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Naama Barkai - Publications

Affiliations: 
Weizmann Institute of Science, Rehovot, Israel 
Area:
Molecular Biology, Biochemistry
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121 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Jonas F, Vidavski M, Benuck E, Barkai N, Yaakov G. Nucleosome retention by histone chaperones and remodelers occludes pervasive DNA-protein binding. Nucleic Acids Research. 51: 8496-8513. PMID 37493599 DOI: 10.1093/nar/gkad615  0.33
2023 Kumar DK, Jonas F, Jana T, Brodsky S, Carmi M, Barkai N. Complementary strategies for directing in vivo transcription factor binding through DNA binding domains and intrinsically disordered regions. Molecular Cell. PMID 37116493 DOI: 10.1016/j.molcel.2023.04.002  0.8
2023 Jonas F, Carmi M, Krupkin B, Steinberger J, Brodsky S, Jana T, Barkai N. The molecular grammar of protein disorder guiding genome-binding locations. Nucleic Acids Research. PMID 36938874 DOI: 10.1093/nar/gkad184  0.782
2022 David Y, Castro IG, Yifrach E, Bibi C, Katawi E, Yahav Har-Shai D, Brodsky S, Barkai N, Ravid T, Eisenstein M, Pietrokovski S, Schuldiner M, Zalckvar E. Pls1 Is a Peroxisomal Matrix Protein with a Role in Regulating Lysine Biosynthesis. Cells. 11. PMID 35563734 DOI: 10.3390/cells11091426  0.771
2022 Gera T, Jonas F, More R, Barkai N. Evolution of binding preferences among whole-genome duplicated transcription factors. Elife. 11. PMID 35404235 DOI: 10.7554/eLife.73225  0.312
2021 Brodsky S, Jana T, Barkai N. Order through disorder: The role of intrinsically disordered regions in transcription factor binding specificity. Current Opinion in Structural Biology. 71: 110-115. PMID 34303077 DOI: 10.1016/j.sbi.2021.06.011  0.807
2021 Lupo O, Krieger G, Jonas F, Barkai N. Accumulation of cis- and trans-regulatory variations is associated with phenotypic divergence of a complex trait between yeast species. G3 (Bethesda, Md.). 11. PMID 33609368 DOI: 10.1093/g3journal/jkab016  0.317
2021 Jana T, Brodsky S, Barkai N. Speed-Specificity Trade-Offs in the Transcription Factors Search for Their Genomic Binding Sites. Trends in Genetics : Tig. PMID 33414013 DOI: 10.1016/j.tig.2020.12.001  0.811
2020 Metzl-Raz E, Kafri M, Yaakov G, Barkai N. Gene Transcription as a Limiting Factor in Protein Production and Cell Growth. G3 (Bethesda, Md.). PMID 32694199 DOI: 10.1534/g3.120.401303  0.339
2020 Brodsky S, Jana T, Mittelman K, Chapal M, Kumar DK, Carmi M, Barkai N. Intrinsically Disordered Regions Direct Transcription Factor In Vivo Binding Specificity. Molecular Cell. PMID 32553192 DOI: 10.1016/J.Molcel.2020.05.032  0.767
2020 Bar-Ziv R, Brodsky S, Chapal M, Barkai N. Transcription Factor Binding to Replicated DNA. Cell Reports. 30: 3989-3995.e4. PMID 32209462 DOI: 10.1016/J.Celrep.2020.02.114  0.775
2020 Rahimi N, Carmon S, Averbukh I, Khajouei F, Sinha S, Schejter ED, Barkai N, Shilo BZ. Global shape of Toll activation is determined by enhancer properties. Proceedings of the National Academy of Sciences of the United States of America. PMID 31900360 DOI: 10.1073/Pnas.1918268117  0.352
