| Year |
Citation |
Score |
| 2022 |
Ohtake T, Kawase N, Pontrelli S, Nitta K, Laviña WA, Shen CR, Putri SP, Liao JC, Fukusaki E. Metabolomics-Driven Identification of the Rate-Limiting Steps in 1-Propanol Production. Frontiers in Microbiology. 13: 871624. PMID 35495658 DOI: 10.3389/fmicb.2022.871624 |
0.321 |
|
| 2020 |
Chen FY, Jung HW, Tsuei CY, Liao JC. Converting Escherichia coli to a Synthetic Methylotroph Growing Solely on Methanol. Cell. PMID 32780992 DOI: 10.1016/J.Cell.2020.07.010 |
0.404 |
|
| 2019 |
Chen CT, Chen FY, Bogorad IW, Wu TY, Derks J, Zhang R, Lee AS, Jones ME, Liao JC. Corrigendum to "Synthetic methanol auxotrophy of Escherichia coli for methanol-dependent growth and production" [Metab. Eng. 49 (2018) 257-266]. Metabolic Engineering. 54: 292. PMID 31102942 DOI: 10.1016/J.Ymben.2019.04.006 |
0.352 |
|
| 2019 |
Nishiguchi H, Hiasa N, Uebayashi K, Liao J, Shimizu H, Matsuda F. Transomics data-driven, ensemble kinetic modeling for system-level understanding and engineering of the cyanobacteria central metabolism. Metabolic Engineering. PMID 30633975 DOI: 10.1016/J.Ymben.2019.01.004 |
0.423 |
|
| 2018 |
Putri SP, Nakayama Y, Shen C, Noguchi S, Nitta K, Bamba T, Pontrelli S, Liao J, Fukusaki E. Identifying metabolic elements that contribute to productivity of 1-propanol bioproduction using metabolomic analysis. Metabolomics : Official Journal of the Metabolomic Society. 14: 96. PMID 30830363 DOI: 10.1007/S11306-018-1386-0 |
0.434 |
|
| 2018 |
Nitta K, Laviña WA, Pontrelli S, Liao JC, Putri SP, Fukusaki E. Metabolome analysis revealed the knockout of glyoxylate shunt as an effective strategy for improvement of 1-butanol production in transgenic Escherichia coli. Journal of Bioscience and Bioengineering. PMID 30482596 DOI: 10.1016/J.Jbiosc.2018.08.013 |
0.433 |
|
| 2018 |
Pontrelli S, Fricke RCB, Teoh ST, Laviña WA, Putri SP, Fitz-Gibbon S, Chung M, Pellegrini M, Fukusaki E, Liao JC. Metabolic repair through emergence of new pathways in Escherichia coli. Nature Chemical Biology. 14: 1005-1009. PMID 30327558 DOI: 10.1038/S41589-018-0149-6 |
0.403 |
|
| 2018 |
Yu H, Liao JC. A modified serine cycle in Escherichia coli coverts methanol and CO to two-carbon compounds. Nature Communications. 9: 3992. PMID 30266898 DOI: 10.1038/S41467-018-06496-4 |
0.36 |
|
| 2018 |
Chen CT, Chen FY, Bogorad IW, Wu TY, Zhang R, Lee AS, Liao JC. Synthetic methanol auxotrophy of Escherichia coli for methanol-dependent growth and production. Metabolic Engineering. PMID 30172686 DOI: 10.1016/J.Ymben.2018.08.010 |
0.387 |
|
| 2018 |
Pontrelli S, Fricke RCB, Sakurai SSM, Putri SP, Fitz-Gibbon S, Chung M, Wu HY, Chen YJ, Pellegrini M, Fukusaki E, Liao JC. Directed strain evolution restructures metabolism for 1-butanol production in minimal media. Metabolic Engineering. PMID 30107263 DOI: 10.1016/J.Ymben.2018.08.004 |
0.446 |
|
| 2018 |
Fathima AM, Chuang D, Laviña WA, Liao J, Putri SP, Fukusaki E. Iterative cycle of widely targeted metabolic profiling for the improvement of 1-butanol titer and productivity in . Biotechnology For Biofuels. 11: 188. PMID 30002728 DOI: 10.1186/S13068-018-1187-8 |
0.409 |
|
| 2018 |
Yu H, Li X, Duchoud F, Chuang DS, Liao JC. Augmenting the Calvin-Benson-Bassham cycle by a synthetic malyl-CoA-glycerate carbon fixation pathway. Nature Communications. 9: 2008. PMID 29789614 DOI: 10.1038/S41467-018-04417-Z |
0.357 |
|
| 2018 |
Pontrelli S, Chiu TY, Lan EI, Chen FY, Chang PC, Liao JC. Escherichia coli as a host for metabolic engineering. Metabolic Engineering. PMID 29689382 DOI: 10.1016/J.Ymben.2018.04.008 |
0.767 |
|
| 2018 |
Lin PP, Jaeger AJ, Wu TY, Xu SC, Lee AS, Gao F, Chen PW, Liao JC. Construction and evolution of anstrain relying on nonoxidative glycolysis for sugar catabolism. Proceedings of the National Academy of Sciences of the United States of America. PMID 29555759 DOI: 10.1073/Pnas.1802191115 |
0.416 |
|
| 2018 |
Black W, Zhang L, Kamoku C, Liao JC, Li H. Rearrangement of Coenzyme A-acylated carbon chain enables synthesis of isobutanol via a novel pathway in Ralstonia eutropha. Acs Synthetic Biology. PMID 29429336 DOI: 10.1021/Acssynbio.7B00409 |
0.489 |
|
| 2017 |
Nitta K, Laviña WA, Pontrelli S, Liao JC, Putri SP, Fukusaki E. Orthogonal partial least squares/projections to latent structures regression-based metabolomics approach for identification of gene targets for improvement of 1-butanol production in Escherichia coli. Journal of Bioscience and Bioengineering. PMID 28669528 DOI: 10.1016/J.Jbiosc.2017.05.015 |
0.409 |
|
| 2017 |
Ohtake T, Pontrelli S, Laviña WA, Liao JC, Putri SP, Fukusaki E. Metabolomics-driven approach to solving a CoA imbalance for improved 1-butanol production in Escherichia coli. Metabolic Engineering. PMID 28400330 DOI: 10.1016/J.Ymben.2017.04.003 |
0.482 |
|
| 2017 |
Lafontaine Rivera JG, Theisen MK, Chen PW, Liao JC. Kinetically accessible yield (KAY) for redirection of metabolism to produce exo-metabolites. Metabolic Engineering. PMID 28389394 DOI: 10.1016/J.Ymben.2017.03.011 |
0.41 |
|
| 2017 |
Chen PW, Theisen MK, Liao JC. Metabolic systems modeling for cell factories improvement. Current Opinion in Biotechnology. 46: 114-119. PMID 28388485 DOI: 10.1016/J.Copbio.2017.02.005 |
