, N.Y.). 326: 1694-7. PMID 19892944 DOI: 10.1126/science.1177486  1
2009 Goodman AL, McNulty NP, Zhao Y, Leip D, Mitra RD, Lozupone CA, Knight R, Gordon JI. Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host & Microbe. 6: 279-89. PMID 19748469 DOI: 10.1016/j.chom.2009.08.003  1
2009 Giannakis M, Bäckhed HK, Chen SL, Faith JJ, Wu M, Guruge JL, Engstrand L, Gordon JI. Response of gastric epithelial progenitors to Helicobacter pylori Isolates obtained from Swedish patients with chronic atrophic gastritis. The Journal of Biological Chemistry. 284: 30383-94. PMID 19723631 DOI: 10.1074/jbc.M109.052738  1
2009 Marco ML, Peters TH, Bongers RS, Molenaar D, van Hemert S, Sonnenburg JL, Gordon JI, Kleerebezem M. Lifestyle of Lactobacillus plantarum in the mouse caecum. Environmental Microbiology. 11: 2747-57. PMID 19638173 DOI: 10.1111/j.1462-2920.2009.02001.x  1
2009 Martens EC, Koropatkin NM, Smith TJ, Gordon JI. Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm. The Journal of Biological Chemistry. 284: 24673-7. PMID 19553672 DOI: 10.1074/jbc.R109.022848  1
2009 Crawford PA, Crowley JR, Sambandam N, Muegge BD, Costello EK, Hamady M, Knight R, Gordon JI. Regulation of myocardial ketone body metabolism by the gut microbiota during nutrient deprivation. Proceedings of the National Academy of Sciences of the United States of America. 106: 11276-81. PMID 19549860 DOI: 10.1073/pnas.0902366106  1
2009 Turnbaugh PJ, Gordon JI. The core gut microbiome, energy balance and obesity. The Journal of Physiology. 587: 4153-8. PMID 19491241 DOI: 10.1113/jphysiol.2009.174136  1
2009 Martens EC, Roth R, Heuser JE, Gordon JI. Coordinate regulation of glycan degradation and polysaccharide capsule biosynthesis by a prominent human gut symbiont. The Journal of Biological Chemistry. 284: 18445-57. PMID 19403529 DOI: 10.1074/jbc.M109.008094  1
2009 Mahowald MA, Rey FE, Seedorf H, Turnbaugh PJ, Fulton RS, Wollam A, Shah N, Wang C, Magrini V, Wilson RK, Cantarel BL, Coutinho PM, Henrissat B, Crock LW, Russell A, ... ... Gordon JI, et al. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proceedings of the National Academy of Sciences of the United States of America. 106: 5859-64. PMID 19321416 DOI: 10.1073/pnas.0901529106  1
2009 Koropatkin N, Martens EC, Gordon JI, Smith TJ. Structure of a SusD homologue, BT1043, involved in mucin O-glycan utilization in a prominent human gut symbiont. Biochemistry. 48: 1532-42. PMID 19191477 DOI: 10.1021/bi801942a  0.32
2009 Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. A core gut microbiome in obese and lean twins. Nature. 457: 480-4. PMID 19043404 DOI: 10.1038/nature07540  1
2008 Martens EC, Chiang HC, Gordon JI. Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host & Microbe. 4: 447-57. PMID 18996345 DOI: 10.1016/j.chom.2008.09.007  1
2008 Samuel BS, Shaito A, Motoike T, Rey FE, Backhed F, Manchester JK, Hammer RE, Williams SC, Crowley J, Yanagisawa M, Gordon JI. Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41. Proceedings of the National Academy of Sciences of the United States of America. 105: 16767-72. PMID 18931303 DOI: 10.1073/pnas.0808567105  1
2008 Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, Hu C, Wong FS, Szot GL, Bluestone JA, Gordon JI, Chervonsky AV. Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature. 455: 1109-13. PMID 18806780 DOI: 10.1038/nature07336  1
2008 Lozupone CA, Hamady M, Cantarel BL, Coutinho PM, Henrissat B, Gordon JI, Knight R. The convergence of carbohydrate active gene repertoires in human gut microbes. Proceedings of the National Academy of Sciences of the United States of America. 105: 15076-81. PMID 18806222 DOI: 10.1073/pnas.0807339105  0.44
2008 Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI. Worlds within worlds: evolution of the vertebrate gut microbiota. Nature Reviews. Microbiology. 6: 776-88. PMID 18794915 DOI: 10.1038/nrmicro1978  0.48
