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Peter J. Turnbaugh, Ph.D. - Publications

Affiliations: 
2004-2009 Center for Genome Sciences Washington University, Saint Louis, St. Louis, MO 
 2010-2014 Center for Systems Biology Harvard University, Cambridge, MA, United States 
 2014- Microbiology & Immunology University of California at San Francisco and Gladstone Institutes 
Area:
Microbiology Biology, Ecology Biology, Genetics
Website:
turnbaughlab.ucsf.edu
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Year Citation  Score
2024 Carmody RN, Varady K, Turnbaugh PJ. Digesting the complex metabolic effects of diet on the host and microbiome. Cell. 187: 3857-3876. PMID 39059362 DOI: 10.1016/j.cell.2024.06.032  0.725
2024 Noecker C, Turnbaugh PJ. Emerging tools and best practices for studying gut microbial community metabolism. Nature Metabolism. 6: 1225-1236. PMID 38961185 DOI: 10.1038/s42255-024-01074-z  0.348
2024 Trepka KR, Kidder WA, Kyaw TS, Olson CA, Upadhyay V, Noecker C, Stanfield D, Steiding P, Spanogiannopoulos P, Dumlao D, Turnbaugh JA, Stachler MD, Van Blarigan EL, Venook AP, Atreya CE, ... Turnbaugh PJ, et al. Expansion of a bacterial operon during cancer treatment ameliorates drug toxicity. Biorxiv : the Preprint Server For Biology. PMID 38895199 DOI: 10.1101/2024.06.04.597471  0.323
2024 McCurry MD, D'Agostino GD, Walsh JT, Bisanz JE, Zalosnik I, Dong X, Morris DJ, Korzenik JR, Edlow AG, Balskus EP, Turnbaugh PJ, Huh JR, Devlin AS. Gut bacteria convert glucocorticoids into progestins in the presence of hydrogen gas. Cell. PMID 38795705 DOI: 10.1016/j.cell.2024.05.005  0.304
2023 Alexander M, Upadhyay V, Rock R, Ramirez L, Puchalska P, Orellana D, Ang QY, Turnbaugh JA, Tian Y, Dumlao D, Nayak R, Patterson A, Newman JC, Crawford PA, Turnbaugh PJ. A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity. Biorxiv : the Preprint Server For Biology. PMID 37961209 DOI: 10.1101/2023.11.02.565382  0.667
2023 Pieper LM, Spanogiannopoulos P, Volk RF, Miller CJ, Wright AT, Turnbaugh PJ. The global anaerobic metabolism regulator is necessary for the degradation of food dyes and drugs by . Mbio. e0157323. PMID 37642463 DOI: 10.1128/mbio.01573-23  0.435
2023 Noecker C, Sanchez J, Bisanz JE, Escalante V, Alexander M, Trepka K, Heinken A, Liu Y, Dodd D, Thiele I, DeFelice BC, Turnbaugh PJ. Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta. Plos Biology. 21: e3002125. PMID 37205710 DOI: 10.1371/journal.pbio.3002125  0.417
2022 Upadhyay V, Turnbaugh PJ. nicX-ing bad habits with your microbial friends. Nature Metabolism. 4: 1442-1443. PMID 36333489 DOI: 10.1038/s42255-022-00684-9  0.43
2022 Tolonen AC, Beauchemin N, Bayne C, Li L, Tan J, Lee J, Meehan BM, Meisner J, Millet Y, LeBlanc G, Kottler R, Rapp E, Murphy C, Turnbaugh PJ, von Maltzahn G, et al. Synthetic glycans control gut microbiome structure and mitigate colitis in mice. Nature Communications. 13: 1244. PMID 35273143 DOI: 10.1038/s41467-022-28856-x  0.417
2021 Lam KN, Spanogiannopoulos P, Soto-Perez P, Alexander M, Nalley MJ, Bisanz JE, Nayak RR, Weakley AM, Yu FB, Turnbaugh PJ. Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome. Cell Reports. 37: 109930. PMID 34731631 DOI: 10.1016/j.celrep.2021.109930  0.351
