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Daniel D. Loeb - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
Area:
Microbiology Biology, Molecular Biology
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Romero S, Unchwaniwala N, Evans EL, Eliceiri KW, Loeb DD, Sherer NM. Live Cell Imaging Reveals HBV Capsid Translocation from the Nucleus To the Cytoplasm Enabled by Cell Division. Mbio. e0330322. PMID 36809075 DOI: 10.1128/mbio.03303-22  0.792
2020 Taha TY, Anirudhan V, Limothai U, Loeb DD, Petukhov PA, McLachlan A. Modulation of hepatitis B virus pregenomic RNA stability and splicing by histone deacetylase 5 enhances viral biosynthesis. Plos Pathogens. 16: e1008802. PMID 32822428 DOI: 10.1371/Journal.Ppat.1008802  0.503
2016 Unchwaniwala N, Sherer NM, Loeb DD. Hepatitis B virus polymerase localizes to the mitochondria and its terminal protein domain contains the mitochondrial-targeting signal. Journal of Virology. PMID 27440888 DOI: 10.1128/Jvi.01229-16  0.807
2015 Tan Z, Pionek K, Unchwaniwala N, Maguire ML, Loeb DD, Zlotnick A. The interface between hepatitis B virus capsid proteins affects self-assembly, pregenomic RNA packaging, and reverse transcription. Journal of Virology. 89: 3275-84. PMID 25568211 DOI: 10.1128/Jvi.03545-14  0.835
2014 Wang JC, Nickens DG, Lentz TB, Loeb DD, Zlotnick A. Encapsidated hepatitis B virus reverse transcriptase is poised on an ordered RNA lattice. Proceedings of the National Academy of Sciences of the United States of America. 111: 11329-34. PMID 25034253 DOI: 10.1073/Pnas.1321424111  0.825
2014 Greco N, Hayes MH, Loeb DD. Snow goose hepatitis B virus (SGHBV) envelope and capsid proteins independently contribute to the ability of SGHBV to package capsids containing single-stranded DNA in virions. Journal of Virology. 88: 10705-13. PMID 24991016 DOI: 10.1128/Jvi.01694-14  0.609
2013 Tan Z, Maguire ML, Loeb DD, Zlotnick A. Genetically altering the thermodynamics and kinetics of hepatitis B virus capsid assembly has profound effects on virus replication in cell culture. Journal of Virology. 87: 3208-16. PMID 23283960 DOI: 10.1128/Jvi.03014-12  0.465
2011 Lentz TB, Loeb DD. Roles of the envelope proteins in the amplification of covalently closed circular DNA and completion of synthesis of the plus-strand DNA in hepatitis B virus. Journal of Virology. 85: 11916-27. PMID 21900164 DOI: 10.1128/Jvi.05373-11  0.83
2011 Lewellyn EB, Loeb DD. Serine phosphoacceptor sites within the core protein of hepatitis B virus contribute to genome replication pleiotropically. Plos One. 6: e17202. PMID 21358805 DOI: 10.1371/Journal.Pone.0017202  0.621
2011 Lewellyn EB, Loeb DD. The arginine clusters of the carboxy-terminal domain of the core protein of hepatitis B virus make pleiotropic contributions to genome replication. Journal of Virology. 85: 1298-309. PMID 21084467 DOI: 10.1128/Jvi.01957-10  0.547
2010 Maguire ML, Loeb DD. cis-Acting sequences that contribute to synthesis of minus-strand DNA are not conserved between hepadnaviruses. Journal of Virology. 84: 12824-31. PMID 20926578 DOI: 10.1128/Jvi.01487-10  0.706
2010 Lentz TB, Loeb DD. Development of cell cultures that express hepatitis B virus to high levels and accumulate cccDNA. Journal of Virological Methods. 169: 52-60. PMID 20600328 DOI: 10.1016/J.Jviromet.2010.06.015  0.808
