Yitzhak Pilpel - Publications

Weizmann Institute of Science, Rehovot, Israel 
Microbiology Biology, Cell Biology, Molecular Biology

43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Tamari Z, Yona AH, Pilpel Y, Barkai N. Rapid evolutionary adaptation to growth on an 'unfamiliar' carbon source. Bmc Genomics. 17: 674. PMID 27552923 DOI: 10.1186/s12864-016-3010-x  0.6
2016 Hoffman Y, Bublik DR, P Ugalde A, Elkon R, Biniashvili T, Agami R, Oren M, Pilpel Y. 3'UTR Shortening Potentiates MicroRNA-Based Repression of Pro-differentiation Genes in Proliferating Human Cells. Plos Genetics. 12: e1005879. PMID 26908102 DOI: 10.1371/journal.pgen.1005879  0.6
2015 Hoffman Y, Pilpel Y. Gene expression. MicroRNAs silence the noisy genome. Science (New York, N.Y.). 348: 41-2. PMID 25838367 DOI: 10.1126/science.aaa9841  0.6
2014 Gingold H, Tehler D, Christoffersen NR, Nielsen MM, Asmar F, Kooistra SM, Christophersen NS, Christensen LL, Borre M, Sørensen KD, Andersen LD, Andersen CL, Hulleman E, Wurdinger T, Ralfkiær E, ... ... Pilpel Y, et al. A dual program for translation regulation in cellular proliferation and differentiation. Cell. 158: 1281-92. PMID 25215487 DOI: 10.1016/j.cell.2014.08.011  0.6
2014 Hoffman Y, Pilpel Y, Oren M. microRNAs and Alu elements in the p53-Mdm2-Mdm4 regulatory network. Journal of Molecular Cell Biology. 6: 192-7. PMID 24868102 DOI: 10.1093/jmcb/mju020  0.6
2014 Hoffman Y, Bublik DR, Pilpel Y, Oren M. MiR-661 downregulates both Mdm2 and Mdm4 to activate p53 Cell Death and Differentiation. 21: 302-309. PMID 24141721 DOI: 10.1038/cdd.2013.146  0.6
2014 Minis A, Dahary D, Manor O, Leshkowitz D, Pilpel Y, Yaron A. Subcellular transcriptomics-dissection of the mRNA composition in the axonal compartment of sensory neurons. Developmental Neurobiology. 74: 365-81. PMID 24127433 DOI: 10.1002/dneu.22140  0.6
2013 Yona AH, Bloom-Ackermann Z, Frumkin I, Hanson-Smith V, Charpak-Amikam Y, Feng Q, Boeke JD, Dahan O, Pilpel Y. tRNA genes rapidly change in evolution to meet novel translational demands. Elife. 2: e01339. PMID 24363105 DOI: 10.7554/eLife.01339  0.6
2013 Shalem O, Carey L, Zeevi D, Sharon E, Keren L, Weinberger A, Dahan O, Pilpel Y, Segal E. Measurements of the impact of 3' end sequences on gene expression reveal wide range and sequence dependent effects. Plos Computational Biology. 9: e1002934. PMID 23505350 DOI: 10.1371/journal.pcbi.1002934  0.6
2013 Hoffman Y, Dahary D, Bublik DR, Oren M, Pilpel Y. The majority of endogenous microRNA targets within Alu elements avoid the microRNA machinery. Bioinformatics (Oxford, England). 29: 894-902. PMID 23361327 DOI: 10.1093/bioinformatics/btt044  0.6
2012 Ben-Yaakov K, Dagan SY, Segal-Ruder Y, Shalem O, Vuppalanchi D, Willis DE, Yudin D, Rishal I, Rother F, Bader M, Blesch A, Pilpel Y, Twiss JL, Fainzilber M. Axonal transcription factors signal retrogradely in lesioned peripheral nerve. The Embo Journal. 31: 1350-63. PMID 22246183 DOI: 10.1038/emboj.2011.494  0.6
2011 Limor-Waisberg K, Carmi A, Scherz A, Pilpel Y, Furman I. Specialization versus adaptation: two strategies employed by cyanophages to enhance their translation efficiencies. Nucleic Acids Research. 39: 6016-28. PMID 21470965 DOI: 10.1093/nar/gkr169  0.6
2010 Michaelevski I, Segal-Ruder Y, Rozenbaum M, Medzihradszky KF, Shalem O, Coppola G, Horn-Saban S, Ben-Yaakov K, Dagan SY, Rishal I, Geschwind DH, Pilpel Y, Burlingame AL, Fainzilber M. Signaling to transcription networks in the neuronal retrograde injury response. Science Signaling. 3: ra53. PMID 20628157 DOI: 10.1126/scisignal.2000952  0.6