2021 Ang QY, Alba DL, Upadhyay V, Bisanz JE, Cai J, Lee HL, Barajas E, Wei G, Noecker C, Patterson AD, Koliwad SK, Turnbaugh PJ. The East Asian gut microbiome is distinct from colocalized white subjects and connected to metabolic health. Elife. 10. PMID 34617511 DOI: 10.7554/eLife.70349  0.427
2021 von Schwartzenberg RJ, Bisanz JE, Lyalina S, Spanogiannopoulos P, Ang QY, Cai J, Dickmann S, Friedrich M, Liu SY, Collins SL, Ingebrigtsen D, Miller S, Turnbaugh JA, Patterson AD, Pollard KS, ... ... Turnbaugh PJ, et al. Caloric restriction disrupts the microbiota and colonization resistance. Nature. PMID 34163067 DOI: 10.1038/s41586-021-03663-4  0.497
2021 Nayak RR, Alexander M, Deshpande I, Stapleton-Gray K, Rimal B, Patterson AD, Ubeda C, Scher JU, Turnbaugh PJ. Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation. Cell Host & Microbe. PMID 33440172 DOI: 10.1016/j.chom.2020.12.008  0.432
2020 Artacho A, Isaac S, Nayak R, Flor-Duro A, Alexander M, Koo I, Manasson J, Smith PB, Rosenthal P, Homsi Y, Gulko P, Pons J, Puchades-Carrasco L, Izmirly P, Patterson A, ... ... Turnbaugh PJ, et al. The Pre-treatment Gut Microbiome is Associated with Lack of Response to Methotrexate in New Onset Rheumatoid Arthritis. Arthritis & Rheumatology (Hoboken, N.J.). PMID 33314800 DOI: 10.1002/art.41622  0.273
2020 Man K, Bowman C, Braverman KN, Escalante V, Tian Y, Bisanz JE, Ganeshan K, Wang B, Patterson A, Bayrer JR, Turnbaugh PJ, Chawla A. A thermogenic fat-epithelium cell axis regulates intestinal disease tolerance. Proceedings of the National Academy of Sciences of the United States of America. PMID 33257580 DOI: 10.1073/pnas.2012003117  0.365
2020 Pröbstel AK, Zhou X, Baumann R, Wischnewski S, Kutza M, Rojas OL, Sellrie K, Bischof A, Kim K, Ramesh A, Dandekar R, Greenfield AL, Schubert RD, Bisanz JE, Vistnes S, ... ... Turnbaugh PJ, et al. Gut microbiota-specific IgA B cells traffic to the CNS in active multiple sclerosis. Science Immunology. 5. PMID 33219152 DOI: 10.1126/sciimmunol.abc7191  0.304
2020 Alexander M, Turnbaugh PJ. Stressed-out gut bacteria are pterin up gut inflammation. Nature Microbiology. 5: 1316-1318. PMID 33087901 DOI: 10.1038/s41564-020-00804-9  0.335
2020 Stubbs BJ, Koutnik AP, Goldberg EL, Upadhyay V, Turnbaugh PJ, Verdin E, Newman JC. Investigating Ketone Bodies as Immunometabolic Countermeasures against Respiratory Viral Infections. Med (New York, N.Y.). PMID 32838361 DOI: 10.1016/j.medj.2020.06.008  0.259
2020 Alexander M, Turnbaugh PJ. Deconstructing Mechanisms of Diet-Microbiome-Immune Interactions. Immunity. 53: 264-276. PMID 32814025 DOI: 10.1016/J.Immuni.2020.07.015  0.505
2020 Zou L, Spanogiannopoulos P, Pieper LM, Chien HC, Cai W, Khuri N, Pottel J, Vora B, Ni Z, Tsakalozou E, Zhang W, Shoichet BK, Giacomini KM, Turnbaugh PJ. Bacterial metabolism rescues the inhibition of intestinal drug absorption by food and drug additives. Proceedings of the National Academy of Sciences of the United States of America. PMID 32571913 DOI: 10.1073/Pnas.1920483117  0.487
2020 Ang QY, Alexander M, Newman JC, Tian Y, Cai J, Upadhyay V, Turnbaugh JA, Verdin E, Hall KD, Leibel RL, Ravussin E, Rosenbaum M, Patterson AD, Turnbaugh PJ. Ketogenic Diets Alter the Gut Microbiome Resulting in Decreased Intestinal Th17 Cells. Cell. PMID 32437658 DOI: 10.1016/J.Cell.2020.04.027  0.582
2020 Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, ... ... Turnbaugh PJ, et al. A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria. Cell Host & Microbe. PMID 32348781 DOI: 10.1016/J.Chom.2020.04.006  0.518