0.337 |
|
| 2017 |
Wang J, Jain R, Shen X, Sun X, Cheng M, Liao JC, Yuan Q, Yan Y. Rational engineering of diol dehydratase enables 1,4-butanediol biosynthesis from xylose. Metabolic Engineering. PMID 28215518 DOI: 10.1016/J.Ymben.2017.02.003 |
0.399 |
|
| 2017 |
Soh LM, Mak WS, Lin PP, Mi L, Chen FY, Damoiseaux R, Siegel JB, Liao JC. Engineering a thermostable keto acid decarboxylase using directed evolution and computationally directed protein design. Acs Synthetic Biology. PMID 28052191 DOI: 10.1021/Acssynbio.6B00240 |
0.338 |
|
| 2016 |
Xiong W, Lin PP, Magnusson L, Warner L, Liao JC, Maness PC, Chou KJ. CO2-fixing one-carbon metabolism in a cellulose-degrading bacterium Clostridium thermocellum. Proceedings of the National Academy of Sciences of the United States of America. PMID 27794122 DOI: 10.1073/Pnas.1605482113 |
0.587 |
|
| 2016 |
Liao JC, Mi L, Pontrelli S, Luo S. Fuelling the future: microbial engineering for the production of sustainable biofuels. Nature Reviews. Microbiology. PMID 27026253 DOI: 10.1038/Nrmicro.2016.32 |
0.382 |
|
| 2016 |
Theisen MK, Lafontaine Rivera JG, Liao JC. Stability of Ensemble Models Predicts Productivity of Enzymatic Systems. Plos Computational Biology. 12: e1004800. PMID 26963521 DOI: 10.1371/Journal.Pcbi.1004800 |
0.344 |
|
| 2016 |
Wu TY, Chen CT, Liu JT, Bogorad IW, Damoiseaux R, Liao JC. Characterization and evolution of an activator-independent methanol dehydrogenase from Cupriavidus necator N-1. Applied Microbiology and Biotechnology. PMID 26846745 DOI: 10.1007/S00253-016-7320-3 |
0.321 |
|
| 2016 |
Chen CT, Liao JC. Frontiers in microbial 1-butanol and isobutanol production. Fems Microbiology Letters. PMID 26832641 DOI: 10.1093/Femsle/Fnw020 |
0.407 |
|
| 2016 |
Wernick DG, Pontrelli SP, Pollock AW, Liao JC. Sustainable biorefining in wastewater by engineered extreme alkaliphile Bacillus marmarensis. Scientific Reports. 6: 20224. PMID 26831574 DOI: 10.1038/Srep20224 |
0.319 |
|
| 2016 |
Noguchi S, Putri SP, Lan EI, Laviña WA, Dempo Y, Bamba T, Liao JC, Fukusaki E. Quantitative target analysis and kinetic profiling of acyl-CoAs reveal the rate-limiting step in cyanobacterial 1-butanol production. Metabolomics : Official Journal of the Metabolomic Society. 12: 26. PMID 26766939 DOI: 10.1007/S11306-015-0940-2 |
0.774 |
|
| 2015 |
Mak WS, Tran S, Marcheschi R, Bertolani S, Thompson J, Baker D, Liao JC, Siegel JB. Integrative genomic mining for enzyme function to enable engineering of a non-natural biosynthetic pathway. Nature Communications. 6: 10005. PMID 26598135 DOI: 10.1038/Ncomms10005 |
0.352 |
|
| 2015 |
Lan EI, Chuang DS, Shen CR, Lee AM, Ro SY, Liao JC. Metabolic engineering of cyanobacteria for photosynthetic 3-hydroxypropionic acid production from CO2 using Synechococcus elongatus PCC 7942. Metabolic Engineering. PMID 26278506 DOI: 10.1016/J.Ymben.2015.08.002 |
0.773 |
|
| 2015 |
Lin PP, Mi L, Morioka AH, Yoshino KM, Konishi S, Xu SC, Papanek BA, Riley LA, Guss AM, Liao JC. Consolidated bioprocessing of cellulose to isobutanol using Clostridium thermocellum. Metabolic Engineering. 31: 44-52. PMID 26170002 DOI: 10.1016/J.Ymben.2015.07.001 |
0.434 |
|
| 2015 |
Lafontaine Rivera JG, Lee Y, Liao JC. An entropy-like index of bifurcational robustness for metabolic systems. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 25855352 DOI: 10.1039/C4Ib00257A |
0.373 |
|
| 2015 |
Li H, Liao JC. A synthetic anhydrotetracycline-controllable gene expression system in Ralstonia eutropha H16. Acs Synthetic Biology. 4: 101-6. PMID 24702232 DOI: 10.1021/Sb4001189 |
0.465 |
|
| 2014 |
Bogorad IW, Chen CT, Theisen MK, Wu TY, Schlenz AR, Lam AT, Liao JC. Building carbon-carbon bonds using a biocatalytic methanol condensation cycle. Proceedings of the National Academy of Sciences of the United States of America. 111: 15928-33. PMID 25355907 DOI: 10.1073/Pnas.1413470111 |
0.318 |
|
| 2014 |
Lee Y, Lafontaine Rivera JG, Liao JC. Ensemble Modeling for Robustness Analysis in engineering non-native metabolic pathways. Metabolic Engineering. 25: 63-71. PMID 24972370 DOI: 10.1016/J.Ymben.2014.06.006 |
0.387 |
|
| 2014 |
Khodayari A, Zomorrodi AR, Liao JC, Maranas CD. A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data. Metabolic Engineering. 25: 50-62. PMID 24928774 DOI: 10.1016/J.Ymben.2014.05.014 |
0.373 |
|
| 2014 |
Nielsen J, Fussenegger M, Keasling J, Lee SY, Liao JC, Prather K, Palsson B. Engineering synergy in biotechnology. Nature Chemical Biology. 10: 319-22. PMID 24743245 DOI: 10.1038/Nchembio.1519 |
0.499 |
|
| 2014 |
Lin PP, Rabe KS, Takasumi JL, Kadisch M, Arnold FH, Liao JC. Isobutanol production at elevated temperatures in thermophilic Geobacillus thermoglucosidasius. Metabolic Engineering. 24: 1-8. PMID 24721011 DOI: 10.1016/J.Ymben.2014.03.006 |
0.381 |
|
| 2014 |
Li X, Shen CR, Liao JC. Isobutanol production as an alternative metabolic sink to rescue the growth deficiency of the glycogen mutant of Synechococcus elongatus PCC 7942. Photosynthesis Research. 120: 301-10. PMID 24590366 DOI: 10.1007/S11120-014-9987-6 |
0.385 |
|
| 2014 |