2019 Chapal M, Mintzer S, Brodsky S, Carmi M, Barkai N. Resolving noise-control conflict by gene duplication. Plos Biology. 17: e3000289. PMID 31756183 DOI: 10.1371/Journal.Pbio.3000289  0.785
2019 Rahimi N, Averbukh I, Carmon S, Schejter ED, Barkai N, Shilo BZ. Dynamics of Spaetzle morphogen shuttling in the embryo shapes gastrulation patterning. Development (Cambridge, England). 146. PMID 31719046 DOI: 10.1242/Dev.181487  0.304
2019 Hamilton WB, Mosesson Y, Monteiro RS, Emdal KB, Knudsen TE, Francavilla C, Barkai N, Olsen JV, Brickman JM. Dynamic lineage priming is driven via direct enhancer regulation by ERK. Nature. PMID 31695196 DOI: 10.1038/S41586-019-1732-Z  0.409
2019 Teufel L, Tummler K, Flöttmann M, Herrmann A, Barkai N, Klipp E. A transcriptome-wide analysis deciphers distinct roles of G1 cyclins in temporal organization of the yeast cell cycle. Scientific Reports. 9: 3343. PMID 30833602 DOI: 10.1038/S41598-019-39850-7  0.391
2018 Jonas F, Soifer I, Barkai N. A Visual Framework for Classifying Determinants of Cell Size. Cell Reports. 25: 3519-3529.e2. PMID 30566874 DOI: 10.1016/J.Celrep.2018.11.087  0.72
2018 Voichek Y, Mittelman K, Gordon Y, Bar-Ziv R, Lifshitz Smit D, Shenhav R, Barkai N. Epigenetic Control of Expression Homeostasis during Replication Is Stabilized by the Replication Checkpoint. Molecular Cell. 70: 1121-1133.e9. PMID 29910110 DOI: 10.1016/J.Molcel.2018.05.015  0.818
2018 Yaakov G, Barkai N. Balancing robustness and evolvability in single cells and beyond Current Opinion in Systems Biology. 8: 125-130. DOI: 10.1016/J.Coisb.2018.02.008  0.349
2017 Gurvich Y, Leshkowitz D, Barkai N. Dual role of starvation signaling in promoting growth and recovery. Plos Biology. 15: e2002039. PMID 29236696 DOI: 10.1371/Journal.Pbio.2002039  0.329
2017 Cao J, Packer J, Waterston R, Trapnell C, Shendure J, Rajaram S, Wu LF, Altschuler SJ, Liang J, O'Brien LE, Eizenberg-Magar I, Rimer J, Friedman N, Metzl-Raz E, Kafri M, ... ... Barkai N, et al. Principles of Systems Biology, No. 21 : Editorial Cell Systems. 5: 158-160. PMID 28957648 DOI: 10.1016/J.Cels.2017.09.005  0.692
2017 Metzl-Raz E, Kafri M, Yaakov G, Soifer I, Gurvich Y, Barkai N. Principles of cellular resource allocation revealed by condition-dependent proteome profiling. Elife. 6. PMID 28857745 DOI: 10.7554/Elife.28034  0.726
2017 Herbst RH, Bar-Zvi D, Reikhav S, Soifer I, Breker M, Jona G, Shimoni E, Schuldiner M, Levy AA, Barkai N. Heterosis as a consequence of regulatory incompatibility. Bmc Biology. 15: 38. PMID 28494792 DOI: 10.1186/S12915-017-0373-7  0.731
2017 Metzl-Raz E, Kafri M, Yaakov G, Soifer I, Gurvich Y, Barkai N. Author response: Principles of cellular resource allocation revealed by condition-dependent proteome profiling Elife. DOI: 10.7554/Elife.28034.022  0.702
2017 Fainsod A, Leibovich A, Leibovich-Kot H, Ben-Zvi D, Barkai N. Expansion-restriction of Spemann's organizer by an ADMP self-regulatory switch to scale the BMP gradient Mechanisms of Development. 145: S76. DOI: 10.1016/J.Mod.2017.04.180  0.608
2016 Gispan A, Carmi M, Barkai N. Model-based analysis of DNA replication profiles: Predicting replication fork velocity and initiation rate by profiling free-cycling cells. Genome Research. PMID 28028072 DOI: 10.1101/Gr.205849.116  0.377