2020 Basolo A, Hohenadel M, Ang QY, Piaggi P, Heinitz S, Walter M, Walter P, Parrington S, Trinidad DD, von Schwartzenberg RJ, Turnbaugh PJ, Krakoff J. Effects of underfeeding and oral vancomycin on gut microbiome and nutrient absorption in humans. Nature Medicine. PMID 32235930 DOI: 10.1038/S41591-020-0801-Z  0.498
2020 Scher JU, Nayak RR, Ubeda C, Turnbaugh PJ, Abramson SB. Pharmacomicrobiomics in inflammatory arthritis: gut microbiome as modulator of therapeutic response. Nature Reviews. Rheumatology. PMID 32157196 DOI: 10.1038/S41584-020-0395-3  0.316
2020 Maini Rekdal V, Nol Bernadino P, Luescher MU, Kiamehr S, Le C, Bisanz JE, Turnbaugh PJ, Bess EN, Balskus EP. A widely distributed metalloenzyme class enables gut microbial metabolism of host- and diet-derived catechols. Elife. 9. PMID 32067637 DOI: 10.7554/Elife.50845  0.54
2020 Turnbaugh PJ. Diet should be a tool for researchers, not a treatment. Nature. 577: S23. PMID 31996822 DOI: 10.1038/D41586-020-00202-5  0.304
2020 Turnbaugh P. S4.3 - Impact of the human gut microbiome on drug disposition Drug Metabolism and Pharmacokinetics. 35. DOI: 10.1016/J.Dmpk.2020.04.302  0.333
2019 Bess EN, Bisanz JE, Yarza F, Bustion A, Rich BE, Li X, Kitamura S, Waligurski E, Ang QY, Alba DL, Spanogiannopoulos P, Nayfach S, Koliwad SK, Wolan DW, Franke AA, ... Turnbaugh PJ, et al. Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria. Nature Microbiology. PMID 31686027 DOI: 10.1038/S41564-019-0596-1  0.529
2019 Reese AT, Kartzinel TR, Petrone BL, Turnbaugh PJ, Pringle RM, David LA. Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept. Msystems. 4. PMID 31594830 DOI: 10.1128/mSystems.00458-19  0.697
2019 Carmody RN, Bisanz JE, Bowen BP, Maurice CF, Lyalina S, Louie KB, Treen D, Chadaideh KS, Maini Rekdal V, Bess EN, Spanogiannopoulos P, Ang QY, Bauer KC, Balon TW, Pollard KS, ... ... Turnbaugh PJ, et al. Cooking shapes the structure and function of the gut microbiome. Nature Microbiology. PMID 31570867 DOI: 10.1038/S41564-019-0569-4  0.809
2019 Soto-Perez P, Bisanz JE, Berry JD, Lam KN, Bondy-Denomy J, Turnbaugh PJ. CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog. Cell Host & Microbe. PMID 31492655 DOI: 10.1016/J.Chom.2019.08.008  0.323
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Turnbaugh PJ, et al. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31399723 DOI: 10.1038/S41587-019-0252-6  0.54
2019 Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, ... ... Turnbaugh PJ, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology. PMID 31341288 DOI: 10.1038/S41587-019-0209-9  0.526
2019 Bisanz JE, Upadhyay V, Turnbaugh JA, Ly K, Turnbaugh PJ. Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet. Cell Host & Microbe. PMID 31324413 DOI: 10.1016/J.Chom.2019.06.013  0.54
2019 Lam KN, Alexander M, Turnbaugh PJ. Precision Medicine Goes Microscopic: Engineering the Microbiome to Improve Drug Outcomes. Cell Host & Microbe. 26: 22-34. PMID 31295421 DOI: 10.1016/J.Chom.2019.06.011  0.491
2019 Maini Rekdal V, Bess EN, Bisanz JE, Turnbaugh PJ, Balskus EP. Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism. Science (New York, N.Y.). 364. PMID 31196984 DOI: 10.1126/Science.Aau6323  0.384