Harper M, Gronenberg L, Liao J, Lee C. Comprehensive detection of genes causing a phenotype using phenotype sequencing and pathway analysis. Plos One. 9: e88072. PMID 24586303 DOI: 10.1371/Journal.Pone.0088072 |
0.378 |
|
| 2014 |
Choi KY, Wernick DG, Tat CA, Liao JC. Consolidated conversion of protein waste into biofuels and ammonia using Bacillus subtilis. Metabolic Engineering. 23: 53-61. PMID 24566040 DOI: 10.1016/J.Ymben.2014.02.007 |
0.402 |
|
| 2014 |
Li H, Liao JC. Development of an NADPH-dependent homophenylalanine dehydrogenase by protein engineering. Acs Synthetic Biology. 3: 13-20. PMID 24053171 DOI: 10.1021/Sb400093X |
0.51 |
|
| 2013 |
Bogorad IW, Lin TS, Liao JC. Synthetic non-oxidative glycolysis enables complete carbon conservation. Nature. 502: 693-7. PMID 24077099 DOI: 10.1038/Nature12575 |
0.341 |
|
| 2013 |
Kusakabe T, Tatsuke T, Tsuruno K, Hirokawa Y, Atsumi S, Liao JC, Hanai T. Engineering a synthetic pathway in cyanobacteria for isopropanol production directly from carbon dioxide and light. Metabolic Engineering. 20: 101-8. PMID 24076145 DOI: 10.1016/J.Ymben.2013.09.007 |
0.625 |
|
| 2013 |
Minty JJ, Singer ME, Scholz SA, Bae CH, Ahn JH, Foster CE, Liao JC, Lin XN. Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass. Proceedings of the National Academy of Sciences of the United States of America. 110: 14592-7. PMID 23959872 DOI: 10.1073/Pnas.1218447110 |
0.44 |
|
| 2013 |
Mainguet SE, Gronenberg LS, Wong SS, Liao JC. A reverse glyoxylate shunt to build a non-native route from C4 to C2 in Escherichia coli. Metabolic Engineering. 19: 116-27. PMID 23938029 DOI: 10.1016/J.Ymben.2013.06.004 |
0.389 |
|
| 2013 |
Gronenberg LS, Marcheschi RJ, Liao JC. Next generation biofuel engineering in prokaryotes. Current Opinion in Chemical Biology. 17: 462-71. PMID 23623045 DOI: 10.1016/J.Cbpa.2013.03.037 |
0.379 |
|
| 2013 |
Marcheschi RJ, Gronenberg LS, Liao JC. Protein engineering for metabolic engineering: current and next-generation tools. Biotechnology Journal. 8: 545-55. PMID 23589443 DOI: 10.1002/Biot.201200371 |
0.378 |
|
| 2013 |
Zomorrodi AR, Lafontaine Rivera JG, Liao JC, Maranas CD. Optimization-driven identification of genetic perturbations accelerates the convergence of model parameters in ensemble modeling of metabolic networks. Biotechnology Journal. 8: 1090-104. PMID 23450699 DOI: 10.1002/Biot.201200270 |
0.357 |
|
| 2013 |
Shen CR, Liao JC. Synergy as design principle for metabolic engineering of 1-propanol production in Escherichia coli. Metabolic Engineering. 17: 12-22. PMID 23376654 DOI: 10.1016/J.Ymben.2013.01.008 |
0.427 |
|
| 2013 |
Li H, Liao JC. Engineering a cyanobacterium as the catalyst for the photosynthetic conversion of CO2 to 1,2-propanediol. Microbial Cell Factories. 12: 4. PMID 23339487 DOI: 10.1186/1475-2859-12-4 |
0.511 |
|
| 2013 |
Wernick DG, Liao JC. Protein-based biorefining: metabolic engineering for production of chemicals and fuel with regeneration of nitrogen fertilizers. Applied Microbiology and Biotechnology. 97: 1397-406. PMID 23296497 DOI: 10.1007/S00253-012-4605-Z |
0.394 |
|
| 2013 |
Lan EI, Liao JC. Microbial synthesis of n-butanol, isobutanol, and other higher alcohols from diverse resources. Bioresource Technology. 135: 339-49. PMID 23186690 DOI: 10.1016/J.Biortech.2012.09.104 |
0.744 |
|
| 2013 |
Li H, Liao JC. Biological conversion of carbon dioxide to photosynthetic fuels and electrofuels Energy and Environmental Science. 6: 2892-2899. DOI: 10.1039/C3Ee41847B |
0.431 |
|
| 2013 |
Lan EI, Ro SY, Liao JC. Oxygen-tolerant coenzyme A-acylating aldehyde dehydrogenase facilitates efficient photosynthetic n-butanol biosynthesis in cyanobacteria Energy and Environmental Science. 6: 2672-2681. DOI: 10.1039/C3Ee41405A |
0.767 |
|
| 2013 |
Lan EI, Dekishima Y, Chuang DS, Liao JC. Metabolic engineering of 2-pentanone synthesis in Escherichia coli Aiche Journal. 59: 3167-3175. DOI: 10.1002/Aic.14086 |
0.791 |
|
| 2012 |
Machado HB, Dekishima Y, Luo H, Lan EI, Liao JC. A selection platform for carbon chain elongation using the CoA-dependent pathway to produce linear higher alcohols. Metabolic Engineering. 14: 504-11. PMID 22819734 DOI: 10.1016/J.Ymben.2012.07.002 |
0.764 |
|
| 2012 |
Felnagle EA, Chaubey A, Noey EL, Houk KN, Liao JC. Engineering synthetic recursive pathways to generate non-natural small molecules. Nature Chemical Biology. 8: 518-26. PMID 22596203 DOI: 10.1038/Nchembio.959 |
0.394 |
|
| 2012 |
Lan EI, Liao JC. ATP drives direct photosynthetic production of 1-butanol in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 109: 6018-23. PMID 22474341 DOI: 10.1073/Pnas.1200074109 |
0.779 |
|
| 2012 |
Li H, Opgenorth PH, Wernick DG, Rogers S, Wu TY, Higashide W, Malati P, Huo YX, Cho KM, Liao JC. Integrated electromicrobial conversion of CO2 to higher alcohols. Science (New York, N.Y.). 335: 1596. PMID 22461604 DOI: 10.1126/Science.1217643 |
0.424 |
|
| 2012 |
Tran LM, Chang CJ, Plaisier S, Wu S, Dang J, Mischel PS, Liao JC, Graeber TG, Wu H. Determining PTEN functional status by network component deduced transcription factor activities. Plos One. 7: e31053. PMID 22347425 DOI: 10.1371/Journal.Pone.0031053 |
0.544 |
|
| 2012 |