2016 Kafri M, Metzl-Raz E, Jonas F, Barkai N. Rethinking cell growth models. Fems Yeast Research. PMID 27650704 DOI: 10.1093/Femsyr/Fow081  0.318
2016 Bar-Ziv R, Voichek Y, Barkai N. Dealing with Gene-Dosage Imbalance during S Phase. Trends in Genetics : Tig. PMID 27575299 DOI: 10.1016/J.Tig.2016.08.006  0.81
2016 Voichek Y, Bar-Ziv R, Barkai N. A role for Rtt109 in buffering gene-dosage imbalance during DNA replication. Nucleus (Austin, Tex.). 0. PMID 27485376 DOI: 10.1080/19491034.2016.1216743  0.805
2016 Bar-Ziv R, Voichek Y, Barkai N. Chromatin dynamics during DNA replication. Genome Research. PMID 27225843 DOI: 10.1101/Gr.201244.115  0.792
2016 Voichek Y, Bar-Ziv R, Barkai N. Expression homeostasis during DNA replication. Science (New York, N.Y.). 351: 1087-90. PMID 26941319 DOI: 10.1126/Science.Aad1162  0.815
2016 Rahimi N, Averbukh I, Haskel-Ittah M, Degani N, Schejter ED, Barkai N, Shilo BZ. A WntD-Dependent Integral Feedback Loop Attenuates Variability in Drosophila Toll Signaling. Developmental Cell. 36: 401-14. PMID 26906736 DOI: 10.1016/J.Devcel.2016.01.023  0.329
2016 Gavish A, Barkai N. A two-step patterning process increases the robustness of periodic patterning in the fly eye. Journal of Biological Physics. PMID 26884095 DOI: 10.1007/S10867-016-9409-4  0.313
2016 Tamari Z, Barkai N. Natural Diversity in Pentose Fermentation Is Explained by Variations in Histone Deacetylases. Cell Reports. 14: 458-63. PMID 26774473 DOI: 10.1016/J.Celrep.2015.12.048  0.327
2016 Kafri M, Metzl-Raz E, Jona G, Barkai N. The Cost of Protein Production. Cell Reports. 14: 22-31. PMID 26725116 DOI: 10.1016/J.Celrep.2015.12.015  0.347
2015 Shilo S, Melamed-Bessudo C, Dorone Y, Barkai N, Levy AA. DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis. The Plant Cell. 27: 2427-36. PMID 26381163 DOI: 10.1105/Tpc.15.00391  0.381
2015 Yanagida H, Gispan A, Kadouri N, Rozen S, Sharon M, Barkai N, Tawfik DS. The Evolutionary Potential of Phenotypic Mutations. Plos Genetics. 11: e1005445. PMID 26244544 DOI: 10.1371/Journal.Pgen.1005445  0.322
2014 Schmidt-Glenewinkel H, Barkai N. Loss of growth homeostasis by genetic decoupling of cell division from biomass growth: implication for size control mechanisms. Molecular Systems Biology. 10: 769. PMID 25538138 DOI: 10.15252/Msb.20145513  0.307
2014 Vardi N, Levy S, Gurvich Y, Polacheck T, Carmi M, Jaitin D, Amit I, Barkai N. Sequential feedback induction stabilizes the phosphate starvation response in budding yeast. Cell Reports. 9: 1122-34. PMID 25437565 DOI: 10.1016/J.Celrep.2014.10.002  0.801
2014 Soifer I, Barkai N. Systematic identification of cell size regulators in budding yeast. Molecular Systems Biology. 10: 761. PMID 25411401 DOI: 10.15252/Msb.20145345  0.725
2014 Gispan A, Carmi M, Barkai N. Checkpoint-independent scaling of the Saccharomyces cerevisiae DNA replication program. Bmc Biology. 12: 79. PMID 25288172 DOI: 10.1186/S12915-014-0079-Z  0.373
2014 Mosesson Y, Voichek Y, Barkai N. Divergence and selectivity of expression-coupled histone modifications in budding yeasts. Plos One. 9: e101538. PMID 25007273 DOI: 10.1371/Journal.Pone.0101538  0.795