2019 Chagwedera DN, Ang QY, Bisanz JE, Leong YA, Ganeshan K, Cai J, Patterson AD, Turnbaugh PJ, Chawla A. Nutrient Sensing in CD11c Cells Alters the Gut Microbiota to Regulate Food Intake and Body Mass. Cell Metabolism. PMID 31130466 DOI: 10.1016/J.Cmet.2019.05.002  0.407
2019 Devoto AE, Santini JM, Olm MR, Anantharaman K, Munk P, Tung J, Archie EA, Turnbaugh PJ, Seed KD, Blekhman R, Aarestrup FM, Thomas BC, Banfield JF. Megaphages infect Prevotella and variants are widespread in gut microbiomes. Nature Microbiology. PMID 30692672 DOI: 10.1038/S41564-018-0338-9  0.461
2019 Rekdal VM, Bernadino PN, Luescher MU, Kiamehr S, Le C, Bisanz JE, Turnbaugh PJ, Bess EN, Balskus EP. Author response: A widely distributed metalloenzyme class enables gut microbial metabolism of host- and diet-derived catechols Elife. DOI: 10.7554/Elife.50845.Sa2  0.436
2019 Isaac S, Artacho A, Nayak R, Flor A, Abramson S, Rosenthal P, Puchades L, Patterson A, Pineda-Lucena A, Turnbaugh P, Ubeda C, Scher J. Op0119 The Pre-Treatment Gut Microbiome Predicts Early Response To Rheumatoid Arthritis Therapy Annals of the Rheumatic Diseases. 78: 133-134. DOI: 10.1136/Annrheumdis-2019-Eular.8378  0.327
2019 Turnbaugh P. Predicting and preventing the inactivation of drugs by human gut bacteria Drug Metabolism and Pharmacokinetics. 34. DOI: 10.1016/J.Dmpk.2018.09.050  0.357
2018 Bisanz JE, Spanogiannopoulos P, Pieper LM, Bustion AE, Turnbaugh PJ. How to determine the role of the microbiome in drug disposition. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 30111623 DOI: 10.1124/Dmd.118.083402  0.35
2018 Balskus EP, Turnbaugh PJ, Wolan DW. Announcement of 2019 Keystone Symposia Conference: "Microbiome: Chemical Mechanisms and Biological Consequences". Msystems. 3. PMID 30057942 DOI: 10.1128/mSystems.00115-18  0.398
2018 Schneider C, O'Leary CE, von Moltke J, Liang HE, Ang QY, Turnbaugh PJ, Radhakrishnan S, Pellizzon M, Ma A, Locksley RM. A Metabolite-Triggered Tuft Cell-ILC2 Circuit Drives Small Intestinal Remodeling. Cell. PMID 29887373 DOI: 10.1016/J.Cell.2018.05.014  0.336
2018 Koppel N, Bisanz JE, Pandelia ME, Turnbaugh PJ, Balskus EP. Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins. Elife. 7. PMID 29761785 DOI: 10.7554/Elife.33953  0.403
2018 Stanhope KL, Goran MI, Bosy-Westphal A, King JC, Schmidt LA, Schwarz JM, Stice E, Sylvetsky AC, Turnbaugh PJ, Bray GA, Gardner CD, Havel PJ, Malik V, Mason AE, Ravussin E, et al. Pathways and mechanisms linking dietary components to cardiometabolic disease: thinking beyond calories. Obesity Reviews : An Official Journal of the International Association For the Study of Obesity. PMID 29761610 DOI: 10.1111/Obr.12699  0.375
2018 Spanogiannopoulos P, Turnbaugh PJ. Broad collateral damage of drugs against the gut microbiome. Nature Reviews. Gastroenterology & Hepatology. PMID 29752457 DOI: 10.1038/S41575-018-0028-3  0.472
2018 Zhang L, Carmody RN, Kalariya HM, Duran RM, Moskal K, Poulev A, Kuhn P, Tveter KM, Turnbaugh PJ, Raskin I, Roopchand DE. Grape proanthocyanidin-induced intestinal bloom of Akkermansia muciniphila is dependent on its baseline abundance and precedes activation of host genes related to metabolic health. The Journal of Nutritional Biochemistry. 56: 142-151. PMID 29571008 DOI: 10.1016/J.Jnutbio.2018.02.009  0.733
2018 Fuks G, Elgart M, Amir A, Zeisel A, Turnbaugh PJ, Soen Y, Shental N. Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling. Microbiome. 6: 17. PMID 29373999 DOI: 10.1186/S40168-017-0396-X  0.378