Marcheschi RJ, Li H, Zhang K, Noey EL, Kim S, Chaubey A, Houk KN, Liao JC. A synthetic recursive "+1" pathway for carbon chain elongation. Acs Chemical Biology. 7: 689-97. PMID 22242720 DOI: 10.1021/Cb200313E |
0.514 |
|
| 2012 |
Li Y, Tschaplinski TJ, Engle NL, Hamilton CY, Rodriguez M, Liao JC, Schadt CW, Guss AM, Yang Y, Graham DE. Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations. Biotechnology For Biofuels. 5: 2. PMID 22214220 DOI: 10.1186/1754-6834-5-2 |
0.376 |
|
| 2012 |
Huo YX, Wernick DG, Liao JC. Toward nitrogen neutral biofuel production. Current Opinion in Biotechnology. 23: 406-13. PMID 22054644 DOI: 10.1016/J.Copbio.2011.10.005 |
0.321 |
|
| 2012 |
Tan Y, Liao JC. Metabolic ensemble modeling for strain engineers. Biotechnology Journal. 7: 343-53. PMID 22021171 DOI: 10.1002/Biot.201100186 |
0.641 |
|
| 2012 |
Lu JL, Liao JC. Metabolic engineering and control analysis for production of aromatics: Role of transaldolase. Biotechnology and Bioengineering. 53: 132-8. PMID 18633957 DOI: 10.1002/(Sici)1097-0290(19970120)53:2<132::Aid-Bit2>3.0.Co;2-P |
0.453 |
|
| 2012 |
Liao JC, Hou SY, Chao YP. Pathway analysis, engineering, and physiological considerations for redirecting central metabolism. Biotechnology and Bioengineering. 52: 129-40. PMID 18629859 DOI: 10.1002/(Sici)1097-0290(19961005)52:1<129::Aid-Bit13>3.0.Co;2-J |
0.44 |
|
| 2012 |
Patnaik R, Spitzer RG, Liao JC. Pathway engineering for production of aromatics in Escherichia coli: Confirmation of stoichiometric analysis by independent modulation of AroG, TktA, and Pps activities. Biotechnology and Bioengineering. 46: 361-70. PMID 18623323 DOI: 10.1002/Bit.260460409 |
0.428 |
|
| 2012 |
Shen CR, Liao JC. Photosynthetic production of 2-methyl-1-butanol from CO 2 in cyanobacterium Synechococcus elongatus PCC7942 and characterization of the native acetohydroxyacid synthase Energy and Environmental Science. 5: 9574-9583. DOI: 10.1039/C2Ee23148D |
0.429 |
|
| 2012 |
Lan EI, Liao JC. Corrigendum to "Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide" [Metab. Eng. 13 (2011) 353-363] Metabolic Engineering. 14: 68. DOI: 10.1016/J.Ymben.2011.11.001 |
0.758 |
|
| 2011 |
Hu CW, Chang YL, Chen SJ, Kuo-Huang LL, Liao JC, Huang HC, Juan HF. Revealing the functions of the transketolase enzyme isoforms in Rhodopseudomonas palustris using a systems biology approach. Plos One. 6: e28329. PMID 22174789 DOI: 10.1371/Journal.Pone.0028329 |
0.387 |
|
| 2011 |
Smith KM, Liao JC. An evolutionary strategy for isobutanol production strain development in Escherichia coli. Metabolic Engineering. 13: 674-81. PMID 21911074 DOI: 10.1016/J.Ymben.2011.08.004 |
0.552 |
|
| 2011 |
Dekishima Y, Lan EI, Shen CR, Cho KM, Liao JC. Extending carbon chain length of 1-butanol pathway for 1-hexanol synthesis from glucose by engineered Escherichia coli. Journal of the American Chemical Society. 133: 11399-401. PMID 21707101 DOI: 10.1021/Ja203814D |
0.772 |
|
| 2011 |
Contador CA, Andrews BA, Liao JC, Asenjo JA. Identification of transcription factors perturbed by the synthesis of high levels of a foreign protein in yeast Saccharomyces cerevisiae. Biotechnology Progress. 27: 925-36. PMID 21656919 DOI: 10.1002/Btpr.616 |
0.389 |
|
| 2011 |
Shen CR, Liao JC. A synthetic iterative pathway for ketoacid elongation. Methods in Enzymology. 497: 469-81. PMID 21601099 DOI: 10.1016/B978-0-12-385075-1.00020-2 |
0.349 |
|
| 2011 |
Lan EI, Liao JC. Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide. Metabolic Engineering. 13: 353-63. PMID 21569861 DOI: 10.1016/J.Ymben.2011.04.004 |
0.789 |
|
| 2011 |
Baez A, Cho KM, Liao JC. High-flux isobutanol production using engineered Escherichia coli: a bioreactor study with in situ product removal. Applied Microbiology and Biotechnology. 90: 1681-90. PMID 21547458 DOI: 10.1007/S00253-011-3173-Y |
0.393 |
|
| 2011 |
Shen CR, Lan EI, Dekishima Y, Baez A, Cho KM, Liao JC. Driving forces enable high-titer anaerobic 1-butanol synthesis in Escherichia coli. Applied and Environmental Microbiology. 77: 2905-15. PMID 21398484 DOI: 10.1128/Aem.03034-10 |
0.768 |
|
| 2011 |
Huo YX, Cho KM, Rivera JG, Monte E, Shen CR, Yan Y, Liao JC. Conversion of proteins into biofuels by engineering nitrogen flux. Nature Biotechnology. 29: 346-51. PMID 21378968 DOI: 10.1038/Nbt.1789 |
0.367 |
|
| 2011 |
Higashide W, Li Y, Yang Y, Liao JC. Metabolic engineering of Clostridium cellulolyticum for production of isobutanol from cellulose. Applied and Environmental Microbiology. 77: 2727-33. PMID 21378054 DOI: 10.1128/Aem.02454-10 |
0.444 |
|
| 2011 |
Tan Y, Rivera JG, Contador CA, Asenjo JA, Liao JC. Reducing the allowable kinetic space by constructing ensemble of dynamic models with the same steady-state flux. Metabolic Engineering. 13: 60-75. PMID 21075211 DOI: 10.1016/J.Ymben.2010.11.001 |
0.624 |
|
| 2011 |
Rizk ML, Laguna R, Smith KM, Tabita FR, Liao JC. Redox homeostasis phenotypes in RubisCO-deficient Rhodobacter sphaeroides via ensemble modeling. Biotechnology Progress. 27: 15-22. PMID 20939096 DOI: 10.1002/Btpr.506 |
0.743 |
|
| 2010 |
Li H, Cann AF, Liao JC. Biofuels: biomolecular engineering fundamentals and advances. Annual Review of Chemical and Biomolecular Engineering. 1: 19-36. PMID 22432571 DOI: 10.1146/Annurev-Chembioeng-073009-100938 |