2010 Avraham R, Sas-Chen A, Manor O, Steinfeld I, Shalgi R, Tarcic G, Bossel N, Zeisel A, Amit I, Zwang Y, Enerly E, Russnes HG, Biagioni F, Mottolese M, Strano S, ... ... Pilpel Y, et al. EGF decreases the abundance of microRNAs that restrain oncogenic transcription factors. Science Signaling. 3: ra43. PMID 20516477 DOI: 10.1126/scisignal.2000876  0.6
2010 Shen-Orr SS, Pilpel Y, Hunter CP. Composition and regulation of maternal and zygotic transcriptomes reflects species-specific reproductive mode. Genome Biology. 11: R58. PMID 20515465 DOI: 10.1186/gb-2010-11-6-r58  0.6
2010 Shalgi R, Pilpel Y, Oren M. Repression of transposable-elements - a microRNA anti-cancer defense mechanism? Trends in Genetics : Tig. 26: 253-9. PMID 20417576 DOI: 10.1016/j.tig.2010.03.006  0.6
2010 Tuller T, Carmi A, Vestsigian K, Navon S, Dorfan Y, Zaborske J, Pan T, Dahan O, Furman I, Pilpel Y. An evolutionarily conserved mechanism for controlling the efficiency of protein translation. Cell. 141: 344-54. PMID 20403328 DOI: 10.1016/j.cell.2010.03.031  0.6
2010 Rodríguez Martínez M, Soriano J, Tlusty T, Pilpel Y, Furman I. Messenger RNA fluctuations and regulatory RNAs shape the dynamics of a negative feedback loop. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 031924. PMID 20365787 DOI: 10.1103/PhysRevE.81.031924  0.6
2010 Christoffersen NR, Shalgi R, Frankel LB, Leucci E, Lees M, Klausen M, Pilpel Y, Nielsen FC, Oren M, Lund AH. p53-independent upregulation of miR-34a during oncogene-induced senescence represses MYC. Cell Death and Differentiation. 17: 236-45. PMID 19696787 DOI: 10.1038/cdd.2009.109  0.6
2009 Shalgi R, Brosh R, Oren M, Pilpel Y, Rotter V. Coupling transcriptional and post-transcriptional miRNA regulation in the control of cell fate. Aging. 1: 762-70. PMID 20157565  0.6
2009 Kam N, Pilpel Y, Fainzilber M. Can molecular motors drive distance measurements in injured neurons? Plos Computational Biology. 5: e1000477. PMID 19696880 DOI: 10.1371/journal.pcbi.1000477  0.6
2009 Mitchell A, Romano GH, Groisman B, Yona A, Dekel E, Kupiec M, Dahan O, Pilpel Y. Adaptive prediction of environmental changes by microorganisms. Nature. 460: 220-4. PMID 19536156 DOI: 10.1038/nature08112  0.6
2008 Brosh R, Shalgi R, Liran A, Landan G, Korotayev K, Nguyen GH, Enerly E, Johnsen H, Buganim Y, Solomon H, Goldstein I, Madar S, Goldfinger N, Børresen-Dale AL, Ginsberg D, ... ... Pilpel Y, et al. p53-Repressed miRNAs are involved with E2F in a feed-forward loop promoting proliferation. Molecular Systems Biology. 4: 229. PMID 19034270 DOI: 10.1038/msb.2008.65  0.6
2008 Shalem O, Dahan O, Levo M, Martinez MR, Furman I, Segal E, Pilpel Y. Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. Molecular Systems Biology. 4: 223. PMID 18854817 DOI: 10.1038/msb.2008.59  0.6
2007 Segal L, Lapidot M, Solan Z, Ruppin E, Pilpel Y, Horn D. Nucleotide variation of regulatory motifs may lead to distinct expression patterns. Bioinformatics (Oxford, England). 23: i440-9. PMID 17646329 DOI: 10.1093/bioinformatics/btm183  0.6
2007 Shalgi R, Lieber D, Oren M, Pilpel Y. Global and local architecture of the mammalian microRNA-transcription factor regulatory network. Plos Computational Biology. 3: e131. PMID 17630826 DOI: 10.1371/journal.pcbi.0030131  0.6