2014 Averbukh I, Ben-Zvi D, Mishra S, Barkai N. Scaling morphogen gradients during tissue growth by a cell division rule. Development (Cambridge, England). 141: 2150-6. PMID 24803660 DOI: 10.1242/Dev.107011  0.636
2014 Tamari Z, Rosin D, Voichek Y, Barkai N. Coordination of gene expression and growth-rate in natural populations of budding yeast. Plos One. 9: e88801. PMID 24533150 DOI: 10.1371/Journal.Pone.0088801  0.788
2014 Ben-Zvi D, Fainsod A, Shilo BZ, Barkai N. Scaling of dorsal-ventral patterning in the Xenopus laevis embryo. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 36: 151-6. PMID 24323952 DOI: 10.1002/Bies.201300136  0.627
2013 Vardi N, Levy S, Assaf M, Carmi M, Barkai N. Budding yeast escape commitment to the phosphate starvation program using gene expression noise. Current Biology : Cb. 23: 2051-7. PMID 24094854 DOI: 10.1016/J.Cub.2013.08.043  0.806
2013 Avraham N, Soifer I, Carmi M, Barkai N. Increasing population growth by asymmetric segregation of a limiting resource during cell division. Molecular Systems Biology. 9: 656. PMID 23591772 DOI: 10.1038/Msb.2013.13  0.728
2013 Shilo BZ, Haskel-Ittah M, Ben-Zvi D, Schejter ED, Barkai N. Creating gradients by morphogen shuttling. Trends in Genetics : Tig. 29: 339-47. PMID 23369355 DOI: 10.1016/J.Tig.2013.01.001  0.64
2013 Barkai N, Shilo BZ. Developmental biology: Segmentation within scale. Nature. 493: 32-4. PMID 23254932 DOI: 10.1038/Nature11849  0.359
2013 Gitter A, Carmi M, Barkai N, Bar-Joseph Z. Linking the signaling cascades and dynamic regulatory networks controlling stress responses. Genome Research. 23: 365-76. PMID 23064748 DOI: 10.1101/Gr.138628.112  0.332
2012 Tamari Z, Barkai N. Improved readout precision of the Bicoid morphogen gradient by early decoding. Journal of Biological Physics. 38: 317-29. PMID 23449375 DOI: 10.1007/S10867-011-9250-8  0.448
2012 Haskel-Ittah M, Ben-Zvi D, Branski-Arieli M, Schejter ED, Shilo BZ, Barkai N. Self-organized shuttling: generating sharp dorsoventral polarity in the early Drosophila embryo. Cell. 150: 1016-28. PMID 22939625 DOI: 10.1016/J.Cell.2012.06.044  0.618
2012 Hornung G, Bar-Ziv R, Rosin D, Tokuriki N, Tawfik DS, Oren M, Barkai N. Noise-mean relationship in mutated promoters. Genome Research. 22: 2409-17. PMID 22820945 DOI: 10.1101/Gr.139378.112  0.752
2012 Weinberger L, Voichek Y, Tirosh I, Hornung G, Amit I, Barkai N. Expression noise and acetylation profiles distinguish HDAC functions. Molecular Cell. 47: 193-202. PMID 22683268 DOI: 10.1016/J.Molcel.2012.05.008  0.784
2012 Barad O, Mann M, Chapnik E, Shenoy A, Blelloch R, Barkai N, Hornstein E. Efficiency and specificity in microRNA biogenesis. Nature Structural & Molecular Biology. 19: 650-2. PMID 22580560 DOI: 10.1038/Nsmb.2293  0.73
2012 Hornung G, Oren M, Barkai N. Nucleosome organization affects the sensitivity of gene expression to promoter mutations. Molecular Cell. 46: 362-8. PMID 22464732 DOI: 10.1016/J.Molcel.2012.02.019  0.375
2012 Rosin D, Hornung G, Tirosh I, Gispan A, Barkai N. Promoter nucleosome organization shapes the evolution of gene expression. Plos Genetics. 8: e1002579. PMID 22438828 DOI: 10.1371/Journal.Pgen.1002579  0.412