2018 Turnbaugh P. Decision letter: The human gut chemical landscape predicts microbe-mediated biotransformation of foods and drugs Elife. DOI: 10.7554/Elife.42866.021  0.314
2018 Koppel N, Bisanz JE, Pandelia M, Turnbaugh PJ, Balskus EP. Author response: Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins Elife. DOI: 10.7554/Elife.33953.044  0.329
2017 Yu AM, Ingelman-Sundberg M, Cherrington NJ, Aleksunes LM, Zanger UM, Xie W, Jeong H, Morgan EM, Turnbaugh PJ, Klaassen CD, Bhatt AP, Redinbo MR, Hao P, Waxman DJ, Wang L, et al. Regulation of drug metabolism and toxicity by multiple factors of genetics, epigenetics, lncRNAs, gut microbiota, and diseases: a meeting report of the 21(st) International Symposium on Microsomes and Drug Oxidations (MDO). Acta Pharmaceutica Sinica. B. 7: 241-248. PMID 28388695 DOI: 10.1016/J.Apsb.2016.12.006  0.325
2017 Turnbaugh PJ. Microbes and Diet-Induced Obesity: Fast, Cheap, and Out of Control. Cell Host & Microbe. 21: 278-281. PMID 28279330 DOI: 10.1016/J.Chom.2017.02.021  0.502
2016 Bokulich NA, Rideout JR, Mercurio WG, Shiffer A, Wolfe B, Maurice CF, Dutton RJ, Turnbaugh PJ, Knight R, Caporaso JG. mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking. Msystems. 1. PMID 27822553 DOI: 10.1128/mSystems.00062-16  0.697
2016 Nayak RR, Turnbaugh PJ. Mirror, mirror on the wall: which microbiomes will help heal them all? Bmc Medicine. 14: 72. PMID 27146150 DOI: 10.1186/S12916-016-0622-6  0.347
2016 Spanogiannopoulos P, Bess EN, Carmody RN, Turnbaugh PJ. The microbial pharmacists within us: a metagenomic view of xenobiotic metabolism. Nature Reviews. Microbiology. PMID 26972811 DOI: 10.1038/Nrmicro.2016.17  0.739
2016 Spanogiannopoulos P, Turnbaugh PJ. Metabolism of anticancer drugs by the human gut microbiome Toxicology Letters. 259. DOI: 10.1016/J.Toxlet.2016.07.683  0.378
2015 Jumpertz von Schwartzenberg R, Turnbaugh PJ. Siri, What Should I Eat? Cell. 163: 1051-2. PMID 26590412 DOI: 10.1016/J.Cell.2015.11.012  0.354
2015 Maurice CF, Cl Knowles S, Ladau J, Pollard KS, Fenton A, Pedersen AB, Turnbaugh PJ. Marked seasonal variation in the wild mouse gut microbiota. The Isme Journal. PMID 26023870 DOI: 10.1038/Ismej.2015.53  0.782
2015 David LA, Weil A, Ryan ET, Calderwood SB, Harris JB, Chowdhury F, Begum Y, Qadri F, LaRocque RC, Turnbaugh PJ. Gut microbial succession follows acute secretory diarrhea in humans. Mbio. 6: e00381-15. PMID 25991682 DOI: 10.1128/Mbio.00381-15  0.736
2015 Martínez-del Campo A, Bodea S, Hamer HA, Marks JA, Haiser HJ, Turnbaugh PJ, Balskus EP. Characterization and detection of a widely distributed gene cluster that predicts anaerobic choline utilization by human gut bacteria. Mbio. 6. PMID 25873372 DOI: 10.1128/Mbio.00042-15  0.479
2015 Roopchand DE, Carmody RN, Kuhn P, Moskal K, Rojas-Silva P, Turnbaugh PJ, Raskin I. Dietary Polyphenols Promote Growth of the Gut Bacterium Akkermansia muciniphila and Attenuate High-Fat Diet-Induced Metabolic Syndrome. Diabetes. 64: 2847-58. PMID 25845659 DOI: 10.2337/Db14-1916  0.748
2015 Carmody RN, Gerber GK, Luevano JM, Gatti DM, Somes L, Svenson KL, Turnbaugh PJ. Diet dominates host genotype in shaping the murine gut microbiota. Cell Host & Microbe. 17: 72-84. PMID 25532804 DOI: 10.1016/J.Chom.2014.11.010  0.775