2008 Turnbaugh PJ, Gordon JI. An invitation to the marriage of metagenomics and metabolomics. Cell. 134: 708-13. PMID 18775300 DOI: 10.1016/j.cell.2008.08.025  1
2008 Godoy-Vitorino F, Ley RE, Gao Z, Pei Z, Ortiz-Zuazaga H, Pericchi LR, Garcia-Amado MA, Michelangeli F, Blaser MJ, Gordon JI, Domínguez-Bello MG. Bacterial community in the crop of the hoatzin, a neotropical folivorous flying bird. Applied and Environmental Microbiology. 74: 5905-12. PMID 18689523 DOI: 10.1128/AEM.00574-08  0.48
2008 Koropatkin NM, Martens EC, Gordon JI, Smith TJ. Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices. Structure (London, England : 1993). 16: 1105-15. PMID 18611383 DOI: 10.1016/j.str.2008.03.017  1
2008 Peterson DA, Frank DN, Pace NR, Gordon JI. Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases. Cell Host & Microbe. 3: 417-27. PMID 18541218 DOI: 10.1016/j.chom.2008.05.001  1
2008 Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA, Schrenzel MD, Knight R, Gordon JI. Evolution of mammals and their gut microbes. Science (New York, N.Y.). 320: 1647-51. PMID 18497261 DOI: 10.1126/science.1155725  1
2008 Turnbaugh PJ, Bäckhed F, Fulton L, Gordon JI. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host & Microbe. 3: 213-23. PMID 18407065 DOI: 10.1016/j.chom.2008.02.015  1
2008 Giannakis M, Chen SL, Karam SM, Engstrand L, Gordon JI. Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 4358-63. PMID 18332421 DOI: 10.1073/pnas.0800668105  1
2008 Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. Host-bacterial coevolution and the search for new drug targets. Current Opinion in Chemical Biology. 12: 109-14. PMID 18280814 DOI: 10.1016/j.cbpa.2008.01.015  1
2007 Peterson DA, McNulty NP, Guruge JL, Gordon JI. IgA response to symbiotic bacteria as a mediator of gut homeostasis. Cell Host & Microbe. 2: 328-39. PMID 18005754 DOI: 10.1016/j.chom.2007.09.013  1
2007 Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The human microbiome project. Nature. 449: 804-10. PMID 17943116 DOI: 10.1038/nature06244  1
2007 Xu J, Mahowald MA, Ley RE, Lozupone CA, Hamady M, Martens EC, Henrissat B, Coutinho PM, Minx P, Latreille P, Cordum H, Van Brunt A, Kim K, Fulton RS, Fulton LA, ... ... Gordon JI, et al. Evolution of symbiotic bacteria in the distal human intestine. Plos Biology. 5: e156. PMID 17579514 DOI: 10.1371/journal.pbio.0050156  1
2007 Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, Latreille P, Kim K, Wilson RK, Gordon JI. Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut Proceedings of the National Academy of Sciences of the United States of America. 104: 10643-10648. PMID 17563350 DOI: 10.1073/pnas.0704189104  1
2007 Reigstad CS, Hultgren SJ, Gordon JI. Functional genomic studies of uropathogenic Escherichia coli and host urothelial cells when intracellular bacterial communities are assembled. The Journal of Biological Chemistry. 282: 21259-67. PMID 17504765 DOI: 10.1074/jbc.M611502200  1
2007 Rawls JF, Mahowald MA, Goodman AL, Trent CM, Gordon JI. In vivo imaging and genetic analysis link bacterial motility and symbiosis in the zebrafish gut. Proceedings of the National Academy of Sciences of the United States of America. 104: 7622-7. PMID 17456593 DOI: 10.1073/pnas.0702386104  1
2007 Lecuit M, Sonnenburg JL, Cossart P, Gordon JI. Functional genomic studies of the intestinal response to a foodborne enteropathogen in a humanized gnotobiotic mouse model. The Journal of Biological Chemistry. 282: 15065-72. PMID 17389602 DOI: 10.1074/jbc.M610926200  1
2006 Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 444: 1027-31. PMID 17183312 DOI: 10.1038/nature05414  1
2006 Ley RE, Turnbaugh PJ, Klein S, Gordon JI. Microbial ecology: human gut microbes associated with obesity. Nature. 444: 1022-3. PMID 17183309 DOI: 10.1038/4441022a  1
2006 Rawls JF, Mahowald MA, Ley RE, Gordon JI. Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell. 127: 423-33. PMID 17055441 DOI: 10.1016/j.cell.2006.08.043  1