2011 Tamari Z, Barkai N, Fouxon I. Physical aspects of precision in genetic regulation. Journal of Biological Physics. 37: 213-25. PMID 22379230 DOI: 10.1007/S10867-010-9208-2  0.347
2011 Levy S, Kafri M, Carmi M, Barkai N. The competitive advantage of a dual-transporter system. Science (New York, N.Y.). 334: 1408-12. PMID 22158820 DOI: 10.1126/Science.1207154  0.766
2011 Barad O, Hornstein E, Barkai N. Robust selection of sensory organ precursors by the Notch-Delta pathway. Current Opinion in Cell Biology. 23: 663-7. PMID 21963301 DOI: 10.1016/J.Ceb.2011.09.005  0.748
2011 Tirosh I, Wong KH, Barkai N, Struhl K. Extensive divergence of yeast stress responses through transitions between induced and constitutive activation. Proceedings of the National Academy of Sciences of the United States of America. 108: 16693-8. PMID 21930916 DOI: 10.1073/Pnas.1113718108  0.313
2011 Tirosh I, Barkai N. Inferring regulatory mechanisms from patterns of evolutionary divergence. Molecular Systems Biology. 7: 530. PMID 21915117 DOI: 10.1038/Msb.2011.60  0.358
2011 Tsui K, Dubuis S, Gebbia M, Morse RH, Barkai N, Tirosh I, Nislow C. Evolution of nucleosome occupancy: conservation of global properties and divergence of gene-specific patterns. Molecular and Cellular Biology. 31: 4348-55. PMID 21896781 DOI: 10.1128/Mcb.05276-11  0.408
2011 Ben-Zvi D, Shilo BZ, Barkai N. Scaling of morphogen gradients. Current Opinion in Genetics & Development. 21: 704-10. PMID 21873045 DOI: 10.1016/J.Gde.2011.07.011  0.629
2011 Ben-Zvi D, Pyrowolakis G, Barkai N, Shilo BZ. Expansion-repression mechanism for scaling the Dpp activation gradient in Drosophila wing imaginal discs. Current Biology : Cb. 21: 1391-6. PMID 21835621 DOI: 10.1016/J.Cub.2011.07.015  0.638
2011 Afek Y, Alon N, Barad O, Hornstein E, Barkai N, Bar-Joseph Z. A biological solution to a fundamental distributed computing problem. Science (New York, N.Y.). 331: 183-5. PMID 21233379 DOI: 10.1126/Science.1193210  0.729
2011 Koren A, Tsai H, Tirosh I, Burrack LS, Barkai N, Berman J. Correction: Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase Plos Genetics. 7. DOI: 10.1371/Annotation/2Aba8D24-7A24-4Bbc-91F7-9B9E228Cc84D  0.561
2011 Koren A, Tsai H, Tirosh I, Burrack LS, Barkai N, Berman J. Correction: Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase Plos Genetics. 7. DOI: 10.1371/annotation/2aba8d24-7a24-4bbc-91f7-9b9e228cc84d  0.539
2011 Leibovich A, Ben-Zvi D, Barkai N, Fainsod A. A role for ADMP in scaling of embryonic tissues to generate equally proportioned embryos Developmental Biology. 356: 211. DOI: 10.1016/J.Ydbio.2011.05.318  0.596
2010 Tirosh I, Reikhav S, Sigal N, Assia Y, Barkai N. Chromatin regulators as capacitors of interspecies variations in gene expression. Molecular Systems Biology. 6: 435. PMID 21119629 DOI: 10.1038/Msb.2010.84  0.403
2010 Koren A, Tsai HJ, Tirosh I, Burrack LS, Barkai N, Berman J. Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. Plos Genetics. 6: e1001068. PMID 20808889 DOI: 10.1371/Journal.Pgen.1001068  0.619
2010 Barad O, Rosin D, Hornstein E, Barkai N. Error minimization in lateral inhibition circuits. Science Signaling. 3: ra51. PMID 20606215 DOI: 10.1126/Scisignal.2000857  0.745