0.802 |
|
| 2010 |
Atsumi S, Wu TY, Machado IM, Huang WC, Chen PY, Pellegrini M, Liao JC. Evolution, genomic analysis, and reconstruction of isobutanol tolerance in Escherichia coli. Molecular Systems Biology. 6: 449. PMID 21179021 DOI: 10.1038/Msb.2010.98 |
0.593 |
|
| 2010 |
Mainguet SE, Liao JC. Bioengineering of microorganisms for C₃ to C₅ alcohols production. Biotechnology Journal. 5: 1297-308. PMID 21154669 DOI: 10.1002/Biot.201000276 |
0.346 |
|
| 2010 |
Tran LM, Hyduke DR, Liao JC. Trimming of mammalian transcriptional networks using network component analysis. Bmc Bioinformatics. 11: 511. PMID 20942926 DOI: 10.1186/1471-2105-11-511 |
0.75 |
|
| 2010 |
Inokuma K, Liao JC, Okamoto M, Hanai T. Improvement of isopropanol production by metabolically engineered Escherichia coli using gas stripping. Journal of Bioscience and Bioengineering. 110: 696-701. PMID 20696614 DOI: 10.1016/J.Jbiosc.2010.07.010 |
0.399 |
|
| 2010 |
Wong I, Atsumi S, Huang WC, Wu TY, Hanai T, Lam ML, Tang P, Yang J, Liao JC, Ho CM. An agar gel membrane-PDMS hybrid microfluidic device for long term single cell dynamic study. Lab On a Chip. 10: 2710-9. PMID 20664845 DOI: 10.1039/C004719H |
0.544 |
|
| 2010 |
Dean JT, Rizk ML, Tan Y, Dipple KM, Liao JC. Ensemble modeling of hepatic fatty acid metabolism with a synthetic glyoxylate shunt. Biophysical Journal. 98: 1385-95. PMID 20409457 DOI: 10.1016/J.Bpj.2009.12.4308 |
0.792 |
|
| 2010 |
Sriram G, Parr LS, Rahib L, Liao JC, Dipple KM. Moonlighting function of glycerol kinase causes systems-level changes in rat hepatoma cells. Metabolic Engineering. 12: 332-40. PMID 20399282 DOI: 10.1016/J.Ymben.2010.04.001 |
0.363 |
|
| 2010 |
Smith KM, Cho KM, Liao JC. Engineering Corynebacterium glutamicum for isobutanol production. Applied Microbiology and Biotechnology. 87: 1045-55. PMID 20376637 DOI: 10.1007/S00253-010-2522-6 |
0.575 |
|
| 2010 |
Zhang K, Li H, Cho KM, Liao JC. Expanding metabolism for total biosynthesis of the nonnatural amino acid L-homoalanine. Proceedings of the National Academy of Sciences of the United States of America. 107: 6234-9. PMID 20332210 DOI: 10.1073/Pnas.0912903107 |
0.449 |
|
| 2010 |
Connor MR, Cann AF, Liao JC. 3-Methyl-1-butanol production in Escherichia coli: random mutagenesis and two-phase fermentation. Applied Microbiology and Biotechnology. 86: 1155-64. PMID 20072783 DOI: 10.1007/S00253-009-2401-1 |
0.784 |
|
| 2010 |
Cann AF, Liao JC. Pentanol isomer synthesis in engineered microorganisms. Applied Microbiology and Biotechnology. 85: 893-9. PMID 19859707 DOI: 10.1007/S00253-009-2262-7 |
0.806 |
|
| 2010 |
Atsumi S, Wu TY, Eckl EM, Hawkins SD, Buelter T, Liao JC. Engineering the isobutanol biosynthetic pathway in Escherichia coli by comparison of three aldehyde reductase/alcohol dehydrogenase genes. Applied Microbiology and Biotechnology. 85: 651-7. PMID 19609521 DOI: 10.1007/S00253-009-2085-6 |
0.64 |
|
| 2010 |
Jarboe LR, Hyduke DR, Liao JC. Systems Approaches to Unraveling Nitric Oxide Response Networks in Prokaryotes Nitric Oxide. 103-136. DOI: 10.1016/B978-0-12-373866-0.00004-6 |
0.745 |
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| 2010 |
Shen CR, Liao JC, Atsumi S. Metabolic engineering of Escherichia coli for 1-butanol and 1-propanol production via the keto-acid pathways Acs National Meeting Book of Abstracts. |
0.598 |
|
| 2009 |
Atsumi S, Higashide W, Liao JC. Direct photosynthetic recycling of carbon dioxide to isobutyraldehyde. Nature Biotechnology. 27: 1177-80. PMID 19915552 DOI: 10.1038/Nbt.1586 |
0.61 |
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| 2009 |
Yan Y, Lee CC, Liao JC. Enantioselective synthesis of pure (R,R)-2,3-butanediol in Escherichia coli with stereospecific secondary alcohol dehydrogenases. Organic & Biomolecular Chemistry. 7: 3914-7. PMID 19763290 DOI: 10.1039/B913501D |
0.305 |
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| 2009 |
Rizk ML, Liao JC. Ensemble modeling for aromatic production in Escherichia coli. Plos One. 4: e6903. PMID 19730732 DOI: 10.1371/Journal.Pone.0006903 |
0.71 |
|
| 2009 |
Atsumi S, Li Z, Liao JC. Acetolactate synthase from Bacillus subtilis serves as a 2-ketoisovalerate decarboxylase for isobutanol biosynthesis in Escherichia coli. Applied and Environmental Microbiology. 75: 6306-11. PMID 19684168 DOI: 10.1128/Aem.01160-09 |
0.609 |
|
| 2009 |
Lai D, Lluncor B, Schröder I, Gunsalus RP, Liao JC, Monbouquette HG. Reconstruction of the archaeal isoprenoid ether lipid biosynthesis pathway in Escherichia coli through digeranylgeranylglyceryl phosphate. Metabolic Engineering. 11: 184-91. PMID 19558961 DOI: 10.1016/J.Ymben.2009.01.008 |
0.374 |
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| 2009 |
Brynildsen MP, Liao JC. An integrated network approach identifies the isobutanol response network of Escherichia coli. Molecular Systems Biology. 5: 277. PMID 19536200 DOI: 10.1038/Msb.2009.34 |
0.679 |
|
| 2009 |
Dean JT, Tran L, Beaven S, Tontonoz P, Reue K, Dipple KM, Liao JC. Resistance to diet-induced obesity in mice with synthetic glyoxylate shunt. Cell Metabolism. 9: 525-36. PMID 19490907 DOI: 10.1016/J.Cmet.2009.04.008 |