2010 Porterfield JZ, Dhason MS, Loeb DD, Nassal M, Stray SJ, Zlotnick A. Full-length hepatitis B virus core protein packages viral and heterologous RNA with similarly high levels of cooperativity. Journal of Virology. 84: 7174-84. PMID 20427522 DOI: 10.1128/Jvi.00586-10  0.515
2008 Abraham TM, Lewellyn EB, Haines KM, Loeb DD. Characterization of the contribution of spliced RNAs of hepatitis B virus to DNA synthesis in transfected cultures of Huh7 and HepG2 cells. Virology. 379: 30-7. PMID 18657840 DOI: 10.1016/J.Virol.2008.06.021  0.81
2007 Abraham TM, Loeb DD. The topology of hepatitis B virus pregenomic RNA promotes its replication. Journal of Virology. 81: 11577-84. PMID 17699570 DOI: 10.1128/Jvi.01414-07  0.843
2007 Haines KM, Loeb DD. The sequence of the RNA primer and the DNA template influence the initiation of plus-strand DNA synthesis in hepatitis B virus. Journal of Molecular Biology. 370: 471-80. PMID 17531265 DOI: 10.1016/J.Jmb.2007.04.057  0.858
2007 Lewellyn EB, Loeb DD. Base pairing between cis-acting sequences contributes to template switching during plus-strand DNA synthesis in human hepatitis B virus. Journal of Virology. 81: 6207-15. PMID 17409141 DOI: 10.1128/Jvi.00210-07  0.614
2006 Habig JW, Loeb DD. Sequence identity of the direct repeats, DR1 and DR2, contributes to the discrimination between primer translocation and in situ priming during replication of the duck hepatitis B virus. Journal of Molecular Biology. 364: 32-43. PMID 17005197 DOI: 10.1016/J.Jmb.2006.08.095  0.86
2006 Abraham TM, Loeb DD. Base pairing between the 5' half of epsilon and a cis-acting sequence, phi, makes a contribution to the synthesis of minus-strand DNA for human hepatitis B virus. Journal of Virology. 80: 4380-7. PMID 16611897 DOI: 10.1128/Jvi.80.9.4380-4387.2006  0.843
2004 Ostrow KM, Loeb DD. Chimeras of duck and heron hepatitis B viruses provide evidence for functional interactions between viral components of pregenomic RNA encapsidation. Journal of Virology. 78: 8780-7. PMID 15280486 DOI: 10.1128/Jvi.78.16.8780-8787.2004  0.812
2004 Ostrow KM, Loeb DD. Underrepresentation of the 3' region of the capsid pregenomic RNA of duck hepatitis B virus. Journal of Virology. 78: 2179-86. PMID 14963114 DOI: 10.1128/Jvi.78.5.2179-2186.2004  0.789
2004 Liu N, Ji L, Maguire ML, Loeb DD. cis-Acting sequences that contribute to the synthesis of relaxed-circular DNA of human hepatitis B virus. Journal of Virology. 78: 642-9. PMID 14694095 DOI: 10.1128/Jvi.78.2.642-649.2004  0.613
2003 Habig JW, Loeb DD. Template switches during plus-strand DNA synthesis of duck hepatitis B virus are influenced by the base composition of the minus-strand terminal redundancy. Journal of Virology. 77: 12412-20. PMID 14610165 DOI: 10.1128/Jvi.77.23.12412-12420.2003  0.844
2003 Habig JW, Loeb DD. The conformation of the 3' end of the minus-strand DNA makes multiple contributions to template switches during plus-strand DNA synthesis of duck hepatitis B virus. Journal of Virology. 77: 12401-11. PMID 14610164 DOI: 10.1128/Jvi.77.23.12401-12411.2003  0.852
2003 Liu N, Tian R, Loeb DD. Base pairing among three cis-acting sequences contributes to template switching during hepadnavirus reverse transcription. Proceedings of the National Academy of Sciences of the United States of America. 100: 1984-9. PMID 12578983 DOI: 10.1073/Pnas.0436218100  0.549