2010 Tirosh I, Sigal N, Barkai N. Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences. Molecular Systems Biology. 6: 365. PMID 20461072 DOI: 10.1038/Msb.2010.20  0.384
2010 Tirosh I, Sigal N, Barkai N. Widespread remodeling of mid-coding sequence nucleosomes by Isw1. Genome Biology. 11: R49. PMID 20459718 DOI: 10.1186/Gb-2010-11-5-R49  0.404
2010 Ben-Zvi D, Barkai N. Scaling of morphogen gradients by an expansion-repression integral feedback control. Proceedings of the National Academy of Sciences of the United States of America. 107: 6924-9. PMID 20356830 DOI: 10.1073/Pnas.0912734107  0.637
2010 Koren A, Soifer I, Barkai N. MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Research. 20: 781-90. PMID 20219942 DOI: 10.1101/Gr.102764.109  0.789
2010 Geijer C, Joseph-Strauss D, Simchen G, Barkai N, Hohmann S. Saccharomyces cerevisiae spore germination Topics in Current Genetics. 21: 29-41. DOI: 10.1007/978-3-642-12422-8_3  0.793
2009 Barkai N, Shilo BZ. Robust generation and decoding of morphogen gradients. Cold Spring Harbor Perspectives in Biology. 1: a001990. PMID 20066119 DOI: 10.1101/Cshperspect.A001990  0.404
2009 Tirosh I, Barkai N, Verstrepen KJ. Promoter architecture and the evolvability of gene expression. Journal of Biology. 8: 95. PMID 20017897 DOI: 10.1186/Jbiol204  0.407
2009 Levy S, Barkai N. Coordination of gene expression with growth rate: a feedback or a feed-forward strategy? Febs Letters. 583: 3974-8. PMID 19878679 DOI: 10.1016/J.Febslet.2009.10.071  0.796
2009 Doncic A, Ben-Jacob E, Einav S, Barkai N. Reverse engineering of the spindle assembly checkpoint. Plos One. 4: e6495. PMID 19652707 DOI: 10.1371/Journal.Pone.0006495  0.32
2009 Tirosh I, Reikhav S, Levy AA, Barkai N. A yeast hybrid provides insight into the evolution of gene expression regulation. Science (New York, N.Y.). 324: 659-62. PMID 19407207 DOI: 10.1126/Science.1169766  0.359
2009 Barkai N, Ben-Zvi D. 'Big frog, small frog'--maintaining proportions in embryonic development: delivered on 2 July 2008 at the 33rd FEBS Congress in Athens, Greece. The Febs Journal. 276: 1196-207. PMID 19175672 DOI: 10.1111/J.1742-4658.2008.06854.X  0.632
2009 Ben-Zvi D, Shilo BZ, Fainsod A, Barkai N. Reply to Francois et al Nature. 461. DOI: 10.1038/Nature08306  0.574
2009 Ben-Zvi D, Fainsod A, Shilo B, Barkai N. Scaling of the Bmp morphogen gradient in Xenopus embryos Developmental Biology. 331: 425. DOI: 10.1016/J.Ydbio.2009.05.137  0.598
2008 Ben-Zvi D, Shilo BZ, Fainsod A, Barkai N. Scaling of the BMP activation gradient in Xenopus embryos. Nature. 453: 1205-11. PMID 18580943 DOI: 10.1038/Nature07059  0.637
2008 Tirosh I, Barkai N. Two strategies for gene regulation by promoter nucleosomes. Genome Research. 18: 1084-91. PMID 18448704 DOI: 10.1101/Gr.076059.108  0.426
2008 Tirosh I, Barkai N. Evolution of gene sequence and gene expression are not correlated in yeast. Trends in Genetics : Tig. 24: 109-13. PMID 18249461 DOI: 10.1016/J.Tig.2007.12.004  0.365
2008 Tirosh I, Weinberger A, Bezalel D, Kaganovich M, Barkai N. On the relation between promoter divergence and gene expression evolution. Molecular Systems Biology. 4: 159. PMID 18197176 DOI: 10.1038/Msb4100198  0.431