2006 Ippolito JE, Merritt ME, Bäckhed F, Moulder KL, Mennerick S, Manchester JK, Gammon ST, Piwnica-Worms D, Gordon JI. Linkage between cellular communications, energy utilization, and proliferation in metastatic neuroendocrine cancers. Proceedings of the National Academy of Sciences of the United States of America. 103: 12505-10. PMID 16895983 DOI: 10.1073/pnas.0605207103  1
2006 Oh JD, Kling-Bäckhed H, Giannakis M, Xu J, Fulton RS, Fulton LA, Cordum HS, Wang C, Elliott G, Edwards J, Mardis ER, Engstrand LG, Gordon JI. The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression. Proceedings of the National Academy of Sciences of the United States of America. 103: 9999-10004. PMID 16788065 DOI: 10.1073/pnas.0603784103  1
2006 Samuel BS, Gordon JI. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proceedings of the National Academy of Sciences of the United States of America. 103: 10011-6. PMID 16782812 DOI: 10.1073/pnas.0602187103  1
2006 Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE. Metagenomic analysis of the human distal gut microbiome. Science (New York, N.Y.). 312: 1355-9. PMID 16741115 DOI: 10.1126/science.1124234  1
2006 Sonnenburg ED, Sonnenburg JL, Manchester JK, Hansen EE, Chiang HC, Gordon JI. A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism. Proceedings of the National Academy of Sciences of the United States of America. 103: 8834-9. PMID 16735464 DOI: 10.1073/pnas.0603249103  1
2006 Chen SL, Hung CS, Xu J, Reigstad CS, Magrini V, Sabo A, Blasiar D, Bieri T, Meyer RR, Ozersky P, Armstrong JR, Fulton RS, Latreille JP, Spieth J, Hooton TM, ... ... Gordon JI, et al. Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proceedings of the National Academy of Sciences of the United States of America. 103: 5977-82. PMID 16585510 DOI: 10.1073/pnas.0600938103  1
2006 Giannakis M, Stappenbeck TS, Mills JC, Leip DG, Lovett M, Clifton SW, Ippolito JE, Glasscock JI, Arumugam M, Brent MR, Gordon JI. Molecular properties of adult mouse gastric and intestinal epithelial progenitors in their niches. The Journal of Biological Chemistry. 281: 11292-300. PMID 16464855 DOI: 10.1074/jbc.M512118200  1
2006 Oh JD, Kling-Bäckhed H, Giannakis M, Engstrand LG, Gordon JI. Interactions between gastric epithelial stem cells and Helicobacter pylori in the setting of chronic atrophic gastritis. Current Opinion in Microbiology. 9: 21-7. PMID 16406776 DOI: 10.1016/j.mib.2005.12.013  1
2005 Ippolito JE, Xu J, Jain S, Moulder K, Mennerick S, Crowley JR, Townsend RR, Gordon JI. An integrated functional genomics and metabolomics approach for defining poor prognosis in human neuroendocrine cancers. Proceedings of the National Academy of Sciences of the United States of America. 102: 9901-6. PMID 15998737 DOI: 10.1073/pnas.0500756102  1
2004 Rawls JF, Samuel BS, Gordon JI. Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota. Proceedings of the National Academy of Sciences of the United States of America. 101: 4596-601. PMID 15070763 DOI: 10.1073/pnas.0400706101  1
2004 Syder AJ, Karam SM, Mills JC, Ippolito JE, Ansari HR, Farook V, Gordon JI. A transgenic mouse model of metastatic carcinoma involving transdifferentiation of a gastric epithelial lineage progenitor to a neuroendocrine phenotype. Proceedings of the National Academy of Sciences of the United States of America. 101: 4471-6. PMID 15070742 DOI: 10.1073/pnas.0307983101  1
2004 Xu J, Chiang HC, Bjursell MK, Gordon JI. Message from a human gut symbiont: sensitivity is a prerequisite for sharing. Trends in Microbiology. 12: 21-8. PMID 14700548  0.32
2003 Xu J, Bjursell MK, Himrod J, Deng S, Carmichael LK, Chiang HC, Hooper LV, Gordon JI. A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science (New York, N.Y.). 299: 2074-6. PMID 12663928 DOI: 10.1126/science.1080029  0.32