2007 Man O, Pilpel Y. Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species. Nature Genetics. 39: 415-21. PMID 17277776 DOI: 10.1038/ng1967  1
2007 Man O, Sussman JL, Pilpel Y. Examination of the tRNA adaptation index as a predictor of protein expression levels Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4023: 107-118.  0.6
2006 Furman I, Pilpel Y. Promoting human promoters. Molecular Systems Biology. 2: 2006.0030. PMID 16760901 DOI: 10.1038/msb4100072  0.6
2006 Bar-Even A, Paulsson J, Maheshri N, Carmi M, O'Shea E, Pilpel Y, Barkai N. Noise in protein expression scales with natural protein abundance. Nature Genetics. 38: 636-43. PMID 16715097 DOI: 10.1038/ng1807  0.6
2005 Sigal N, Vardy E, Molshanski-Mor S, Eitan A, Pilpel Y, Schuldiner S, Bibi E. 3D model of the Escherichia coli multidrug transporter MdfA reveals an essential membrane-embedded positive charge. Biochemistry. 44: 14870-80. PMID 16274234 DOI: 10.1021/bi051574p  0.6
2002 Cohen BA, Pilpel Y, Mitra RD, Church GM. Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks. Molecular Biology of the Cell. 13: 1608-14. PMID 12006656 DOI: 10.1091/mbc.01-10-0472  0.6
2001 Fuchs T, Glusman G, Horn-Saban S, Lancet D, Pilpel Y. The human olfactory subgenome: from sequence to structure and evolution. Human Genetics. 108: 1-13. PMID 11214901 DOI: 10.1007/s004390000436  0.6
2001 Lapidot M, Pilpel Y, Gilad Y, Falcovitz A, Sharon D, Haaf T, Lancet D. Mouse-human orthology relationships in an olfactory receptor gene cluster. Genomics. 71: 296-306. PMID 11170746 DOI: 10.1006/geno.2000.6431  0.6
2000 Glusman G, Bahar A, Sharon D, Pilpel Y, White J, Lancet D. The olfactory receptor gene superfamily: data mining, classification, and nomenclature. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 11: 1016-23. PMID 11063259  0.6
2000 Conticello SG, Pilpel Y, Glusman G, Fainzilber M. Position-specific codon conservation in hypervariable gene families. Trends in Genetics : Tig. 16: 57-9. PMID 10652528 DOI: 10.1016/S0168-9525(99)01956-3  0.6
1999 Pilpel Y, Ben-Tal N, Lancet D. kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction. Journal of Molecular Biology. 294: 921-35. PMID 10588897 DOI: 10.1006/jmbi.1999.3257  0.6
1999 Sharon D, Glusman G, Pilpel Y, Khen M, Gruetzner F, Haaf T, Lancet D. Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes. Genomics. 61: 24-36. PMID 10512677 DOI: 10.1006/geno.1999.5900  0.6
1999 Pilpel Y, Lancet D. The variable and conserved interfaces of modeled olfactory receptor proteins. Protein Science : a Publication of the Protein Society. 8: 969-77. PMID 10338007 DOI: 10.1110/ps.8.5.969  0.6
1999 Pilpel Y, Lancet D. Olfaction. Good reception in fruitfly antennae. Nature. 398: 285, 287. PMID 10192327 DOI: 10.1038/18552  0.6
1998 Segre D, Lancet D, Kedem O, Pilpel Y. Graded Autocatalysis Replication Domain (GARD): kinetic analysis of self-replication in mutually catalytic sets. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 28: 501-14. PMID 11536890  0.6
1998 Pilpel Y, Sosinsky A, Lancet D. Molecular biology of olfactory receptors. Essays in Biochemistry. 33: 93-104. PMID 10488444  0.6
1998 Sharon D, Glusman G, Pilpel Y, Horn-Saban S, Lancet D. Genome dynamics, evolution, and protein modeling in the olfactory receptor gene superfamily. Annals of the New York Academy of Sciences. 855: 182-93. PMID 9929603  0.6
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