2007 Joseph-Strauss D, Zenvirth D, Simchen G, Barkai N. Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks. Genome Biology. 8: R241. PMID 17999778 DOI: 10.1186/Gb-2007-8-11-R241  0.801
2007 Tirosh I, Bilu Y, Barkai N. Comparative biology: beyond sequence analysis. Current Opinion in Biotechnology. 18: 371-7. PMID 17693073 DOI: 10.1016/J.Copbio.2007.07.003  0.332
2007 Koren A, Tirosh I, Barkai N. Autocorrelation analysis reveals widespread spatial biases in microarray experiments. Bmc Genomics. 8: 164. PMID 17565680 DOI: 10.1186/1471-2164-8-164  0.599
2007 Tirosh I, Berman J, Barkai N. The pattern and evolution of yeast promoter bendability. Trends in Genetics : Tig. 23: 318-21. PMID 17418911 DOI: 10.1016/J.Tig.2007.03.015  0.4
2007 Tirosh I, Barkai N. Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biology. 8: R50. PMID 17411427 DOI: 10.1186/Gb-2007-8-4-R50  0.363
2007 Levy S, Ihmels J, Carmi M, Weinberger A, Friedlander G, Barkai N. Strategy of transcription regulation in the budding yeast Plos One. 2. PMID 17327914 DOI: 10.1371/Journal.Pone.0000250  0.809
2007 Bergmann S, Sandler O, Sberro H, Shnider S, Schejter E, Shilo BZ, Barkai N. Pre-steady-state decoding of the Bicoid morphogen gradient. Plos Biology. 5: e46. PMID 17298180 DOI: 10.1371/Journal.Pbio.0050046  0.334
2006 Bilu Y, Shlomi T, Barkai N, Ruppin E. Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states. Plos Computational Biology. 2: e106. PMID 16933982 DOI: 10.1371/Journal.Pcbi.0020106  0.375
2006 Reiner O, Coquelle FM, Peter B, Levy T, Kaplan A, Sapir T, Orr I, Barkai N, Eichele G, Bergmann S. The evolving doublecortin (DCX) superfamily. Bmc Genomics. 7: 188. PMID 16869982 DOI: 10.1186/1471-2164-7-188  0.35
2006 Tirosh I, Weinberger A, Carmi M, Barkai N. A genetic signature of interspecies variations in gene expression. Nature Genetics. 38: 830-4. PMID 16783381 DOI: 10.1038/Ng1819  0.405
2006 Doncic A, Ben-Jacob E, Barkai N. Noise resistance in the spindle assembly checkpoint. Molecular Systems Biology. 2: 2006.0027. PMID 16738571 DOI: 10.1038/Msb4100070  0.368
2006 Bar-Even A, Paulsson J, Maheshri N, Carmi M, O'Shea E, Pilpel Y, Barkai N. Noise in protein expression scales with natural protein abundance. Nature Genetics. 38: 636-43. PMID 16715097 DOI: 10.1038/Ng1807  0.659
2006 Coquelle FM, Levy T, Bergmann S, Wolf SG, Bar-El D, Sapir T, Brody Y, Orr I, Barkai N, Eichele G, Reiner O. Common and divergent roles for members of the mouse DCX superfamily. Cell Cycle (Georgetown, Tex.). 5: 976-83. PMID 16628014 DOI: 10.4161/Cc.5.9.2715  0.326
2006 Friedlander G, Joseph-Strauss D, Carmi M, Zenvirth D, Simchen G, Barkai N. Modulation of the transcription regulatory program in yeast cells committed to sporulation Genome Biology. 7. PMID 16542486 DOI: 10.1186/Gb-2006-7-3-R20  0.803
2005 Melen GJ, Levy S, Barkai N, Shilo BZ. Threshold responses to morphogen gradients by zero-order ultrasensitivity. Molecular Systems Biology. 1: 2005.0028. PMID 16729063 DOI: 10.1038/Msb4100036  0.771
2005 Ihmels J, Bergmann S, Berman J, Barkai N. Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program. Plos Genetics. 1: e39. PMID 16470937 DOI: 10.1371/Journal.Pgen.0010039  0.403