2003 Syder AJ, Oh JD, Guruge JL, O'Donnell D, Karlsson M, Mills JC, Björkholm BM, Gordon JI. The impact of parietal cells on Helicobacter pylori tropism and host pathology: an analysis using gnotobiotic normal and transgenic mice. Proceedings of the National Academy of Sciences of the United States of America. 100: 3467-72. PMID 12629225 DOI: 10.1073/pnas.0230380100  1
2002 Hu Y, Ippolito JE, Garabedian EM, Humphrey PA, Gordon JI. Molecular characterization of a metastatic neuroendocrine cell cancer arising in the prostates of transgenic mice. The Journal of Biological Chemistry. 277: 44462-74. PMID 12228243 DOI: 10.1074/jbc.M205784200  1
2002 Mysorekar IU, Lorenz RG, Gordon JI. A gnotobiotic transgenic mouse model for studying interactions between small intestinal enterocytes and intraepithelial lymphocytes. The Journal of Biological Chemistry. 277: 37811-9. PMID 12138109 DOI: 10.1074/jbc.M205300200  1
2002 Björkholm BM, Guruge JL, Oh JD, Syder AJ, Salama N, Guillemin K, Falkow S, Nilsson C, Falk PG, Engstrand L, Gordon JI. Colonization of germ-free transgenic mice with genotyped Helicobacter pylori strains from a case-control study of gastric cancer reveals a correlation between host responses and HsdS components of type I restriction-modification systems. The Journal of Biological Chemistry. 277: 34191-7. PMID 12105196 DOI: 10.1074/jbc.M203613200  1
2002 Song SK, Qu Z, Garabedian EM, Gordon JI, Milbrandt J, Ackerman JJ. Improved magnetic resonance imaging detection of prostate cancer in a transgenic mouse model. Cancer Research. 62: 1555-8. PMID 11888935  0.68
2002 Kopan R, Lee J, Lin MH, Syder AJ, Kesterson J, Crutchfield N, Li CR, Wu W, Books J, Gordon JI. Genetic mosaic analysis indicates that the bulb region of coat hair follicles contains a resident population of several active multipotent epithelial lineage progenitors. Developmental Biology. 242: 44-57. PMID 11795939 DOI: 10.1006/dbio.2001.0516  1
2002 Jacobsen CM, Narita N, Bielinska M, Syder AJ, Gordon JI, Wilson DB. Genetic mosaic analysis reveals that GATA-4 is required for proper differentiation of mouse gastric epithelium. Developmental Biology. 241: 34-46. PMID 11784093 DOI: 10.1006/dbio.2001.0424  1
2002 Mysorekar IU, Mulvey MA, Hultgren SJ, Gordon JI. Molecular regulation of urothelial renewal and host defenses during infection with uropathogenic Escherichia coli. The Journal of Biological Chemistry. 277: 7412-9. PMID 11744708 DOI: 10.1074/jbc.M110560200  1
2001 Mills JC, Syder AJ, Hong CV, Guruge JL, Raaii F, Gordon JI. A molecular profile of the mouse gastric parietal cell with and without exposure to Helicobacter pylori. Proceedings of the National Academy of Sciences of the United States of America. 98: 13687-92. PMID 11717430 DOI: 10.1073/pnas.231332398  1
2001 Farazi TA, Waksman G, Gordon JI. The biology and enzymology of protein N-myristoylation. The Journal of Biological Chemistry. 276: 39501-4. PMID 11527981 DOI: 10.1074/jbc.R100042200  1
2001 Farazi TA, Manchester JK, Waksman G, Gordon JI. Pre-steady-state kinetic studies of Saccharomyces cerevisiae myristoylCoA:protein N-myristoyltransferase mutants identify residues involved in catalysis. Biochemistry. 40: 9177-86. PMID 11478885 DOI: 10.1021/bi0107997  1
2001 Farazi TA, Waksman G, Gordon JI. Structures of Saccharomyces cerevisiae N-myristoyltransferase with bound myristoylCoA and peptide provide insights about substrate recognition and catalysis. Biochemistry. 40: 6335-43. PMID 11371195 DOI: 10.1021/bi0101401  1
2001 Fütterer K, Murray CL, Bhatnagar RS, Gokel GW, Gordon JI, Waksman G. Crystallographic phasing of myristoyl-CoA-protein N-myristoyltransferase using an iodinated analog of myristoyl-CoA. Acta Crystallographica. Section D, Biological Crystallography. 57: 393-400. PMID 11223516 DOI: 10.1107/S090744490100052X  1