2014 Pickard JM, Maurice CF, Kinnebrew MA, Abt MC, Schenten D, Golovkina TV, Bogatyrev SR, Ismagilov RF, Pamer EG, Turnbaugh PJ, Chervonsky AV. Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness. Nature. 514: 638-41. PMID 25274297 DOI: 10.1038/Nature13823  0.737
2014 Patterson AD, Turnbaugh PJ. Microbial determinants of biochemical individuality and their impact on toxicology and pharmacology. Cell Metabolism. 20: 761-8. PMID 25156450 DOI: 10.1016/J.Cmet.2014.07.002  0.402
2014 Carmody RN, Turnbaugh PJ. Host-microbial interactions in the metabolism of therapeutic and diet-derived xenobiotics. The Journal of Clinical Investigation. 124: 4173-81. PMID 25105361 DOI: 10.1172/Jci72335  0.769
2014 Haiser HJ, Seim KL, Balskus EP, Turnbaugh PJ. Mechanistic insight into digoxin inactivation by Eggerthella lenta augments our understanding of its pharmacokinetics. Gut Microbes. 5: 233-8. PMID 24637603 DOI: 10.4161/Gmic.27915  0.415
2014 Ursell LK, Haiser HJ, Van Treuren W, Garg N, Reddivari L, Vanamala J, Dorrestein PC, Turnbaugh PJ, Knight R. The intestinal metabolome: an intersection between microbiota and host. Gastroenterology. 146: 1470-6. PMID 24631493 DOI: 10.1053/J.Gastro.2014.03.001  0.398
2014 David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, Biddinger SB, Dutton RJ, Turnbaugh PJ. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 505: 559-63. PMID 24336217 DOI: 10.1038/Nature12820  0.802
2013 Amir A, Zeisel A, Zuk O, Elgart M, Stern S, Shamir O, Turnbaugh PJ, Soen Y, Shental N. High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions. Nucleic Acids Research. 41: e205. PMID 24214960 DOI: 10.1093/Nar/Gkt1070  0.415
2013 Maurice CF, Turnbaugh PJ. Quantifying and identifying the active and damaged subsets of indigenous microbial communities Methods in Enzymology. 531: 91-107. PMID 24060117 DOI: 10.1016/B978-0-12-407863-5.00005-8  0.739
2013 Haiser HJ, Gootenberg DB, Chatman K, Sirasani G, Balskus EP, Turnbaugh PJ. Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta. Science (New York, N.Y.). 341: 295-8. PMID 23869020 DOI: 10.1126/Science.1235872  0.412
2013 Devkota S, Turnbaugh PJ. Cancer: An acidic link. Nature. 499: 37-8. PMID 23803768 DOI: 10.1038/Nature12404  0.362
2013 Brown J, de Vos WM, DiStefano PS, Doré J, Huttenhower C, Knight R, Lawley TD, Raes J, Turnbaugh P. Translating the human microbiome. Nature Biotechnology. 31: 304-8. PMID 23563424 DOI: 10.1038/Nbt.2543  0.302
2013 Maurice CF, Turnbaugh PJ. Quantifying the metabolic activities of human-associated microbial communities across multiple ecological scales. Fems Microbiology Reviews. 37: 830-48. PMID 23550823 DOI: 10.1111/1574-6976.12022  0.76
2013 Liou AP, Paziuk M, Luevano JM, Machineni S, Turnbaugh PJ, Kaplan LM. Conserved shifts in the gut microbiota due to gastric bypass reduce host weight and adiposity. Science Translational Medicine. 5: 178ra41. PMID 23536013 DOI: 10.1126/Scitranslmed.3005687  0.443
2013 Maurice CF, Haiser HJ, Turnbaugh PJ. Xenobiotics shape the physiology and gene expression of the active human gut microbiome Cell. 152: 39-50. PMID 23332745 DOI: 10.1016/J.Cell.2012.10.052  0.758
2013 Haiser HJ, Turnbaugh PJ. Developing a metagenomic view of xenobiotic metabolism. Pharmacological Research. 69: 21-31. PMID 22902524 DOI: 10.1016/J.Phrs.2012.07.009  0.476
2012 Liou AP, Turnbaugh PJ. Antibiotic exposure promotes fat gain. Cell Metabolism. 16: 408-10. PMID 23040064 DOI: 10.1016/J.Cmet.2012.09.009  0.342