0.747 |
|
| 2009 |
Connor MR, Liao JC. Microbial production of advanced transportation fuels in non-natural hosts. Current Opinion in Biotechnology. 20: 307-15. PMID 19473829 DOI: 10.1016/J.Copbio.2009.04.002 |
0.692 |
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| 2009 |
Contador CA, Rizk ML, Asenjo JA, Liao JC. Ensemble modeling for strain development of L-lysine-producing Escherichia coli. Metabolic Engineering. 11: 221-33. PMID 19379820 DOI: 10.1016/J.Ymben.2009.04.002 |
0.719 |
|
| 2009 |
Ye C, Galbraith SJ, Liao JC, Eskin E. Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast. Plos Computational Biology. 5: e1000311. PMID 19300475 DOI: 10.1371/Journal.Pcbi.1000311 |
0.319 |
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| 2009 |
Yan Y, Liao JC. Engineering metabolic systems for production of advanced fuels. Journal of Industrial Microbiology & Biotechnology. 36: 471-9. PMID 19198907 DOI: 10.1007/S10295-009-0532-0 |
0.429 |
|
| 2009 |
Rahib L, Sriram G, Harada MK, Liao JC, Dipple KM. Transcriptomic and network component analysis of glycerol kinase in skeletal muscle using a mouse model of glycerol kinase deficiency. Molecular Genetics and Metabolism. 96: 106-12. PMID 19121967 DOI: 10.1016/J.Ymgme.2008.11.163 |
0.307 |
|
| 2009 |
Wong WW, Tran LM, Liao JC. A hidden square-root boundary between growth rate and biomass yield. Biotechnology and Bioengineering. 102: 73-80. PMID 18683253 DOI: 10.1002/Bit.22046 |
0.552 |
|
| 2009 |
Delgado J, Meruane J, Liao JC. Experimental determination of flux control distribution in biochemical systems: in vitro model to analyze transient metabolite concentrations. Biotechnology and Bioengineering. 41: 1121-8. PMID 18601299 DOI: 10.1002/Bit.260411116 |
0.302 |
|
| 2009 |
Rizk ML, Liao JC. Ensemble modeling and related mathematical modeling of metabolic networks Journal of the Taiwan Institute of Chemical Engineers. 40: 595-601. DOI: 10.1016/J.Jtice.2009.05.003 |
0.704 |
|
| 2008 |
Zhang K, Sawaya MR, Eisenberg DS, Liao JC. Expanding metabolism for biosynthesis of nonnatural alcohols. Proceedings of the National Academy of Sciences of the United States of America. 105: 20653-8. PMID 19064911 DOI: 10.1073/Pnas.0807157106 |
0.404 |
|
| 2008 |
Atsumi S, Liao JC. Directed evolution of Methanococcus jannaschii citramalate synthase for biosynthesis of 1-propanol and 1-butanol by Escherichia coli. Applied and Environmental Microbiology. 74: 7802-8. PMID 18952866 DOI: 10.1128/Aem.02046-08 |
0.645 |
|
| 2008 |
Tran LM, Rizk ML, Liao JC. Ensemble modeling of metabolic networks. Biophysical Journal. 95: 5606-17. PMID 18820235 DOI: 10.1529/Biophysj.108.135442 |
0.754 |
|
| 2008 |
Shen CR, Liao JC. Metabolic engineering of Escherichia coli for 1-butanol and 1-propanol production via the keto-acid pathways. Metabolic Engineering. 10: 312-20. PMID 18775501 DOI: 10.1016/J.Ymben.2008.08.001 |
0.408 |
|
| 2008 |
Atsumi S, Liao JC. Metabolic engineering for advanced biofuels production from Escherichia coli. Current Opinion in Biotechnology. 19: 414-9. PMID 18761088 DOI: 10.1016/J.Copbio.2008.08.008 |
0.615 |
|
| 2008 |
Cann AF, Liao JC. Production of 2-methyl-1-butanol in engineered Escherichia coli. Applied Microbiology and Biotechnology. 81: 89-98. PMID 18758769 DOI: 10.1007/S00253-008-1631-Y |
0.81 |
|
| 2008 |
Connor MR, Liao JC. Engineering of an Escherichia coli strain for the production of 3-methyl-1-butanol. Applied and Environmental Microbiology. 74: 5769-75. PMID 18676713 DOI: 10.1128/Aem.00468-08 |
0.725 |
|
| 2008 |
Bernstein JR, Bulter T, Liao JC. Transfer of the high-GC cyclohexane carboxylate degradation pathway from Rhodopseudomonas palustris to Escherichia coli for production of biotin. Metabolic Engineering. 10: 131-40. PMID 18396082 DOI: 10.1016/J.Ymben.2008.02.001 |
0.7 |
|
| 2008 |
Atsumi S, Hanai T, Liao JC. Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels. Nature. 451: 86-9. PMID 18172501 DOI: 10.1038/Nature06450 |
0.594 |
|
| 2008 |
Jarboe LR, Hyduke DR, Tran LM, Chou KJ, Liao JC. Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis. The Journal of Biological Chemistry. 283: 5148-57. PMID 18070885 DOI: 10.1074/Jbc.M706018200 |
0.799 |
|
| 2008 |
Chou KJ, Dodd J, Liao JC. Interactions of nitrosylhemoglobin and carboxyhemoglobin with erythrocyte. Nitric Oxide : Biology and Chemistry / Official Journal of the Nitric Oxide Society. 18: 122-35. PMID 18047843 DOI: 10.1016/J.Niox.2007.10.006 |
0.529 |
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| 2008 |
Sriram G, Rahib L, He JS, Campos AE, Parr LS, Liao JC, Dipple KM. Global metabolic effects of glycerol kinase overexpression in rat hepatoma cells. Molecular Genetics and Metabolism. 93: 145-59. PMID 18029214 DOI: 10.1016/J.Ymgme.2007.09.008 |
0.361 |
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| 2008 |
Atsumi S, Cann AF, Connor MR, Shen CR, Smith KM, Brynildsen MP, Chou KJ, Hanai T, Liao JC. Metabolic engineering of Escherichia coli for 1-butanol production. Metabolic Engineering. 10: 305-11. PMID 17942358 DOI: 10.1016/J.Ymben.2007.08.003 |
0.797 |
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| 2007 |