2005 Bilu Y, Barkai N. The design of transcription-factor binding sites is affected by combinatorial regulation. Genome Biology. 6: R103. PMID 16356266 DOI: 10.1186/Gb-2005-6-12-R103  0.413
2005 Ihmels J, Bergmann S, Gerami-Nejad M, Yanai I, McClellan M, Berman J, Barkai N. Rewiring of the yeast transcriptional network through the evolution of motif usage. Science (New York, N.Y.). 309: 938-40. PMID 16081737 DOI: 10.1126/Science.1113833  0.42
2005 Rappaport N, Winter S, Barkai N. The ups and downs of biological timers. Theoretical Biology & Medical Modelling. 2: 22. PMID 15967029 DOI: 10.1186/1742-4682-2-22  0.301
2005 Doncic A, Ben-Jacob E, Barkai N. Evaluating putative mechanisms of the mitotic spindle checkpoint. Proceedings of the National Academy of Sciences of the United States of America. 102: 6332-7. PMID 15851663 DOI: 10.1073/Pnas.0409142102  0.302
2005 Eldar A, Barkai N. Interpreting clone-mediated perturbations of morphogen profiles. Developmental Biology. 278: 203-7. PMID 15649472 DOI: 10.1016/J.Ydbio.2004.11.002  0.35
2004 Eldar A, Shilo BZ, Barkai N. Elucidating mechanisms underlying robustness of morphogen gradients. Current Opinion in Genetics & Development. 14: 435-9. PMID 15261661 DOI: 10.1016/J.Gde.2004.06.009  0.335
2004 Ihmels J, Bergmann S, Barkai N. Defining transcription modules using large-scale gene expression data. Bioinformatics (Oxford, England). 20: 1993-2003. PMID 15044247 DOI: 10.1093/Bioinformatics/Bth166  0.341
2004 Bergmann S, Ihmels J, Barkai N. Similarities and differences in genome-wide expression data of six organisms. Plos Biology. 2: E9. PMID 14737187 DOI: 10.1371/Journal.Pbio.0020009  0.38
2004 Ihmels J, Levy R, Barkai N. Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nature Biotechnology. 22: 86-92. PMID 14647306 DOI: 10.1038/Nbt918  0.322
2003 Bergmann S, Ihmels J, Barkai N. Iterative signature algorithm for the analysis of large-scale gene expression data. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 031902. PMID 12689096 DOI: 10.1103/Physreve.67.031902  0.355
2002 Vilar JM, Kueh HY, Barkai N, Leibler S. Mechanisms of noise-resistance in genetic oscillators. Proceedings of the National Academy of Sciences of the United States of America. 99: 5988-92. PMID 11972055 DOI: 10.1073/Pnas.092133899  0.554
2001 Barkai N, Alon U, Leibler S. Robust amplification in adaptive signal transduction networks Comptes Rendus De L'Academie Des Sciences - Series Iv: Physics, Astrophysics. 2: 871-877. DOI: 10.1016/S1296-2147(01)01230-6  0.546
2000 Barkai N, Leibler S. Circadian clocks limited by noise. Nature. 403: 267-8. PMID 10659837 DOI: 10.1038/35002258  0.538
1999 Alon U, Surette MG, Barkai N, Leibler S. Robustness in bacterial chemotaxis. Nature. 397: 168-71. PMID 9923680 DOI: 10.1038/16483  0.541
1998 Barkai N, Leibler S. Bacterial chemotaxis. United we sense... Nature. 393: 18-9, 21. PMID 9590684 DOI: 10.1038/29881  0.536
1997 Barkai N, Leibler S. Robustness in simple biochemical networks. Nature. 387: 913-7. PMID 9202124 DOI: 10.1038/43199  0.545
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