2000 Farazi TA, Manchester JK, Gordon JI. Transient-state kinetic analysis of Saccharomyces cerevisiae myristoylCoA:protein N-myristoyltransferase reveals that a step after chemical transformation is rate limiting. Biochemistry. 39: 15807-16. PMID 11123906 DOI: 10.1021/bi002074t  1
2000 Falk PG, Syder AJ, Guruge JL, Kirschner D, Blaser MJ, Gordon JI. Theoretical and experimental approaches for studying factors defining the Helicobacter pylori-host relationship. Trends in Microbiology. 8: 321-9. PMID 10878767 DOI: 10.1016/S0966-842X(00)01780-7  1
1999 Bhatnagar RS, Fütterer K, Waksman G, Gordon JI. The structure of myristoyl-CoA:protein N-myristoyltransferase. Biochimica Et Biophysica Acta. 1441: 162-72. PMID 10570244 DOI: 10.1016/S1388-1981(99)00155-9  1
1999 Syder AJ, Guruge JL, Li Q, Hu Y, Oleksiewicz CM, Lorenz RG, Karam SM, Falk PG, Gordon JI. Helicobacter pylori attaches to NeuAc alpha 2,3Gal beta 1,4 glycoconjugates produced in the stomach of transgenic mice lacking parietal cells. Molecular Cell. 3: 263-74. PMID 10198629 DOI: 10.1016/S1097-2765(00)80454-2  1
1998 Stappenbeck TS, Wong MH, Saam JR, Mysorekar IU, Gordon JI. Notes from some crypt watchers: regulation of renewal in the mouse intestinal epithelium. Current Opinion in Cell Biology. 10: 702-9. PMID 9914172 DOI: 10.1016/S0955-0674(98)80110-5  1
1998 Garabedian EM, Humphrey PA, Gordon JI. A transgenic mouse model of metastatic prostate cancer originating from neuroendocrine cells. Proceedings of the National Academy of Sciences of the United States of America. 95: 15382-7. PMID 9860977 DOI: 10.1073/pnas.95.26.15382  1
1998 Bhatnagar RS, Fütterer K, Farazi TA, Korolev S, Murray CL, Jackson-Machelski E, Gokel GW, Gordon JI, Waksman G. Structure of N-myristoyltransferase with bound myristoylCoA and peptide substrate analogs. Nature Structural Biology. 5: 1091-7. PMID 9846880 DOI: 10.1038/4202  1
1998 Ashrafi K, Farazi TA, Gordon JI. A role for Saccharomyces cerevisiae fatty acid activation protein 4 in regulating protein N-myristoylation during entry into stationary phase. The Journal of Biological Chemistry. 273: 25864-74. PMID 9748261 DOI: 10.1074/jbc.273.40.25864  1
1997 Bhatnagar RS, Gordon JI. Understanding covalent modifications of proteins by lipids: where cell biology and biophysics mingle. Trends in Cell Biology. 7: 14-20. PMID 17708893 DOI: 10.1016/S0962-8924(97)10044-7  1
1997 Garabedian EM, Roberts LJ, McNevin MS, Gordon JI. Examining the role of Paneth cells in the small intestine by lineage ablation in transgenic mice. The Journal of Biological Chemistry. 272: 23729-40. PMID 9295317 DOI: 10.1074/jbc.272.38.23729  1
1997 Bhatnagar RS, Schall OF, Jackson-Machelski E, Sikorski JA, Devadas B, Gokel GW, Gordon JI. Titration calorimetric analysis of AcylCoA recognition by myristoylCoA:protein N-myristoyltransferase. Biochemistry. 36: 6700-8. PMID 9184150 DOI: 10.1021/bi970311v  1
1996 Wong MH, Hermiston ML, Syder AJ, Gordon JI. Forced expression of the tumor suppressor adenomatosis polyposis coli protein induces disordered cell migration in the intestinal epithelium. Proceedings of the National Academy of Sciences of the United States of America. 93: 9588-93. PMID 8790374 DOI: 10.1073/pnas.93.18.9588  1
1995 Bhatnagar RS, Gordon JI. Thermodynamic studies of myristoyl-CoA: protein N-myristoyltransferase using isothermal titration calorimetry. Methods in Enzymology. 250: 467-86. PMID 7651172 DOI: 10.1016/0076-6879(95)50091-X  1
1994 Bhatnagar RS, Jackson-Machelski E, McWherter CA, Gordon JI. Isothermal titration calorimetric studies of Saccharomyces cerevisiae myristoyl-CoA:protein N-myristoyltransferase. Determinants of binding energy and catalytic discrimination among acyl-CoA and peptide ligands. The Journal of Biological Chemistry. 269: 11045-53. PMID 8157630  1
1994 Johnson DR, Bhatnagar RS, Knoll LJ, Gordon JI. Genetic and biochemical studies of protein N-myristoylation. Annual Review of Biochemistry. 63: 869-914. PMID 7979256 DOI: 10.1146/  1
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