Hanai T, Atsumi S, Liao JC. Engineered synthetic pathway for isopropanol production in Escherichia coli. Applied and Environmental Microbiology. 73: 7814-8. PMID 17933911 DOI: 10.1128/Aem.01140-07 |
0.622 |
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| 2007 |
Wong WW, Tsai TY, Liao JC. Single-cell zeroth-order protein degradation enhances the robustness of synthetic oscillator. Molecular Systems Biology. 3: 130. PMID 17667952 DOI: 10.1038/Msb4100172 |
0.301 |
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| 2007 |
Watanabe J, Chou KJ, Liao JC, Miao Y, Meng HH, Ge H, Grijalva V, Hama S, Kozak K, Buga G, Whitelegge JP, Lee TD, Farias-Eisner R, Navab M, Fogelman AM, et al. Differential association of hemoglobin with proinflammatory high density lipoproteins in atherogenic/hyperlipidemic mice. A novel biomarker of atherosclerosis. The Journal of Biological Chemistry. 282: 23698-707. PMID 17556366 DOI: 10.1074/Jbc.M702163200 |
0.521 |
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| 2007 |
Brynildsen MP, Wu TY, Jang SS, Liao JC. Biological network mapping and source signal deduction. Bioinformatics (Oxford, England). 23: 1783-91. PMID 17495996 DOI: 10.1093/Bioinformatics/Btm246 |
0.647 |
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| 2007 |
Hyduke DR, Jarboe LR, Tran LM, Chou KJ, Liao JC. Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 104: 8484-9. PMID 17494765 DOI: 10.1073/Pnas.0610888104 |
0.79 |
|
| 2007 |
Bernstein JR, Bulter T, Shen CR, Liao JC. Directed evolution of ribosomal protein S1 for enhanced translational efficiency of high GC Rhodopseudomonas palustris DNA in Escherichia coli. The Journal of Biological Chemistry. 282: 18929-36. PMID 17412688 DOI: 10.1074/Jbc.M701395200 |
0.659 |
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| 2007 |
Rahib L, MacLennan NK, Horvath S, Liao JC, Dipple KM. Glycerol kinase deficiency alters expression of genes involved in lipid metabolism, carbohydrate metabolism, and insulin signaling. European Journal of Human Genetics : Ejhg. 15: 646-57. PMID 17406644 DOI: 10.1038/Sj.Ejhg.5201801 |
0.333 |
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| 2007 |
Han TH, Perloff JK, Liao JC. Nitric oxide metabolism in adults with cyanotic congenital heart disease. The American Journal of Cardiology. 99: 691-5. PMID 17317373 DOI: 10.1016/J.Amjcard.2006.10.024 |
0.517 |
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| 2006 |
Braatsch S, Bernstein JR, Lessner F, Morgan J, Liao JC, Harwood CS, Beatty JT. Rhodopseudomonas palustris CGA009 has two functional ppsR genes, each of which encodes a repressor of photosynthesis gene expression. Biochemistry. 45: 14441-51. PMID 17128983 DOI: 10.1021/Bi061074B |
0.655 |
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| 2006 |
Brynildsen MP, Tran LM, Liao JC. A Gibbs sampler for the identification of gene expression and network connectivity consistency. Bioinformatics (Oxford, England). 22: 3040-6. PMID 17060361 DOI: 10.1093/Bioinformatics/Btl541 |
0.722 |
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| 2006 |
Brynildsen MP, Tran LM, Liao JC. Versatility and connectivity efficiency of bipartite transcription networks. Biophysical Journal. 91: 2749-59. PMID 16815895 DOI: 10.1529/Biophysj.106.082560 |
0.712 |
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| 2006 |
Galbraith SJ, Tran LM, Liao JC. Transcriptome network component analysis with limited microarray data. Bioinformatics (Oxford, England). 22: 1886-94. PMID 16766556 DOI: 10.1093/Bioinformatics/Btl279 |
0.564 |
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| 2006 |
Wong WW, Liao JC. The design of intracellular oscillators that interact with metabolism. Cellular and Molecular Life Sciences : Cmls. 63: 1215-20. PMID 16649146 DOI: 10.1007/S00018-005-5611-4 |
0.336 |
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| 2006 |
MacLennan NK, Rahib L, Shin C, Fang Z, Horvath S, Dean J, Liao JC, McCabe ER, Dipple KM. Targeted disruption of glycerol kinase gene in mice: expression analysis in liver shows alterations in network partners related to glycerol kinase activity. Human Molecular Genetics. 15: 405-15. PMID 16368706 DOI: 10.1093/Hmg/Ddi457 |
0.704 |
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| 2006 |
Liao JC. Systems Biology: Where Does Chemical Engineering Stand? Journal of the Chinese Institute of Chemical Engineers. 37: 103-106. DOI: 10.6967/Jcice.200601.0103 |
0.306 |
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| 2005 |
Boscolo R, Sabatti C, Liao JC, Roychowdhury VP. A generalized framework for network component analysis. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 2: 289-301. PMID 17044167 DOI: 10.1109/Tcbb.2005.47 |
0.317 |
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| 2005 |
Brynildsen MP, Wong WW, Liao JC. Transcriptional regulation and metabolism. Biochemical Society Transactions. 33: 1423-6. PMID 16246136 DOI: 10.1042/Bst20051423 |
0.682 |
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| 2005 |
Kao KC, Tran LM, Liao JC. A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis. The Journal of Biological Chemistry. 280: 36079-87. PMID 16141204 DOI: 10.1074/Jbc.M508202200 |
0.727 |