2002 Loeb DD, Mack AA, Tian R. A secondary structure that contains the 5' and 3' splice sites suppresses splicing of duck hepatitis B virus pregenomic RNA. Journal of Virology. 76: 10195-202. PMID 12239294 DOI: 10.1128/Jvi.76.20.10195-10202.2002  0.549
2002 Ostrow KM, Loeb DD. Characterization of the cis-acting contributions to avian hepadnavirus RNA encapsidation. Journal of Virology. 76: 9087-95. PMID 12186892 DOI: 10.1128/Jvi.76.18.9087-9095.2002  0.786
2002 Liu N, Ostrow KM, Loeb DD. Identification and characterization of a novel replicative intermediate of heron hepatitis B virus. Virology. 295: 348-59. PMID 12033794 DOI: 10.1006/Viro.2002.1425  0.852
2002 Mueller-Hill K, Loeb DD. cis-Acting sequences 5E, M, and 3E interact to contribute to primer translocation and circularization during reverse transcription of avian hepadnavirus DNA. Journal of Virology. 76: 4260-6. PMID 11932391 DOI: 10.1128/Jvi.76.9.4260-4266.2002  0.575
2002 Havert MB, Ji L, Loeb DD. Analysis of duck hepatitis B virus reverse transcription indicates a common mechanism for the two template switches during plus-strand DNA synthesis. Journal of Virology. 76: 2763-9. PMID 11861843 DOI: 10.1128/Jvi.76.6.2763-2769.2002  0.633
2002 Habig JW, Loeb DD. Small DNA hairpin negatively regulates in situ priming during duck hepatitis B virus reverse transcription. Journal of Virology. 76: 980-9. PMID 11773373 DOI: 10.1128/Jvi.76.3.980-989.2002  0.857
2001 Loeb DD, Tian R. Mutations that increase in situ priming also decrease circularization for duck hepatitis B virus. Journal of Virology. 75: 6492-7. PMID 11413316 DOI: 10.1128/Jvi.75.14.6492-6497.2001  0.675
1998 Loeb DD, Tian R, Gulya KJ, Qualey AE. Changing the site of initiation of plus-strand DNA synthesis inhibits the subsequent template switch during replication of a hepadnavirus. Journal of Virology. 72: 6565-73. PMID 9658101 DOI: 10.1128/Jvi.72.8.6565-6573.1998  0.687
1998 Loeb DD, Tian R, Gulya KJ, Qualey AE. Changing the Site of Initiation of Plus-Strand DNA Synthesis Inhibits the Subsequent Template Switch during Replication of a Hepadnavirus Journal of Virology. 72: 6565-6573. DOI: 10.1128/jvi.72.8.6565-6573.1998  0.628
1997 Loeb DD, Gulya KJ, Tian R. Sequence identity of the terminal redundancies on the minus-strand DNA template is necessary but not sufficient for the template switch during hepadnavirus plus-strand DNA synthesis. Journal of Virology. 71: 152-60. PMID 8985334 DOI: 10.1128/Jvi.71.1.152-160.1997  0.647
1997 Jiang H, Loeb DD. Insertions within epsilon affect synthesis of minus-strand DNA before the template switch for duck hepatitis B virus. Journal of Virology. 71: 5345-5354. DOI: 10.1128/jvi.71.7.5345-5354.1997  0.59
1997 Havert MB, Loeb DD. cis-Acting sequences in addition to donor and acceptor sites are required for template switching during synthesis of plus-strand DNA for duck hepatitis B virus. Journal of Virology. 71: 5336-5344. DOI: 10.1128/Jvi.71.7.5336-5344.1997  0.627
1997 Loeb DD, Gulya KJ, Tian R. Sequence identity of the terminal redundancies on the minus-strand DNA template is necessary but not sufficient for the template switch during hepadnavirus plus-strand DNA synthesis. Journal of Virology. 71: 152-160. DOI: 10.1128/jvi.71.1.152-160.1997  0.549