2012 Carmody RN, Turnbaugh PJ. Gut microbes make for fattier fish. Cell Host & Microbe. 12: 259-61. PMID 22980321 DOI: 10.1016/J.Chom.2012.08.006  0.734
2012 Dutton RJ, Turnbaugh PJ. Taking a metagenomic view of human nutrition. Current Opinion in Clinical Nutrition and Metabolic Care. 15: 448-54. PMID 22878238 DOI: 10.1097/Mco.0B013E3283561133  0.472
2012 Turnbaugh PJ. Microbiology: fat, bile and gut microbes. Nature. 487: 47-8. PMID 22763552 DOI: 10.1038/487047A  0.431
2012 Haiser HJ, Turnbaugh PJ. Is it time for a metagenomic basis of therapeutics? Science (New York, N.Y.). 336: 1253-5. PMID 22674325 DOI: 10.1126/Science.1224396  0.426
2012 Greenblum S, Turnbaugh PJ, Borenstein E. Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease. Proceedings of the National Academy of Sciences of the United States of America. 109: 594-9. PMID 22184244 DOI: 10.1073/Pnas.1116053109  0.47
2012 Liou AP, Luevano JM, Turnbaugh PJ, Kaplan LM. 515 Weight-Independent Changes in Gut Microbial Ecology Regulate Adiposity Following Roux-en-Y Gastric Bypass Surgery in Mice Gastroenterology. 142: S-108. DOI: 10.1016/S0016-5085(12)60405-3  0.303
2011 Reshef DN, Reshef YA, Finucane HK, Grossman SR, McVean G, Turnbaugh PJ, Lander ES, Mitzenmacher M, Sabeti PC. Detecting novel associations in large data sets. Science (New York, N.Y.). 334: 1518-24. PMID 22174245 DOI: 10.1126/Science.1205438  0.301
2011 Babayan SA, Allen JE, Bradley JE, Geuking MB, Graham AL, Grencis RK, Kaufman J, McCoy KD, Paterson S, Smith KG, Turnbaugh PJ, Viney ME, Maizels RM, Pedersen AB. Wild immunology: converging on the real world. Annals of the New York Academy of Sciences. 1236: 17-29. PMID 22032399 DOI: 10.1111/J.1749-6632.2011.06251.X  0.312
2011 Turnbaugh PJ, Stintzi A. Human health and disease in a microbial world. Frontiers in Microbiology. 2: 190. PMID 21954396 DOI: 10.3389/Fmicb.2011.00190  0.467
2011 Jumpertz R, Le DS, Turnbaugh PJ, Trinidad C, Bogardus C, Gordon JI, Krakoff J. Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. The American Journal of Clinical Nutrition. 94: 58-65. PMID 21543530 DOI: 10.3945/Ajcn.110.010132  0.574
2011 Gonzalez A, Stombaugh J, Lozupone C, Turnbaugh PJ, Gordon JI, Knight R. The mind-body-microbial continuum. Dialogues in Clinical Neuroscience. 13: 55-62. PMID 21485746  0.515
2011 Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ. Removing noise from pyrosequenced amplicons. Bmc Bioinformatics. 12: 38. PMID 21276213 DOI: 10.1186/1471-2105-12-38  0.324
2011 Gootenberg DB, Turnbaugh PJ. Companion animals symposium: Humanized animal models of the microbiome Journal of Animal Science. 89: 1531-1537. PMID 20833767 DOI: 10.2527/Jas.2010-3371  0.508
2011 Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proceedings of the National Academy of Sciences of the United States of America. 108: 4516-22. PMID 20534432 DOI: 10.1073/Pnas.1000080107  0.387
2010 Turnbaugh PJ, Henrissat B, Gordon JI. Viewing the human microbiome through three-dimensional glasses: integrating structural and functional studies to better define the properties of myriad carbohydrate-active enzymes. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1261-4. PMID 20944220 DOI: 10.1107/S1744309110029088  0.585
2010 Peterson DA, Turnbaugh PJ. A microbe-dependent viral key to Crohn's box. Science Translational Medicine. 2: 43ps39. PMID 20686177 DOI: 10.1126/Scitranslmed.3001422  0.401
