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Jesse R. Zaneveld, Ph.D. - Publications

Affiliations: 
2011 Molecular, Cellular and Developmental Biology University of Colorado, Boulder, Boulder, CO, United States 
Area:
Bioinformatics Biology, Microbiology Biology, Evolution and Development Biology
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Pollock FJ, McMinds R, Smith S, Bourne DG, Willis BL, Medina M, Thurber RV, Zaneveld JR. Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny. Nature Communications. 9: 4921. PMID 30467310 DOI: 10.1038/S41467-018-07275-X  0.448
2018 Trinh P, Zaneveld JR, Safranek S, Rabinowitz PM. One Health Relationships Between Human, Animal, and Environmental Microbiomes: A Mini-Review. Frontiers in Public Health. 6: 235. PMID 30214898 DOI: 10.3389/Fpubh.2018.00235  0.338
2018 Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, ... ... Zaneveld JR, et al. Best practices for analysing microbiomes. Nature Reviews. Microbiology. PMID 29795328 DOI: 10.1038/S41579-018-0029-9  0.342
2017 Zaneveld JR, McMinds R, Vega Thurber R. Stress and stability: applying the Anna Karenina principle to animal microbiomes. Nature Microbiology. 2: 17121. PMID 28836573 DOI: 10.1038/Nmicrobiol.2017.121  0.316
2017 Welsh RM, Rosales SM, Zaneveld JR, Payet JP, McMinds R, Hubbs SL, Vega Thurber RL. Alien vs. predator: bacterial challenge alters coral microbiomes unless controlled by Halobacteriovorax predators. Peerj. 5: e3315. PMID 28584701 DOI: 10.7717/Peerj.3315  0.414
2017 Weiss S, Xu ZZ, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde ER, Knight R. Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome. 5: 27. PMID 28253908 DOI: 10.1186/S40168-017-0237-Y  0.354
2016 Zaneveld JR, Burkepile DE, Shantz AA, Pritchard CE, McMinds R, Payet JP, Welsh R, Correa AM, Lemoine NP, Rosales S, Fuchs C, Maynard JA, Thurber RV. Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales. Nature Communications. 7: 11833. PMID 27270557 DOI: 10.1038/Ncomms11833  0.33
2016 Lesser MP, Fiore C, Slattery M, Zaneveld J. Climate change stressors destabilize the microbiome of the Caribbean barrel sponge, Xestospongia muta Journal of Experimental Marine Biology and Ecology. 475: 11-18. DOI: 10.1016/J.Jembe.2015.11.004  0.334
2015 Welsh RM, Zaneveld JR, Rosales SM, Payet JP, Burkepile DE, Thurber RV. Bacterial predation in a marine host-associated microbiome. The Isme Journal. PMID 26613338 DOI: 10.1038/Ismej.2015.219  0.418
2015 Soffer N, Zaneveld J, Thurber RV. Phage-bacteria network analysis and its implication for the understanding of coral disease. Environmental Microbiology. 17: 1203-1218. PMID 25039472 DOI: 10.1111/1462-2920.12553  0.384
2013 Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature Biotechnology. 31: 814-21. PMID 23975157 DOI: 10.1038/Nbt.2676  0.415
2012 Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R. Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Research. 22: 1974-84. PMID 22665442 DOI: 10.1101/Gr.138198.112  0.418
2012 Fierer N, Lauber CL, Ramirez KS, Zaneveld J, Bradford MA, Knight R. Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients. The Isme Journal. 6: 1007-17. PMID 22134642 DOI: 10.1038/Ismej.2011.159  0.391
2011 Knights D, Parfrey LW, Zaneveld J, Lozupone C, Knight R. Human-associated microbial signatures: Examining their predictive value Cell Host and Microbe. 10: 292-296. PMID 22018228 DOI: 10.1016/J.Chom.2011.09.003  0.403
2011 Knights D, Kuczynski J, Charlson ES, Zaneveld J, Mozer MC, Collman RG, Bushman FD, Knight R, Kelley ST. Bayesian community-wide culture-independent microbial source tracking Nature Methods. 8: 761-765. PMID 21765408 DOI: 10.1038/Nmeth.1650  0.354
2011 Hansen EE, Lozupone CA, Rey FE, Wu M, Guruge JL, Narra A, Goodfellow J, Zaneveld JR, McDonald DT, Goodrich JA, Heath AC, Knight R, Gordon JI. Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins. Proceedings of the National Academy of Sciences of the United States of America. 108: 4599-606. PMID 21317366 DOI: 10.1073/Pnas.1000071108  0.342
2010 Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R. Direct sequencing of the human microbiome readily reveals community differences. Genome Biology. 11: 210. PMID 20441597 DOI: 10.1186/Gb-2010-11-5-210  0.372
2010 Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, ... ... Zaneveld J, et al. QIIME allows analysis of high-throughput community sequencing data. Nature Methods. 7: 335-6. PMID 20383131 DOI: 10.1038/Nmeth.F.303  0.356
2010 Zaneveld JR, Lozupone C, Gordon JI, Knight R. Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives. Nucleic Acids Research. 38: 3869-79. PMID 20197316 DOI: 10.1093/Nar/Gkq066  0.423
2009 Zaneveld J, Hamady M, Sueoka N, Knight R. CodonExplorer: an interactive online database for the analysis of codon usage and sequence composition. Methods in Molecular Biology (Clifton, N.J.). 537: 207-32. PMID 19378146 DOI: 10.1007/978-1-59745-251-9_10  0.345
2008 Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. Host-bacterial coevolution and the search for new drug targets. Current Opinion in Chemical Biology. 12: 109-14. PMID 18280814 DOI: 10.1016/J.Cbpa.2008.01.015  0.398
2008 Zaneveld JR, Nemergut DR, Knight R. Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns. Microbiology (Reading, England). 154: 1-15. PMID 18174121 DOI: 10.1099/Mic.0.2007/011833-0  0.32
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