1996 Loeb DD, Tian R, Gulya KJ. Mutations within DR2 independently reduce the amount of both minus- and plus-strand DNA synthesized during duck hepatitis B virus replication. Journal of Virology. 70: 8684-90. PMID 8970995 DOI: 10.1128/Jvi.70.12.8684-8690.1996  0.614
1996 Loeb DD, Tian R, Gulya KJ. Mutations within DR2 independently reduce the amount of both minus- and plus-strand DNA synthesized during duck hepatitis B virus replication. Journal of Virology. 70: 8684-8690. DOI: 10.1128/jvi.70.12.8684-8690.1996  0.541
1996 Mueller-Hill K, Loeb DD. Previously unsuspected cis-acting sequences for DNA replication revealed by characterization of a chimeric heron/duck hepatitis B virus. Journal of Virology. 70: 8310-8317. DOI: 10.1128/jvi.70.12.8310-8317.1996  0.547
1995 Loeb DD, Tian R. Transfer of the minus strand of DNA during hepadnavirus replication is not invariable but prefers a specific location Journal of Virology. 69: 6886-6891. PMID 7474104 DOI: 10.1128/Jvi.69.11.6886-6891.1995  0.649
1995 Loeb DD, Tian R. Transfer of the minus strand of DNA during hepadnavirus replication is not invariable but prefers a specific location. Journal of Virology. 69: 6886-6891. DOI: 10.1128/jvi.69.11.6886-6891.1995  0.483
1991 Hutchison CA, Swanstrom R, Loeb DD. Complete mutagenesis of protein coding domains Methods in Enzymology. 202: 356-390. PMID 1784182 DOI: 10.1016/0076-6879(91)02019-6  0.413
1991 Hirsch RC, Loeb DD, Pollack JR, Ganem D. cis-acting sequences required for encapsidation of duck hepatitis B virus pregenomic RNA. Journal of Virology. 65: 3309-3316. DOI: 10.1128/jvi.65.6.3309-3316.1991  0.435
1991 Staprans S, Loeb DD, Ganem D. Mutations affecting hepadnavirus plus-strand DNA synthesis dissociate primer cleavage from translocation and reveal the origin of linear viral DNA. Journal of Virology. 65: 1255-1262. DOI: 10.1128/jvi.65.3.1255-1262.1991  0.53
1991 Loeb D, Hirsch R, Ganem D. Sequence-independent RNA cleavages generate the primers for plus strand DNA synthesis in hepatitis B viruses: implications for other reverse transcribing elements. The Embo Journal. 10: 3533-3540. DOI: 10.1002/j.1460-2075.1991.tb04917.x  0.601
1990 Loeb DD, Sung NS, Pesano RL, Sexton CJ, Hutchison C, Pagano JS. Plasmid origin of replication of herpesvirus papio: DNA sequence and enhancer function. Journal of Virology. 64: 2876-2883. DOI: 10.1128/jvi.64.6.2876-2883.1990  0.484
1988 Burton FH, Loeb DD, McGraw RA, Edgell MH, Hutchison CA. A directed nucleotide-sequencing approach for single-stranded vectors based on recloning intermediates of a progressive DNA synthesis reaction Gene. 67: 159-168. PMID 3169575 DOI: 10.1016/0378-1119(88)90393-9  0.513
1986 Burton FH, Loeb DD, Hutchison CA, Edgell MH. A simple nonisotopic method for restriction mapping in single-stranded DNA cloning vectors based on taking timepoints during primed Klenow synthesis Dna (Mary Ann Liebert, Inc.). 5: 239-245. PMID 3013551 DOI: 10.1089/dna.1986.5.239  0.365
1985 Burton FH, Loeb DD, Chao SF, Hutchison CA, Edgell MH. Transposition of a long member of the L1 major interspersed DNA family into the mouse beta globin gene locus Nucleic Acids Research. 13: 5071-5084. PMID 2991851 DOI: 10.1093/Nar/13.14.5071  0.343
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