2010 Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, ... ... Turnbaugh PJ, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Methods. 7: 335-6. PMID 20383131 DOI: 10.1038/Nmeth.F.303  0.753
2010 Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T, Niazi F, Affourtit J, Egholm M, Henrissat B, Knight R, Gordon JI. Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proceedings of the National Academy of Sciences of the United States of America. 107: 7503-8. PMID 20363958 DOI: 10.1073/Pnas.1002355107  0.781
2009 Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Science Translational Medicine. 1: 6ra14. PMID 20368178 DOI: 10.1126/Scitranslmed.3000322  0.829
2009 Turnbaugh PJ, Gordon JI. The core gut microbiome, energy balance and obesity. The Journal of Physiology. 587: 4153-8. PMID 19491241 DOI: 10.1113/Jphysiol.2009.174136  0.58
2009 Mahowald MA, Rey FE, Seedorf H, Turnbaugh PJ, Fulton RS, Wollam A, Shah N, Wang C, Magrini V, Wilson RK, Cantarel BL, Coutinho PM, Henrissat B, Crock LW, Russell A, et al. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proceedings of the National Academy of Sciences of the United States of America. 106: 5859-64. PMID 19321416 DOI: 10.1073/Pnas.0901529106  0.802
2009 Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. A core gut microbiome in obese and lean twins. Nature. 457: 480-4. PMID 19043404 DOI: 10.1038/Nature07540  0.822
2008 Turnbaugh PJ, Gordon JI. An invitation to the marriage of metagenomics and metabolomics. Cell. 134: 708-13. PMID 18775300 DOI: 10.1016/J.Cell.2008.08.025  0.566
2008 Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, Bircher JS, Schlegel ML, Tucker TA, Schrenzel MD, Knight R, Gordon JI. Evolution of mammals and their gut microbes. Science (New York, N.Y.). 320: 1647-51. PMID 18497261 DOI: 10.1126/Science.1155725  0.64
2008 Turnbaugh PJ, Bäckhed F, Fulton L, Gordon JI. Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host & Microbe. 3: 213-23. PMID 18407065 DOI: 10.1016/J.Chom.2008.02.015  0.596
2008 Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. Host-bacterial coevolution and the search for new drug targets. Current Opinion in Chemical Biology. 12: 109-14. PMID 18280814 DOI: 10.1016/J.Cbpa.2008.01.015  0.575
2007 Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The human microbiome project. Nature. 449: 804-10. PMID 17943116 DOI: 10.1038/Nature06244  0.535
2006 Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 444: 1027-31. PMID 17183312 DOI: 10.1038/Nature05414  0.768
2006 Ley RE, Turnbaugh PJ, Klein S, Gordon JI. Microbial ecology: human gut microbes associated with obesity. Nature. 444: 1022-3. PMID 17183309 DOI: 10.1038/4441022A  0.537
2006 Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE. Metagenomic analysis of the human distal gut microbiome. Science (New York, N.Y.). 312: 1355-9. PMID 16741115 DOI: 10.1126/Science.1124234  0.772
2005 Gertz J, Riles L, Turnbaugh P, Ho SW, Cohen BA. Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics. Genome Research. 15: 1145-52. PMID 16077013 DOI: 10.1101/Gr.3859605  0.307
2005 Ley RE, Bäckhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. Obesity alters gut microbial ecology. Proceedings of the National Academy of Sciences of the United States of America. 102: 11070-5. PMID 16033867 DOI: 10.1073/Pnas.0504978102  0.642
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