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| 2005 |
Rohlin L, Trent JD, Salmon K, Kim U, Gunsalus RP, Liao JC. Heat shock response of Archaeoglobus fulgidus. Journal of Bacteriology. 187: 6046-57. PMID 16109946 DOI: 10.1128/Jb.187.17.6046-6057.2005 |
0.752 |
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| 2005 |
Yang YL, Liao JC. Determination of functional interactions among signalling pathways in Escherichia coli K-12. Metabolic Engineering. 7: 280-90. PMID 16002309 DOI: 10.1016/J.Ymben.2005.05.002 |
0.306 |
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| 2005 |
Yang YL, Suen J, Brynildsen MP, Galbraith SJ, Liao JC. Inferring yeast cell cycle regulators and interactions using transcription factor activities. Bmc Genomics. 6: 90. PMID 15949038 DOI: 10.1186/1471-2164-6-90 |
0.628 |
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| 2005 |
Sriram G, Martinez JA, McCabe ER, Liao JC, Dipple KM. Single-gene disorders: what role could moonlighting enzymes play? American Journal of Human Genetics. 76: 911-24. PMID 15877277 DOI: 10.1086/430799 |
0.316 |
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| 2005 |
Fung E, Wong WW, Suen JK, Bulter T, Lee SG, Liao JC. A synthetic gene-metabolic oscillator. Nature. 435: 118-22. PMID 15875027 DOI: 10.1038/Nature03508 |
0.596 |
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| 2005 |
Tran LM, Brynildsen MP, Kao KC, Suen JK, Liao JC. gNCA: a framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation. Metabolic Engineering. 7: 128-41. PMID 15781421 DOI: 10.1016/J.Ymben.2004.12.001 |
0.779 |
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| 2005 |
Han TH, Pelling A, Jeon TJ, Gimzewski JK, Liao JC. Erythrocyte nitric oxide transport reduced by a submembrane cytoskeletal barrier. Biochimica Et Biophysica Acta. 1723: 135-42. PMID 15777627 DOI: 10.1016/J.Bbagen.2005.01.013 |
0.486 |
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| 2005 |
Zhou B, Beckwith D, Jarboe LR, Liao JC. Markov Chain modeling of pyelonephritis-associated pili expression in uropathogenic Escherichia coli. Biophysical Journal. 88: 2541-53. PMID 15681643 DOI: 10.1529/Biophysj.104.052126 |
0.645 |
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| 2005 |
Hyduke DR, Liao JC. Analysis of nitric oxide donor effectiveness in resistance vessels. American Journal of Physiology. Heart and Circulatory Physiology. 288: H2390-9. PMID 15653763 DOI: 10.1152/Ajpheart.00990.2004 |
0.661 |
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| 2005 |
Sabatti C, Rohlin L, Lange K, Liao JC. Vocabulon: a dictionary model approach for reconstruction and localization of transcription factor binding sites. Bioinformatics (Oxford, England). 21: 922-31. PMID 15509602 DOI: 10.1093/Bioinformatics/Bti083 |
0.736 |
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| 2005 |
Han TH, Pelling A, Jeon T, Gimzewski JK, Liao JC. Corrigendum to “Erythrocyte nitric oxide transport reduced by a submembrane cytoskeletal barrier” [Biochim. Biophys. Acta 1723 (2005) 135_142] Biochimica Et Biophysica Acta (Bba) - General Subjects. 1726: 336. DOI: 10.1016/J.Bbagen.2005.11.001 |
0.456 |
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| 2004 |
Jarboe LR, Beckwith D, Liao JC. Stochastic modeling of the phase-variable pap operon regulation in uropathogenic Escherichia coli. Biotechnology and Bioengineering. 88: 189-203. PMID 15449298 DOI: 10.1002/Bit.20228 |
0.644 |
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| 2004 |
Liao JC. Custom design of metabolism. Nature Biotechnology. 22: 823-4. PMID 15229541 DOI: 10.1038/Nbt0704-823 |
0.319 |
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| 2004 |
Han TH, Fukuto JM, Liao JC. Reductive nitrosylation and S-nitrosation of hemoglobin in inhomogeneous nitric oxide solutions. Nitric Oxide : Biology and Chemistry / Official Journal of the Nitric Oxide Society. 10: 74-82. PMID 15135360 DOI: 10.1016/J.Niox.2004.03.003 |
0.498 |
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| 2004 |
Bulter T, Lee SG, Wong WW, Fung E, Connor MR, Liao JC. Design of artificial cell-cell communication using gene and metabolic networks. Proceedings of the National Academy of Sciences of the United States of America. 101: 2299-304. PMID 14983004 DOI: 10.1073/Pnas.0306484101 |
0.759 |
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| 2004 |
Kao KC, Yang YL, Boscolo R, Sabatti C, Roychowdhury V, Liao JC. Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis. Proceedings of the National Academy of Sciences of the United States of America. 101: 641-6. PMID 14694202 DOI: 10.1073/Pnas.0305287101 |
0.623 |
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| 2003 |
Bulter T, Bernstein JR, Liao JC. A perspective of metabolic engineering strategies: moving up the systems hierarchy. Biotechnology and Bioengineering. 84: 815-21. PMID 14708122 DOI: 10.1002/Bit.10845 |
0.693 |
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| 2003 |
Liao JC, Boscolo R, Yang YL, Tran LM, Sabatti C, Roychowdhury VP. Network component analysis: reconstruction of regulatory signals in biological systems. Proceedings of the National Academy of Sciences of the United States of America. 100: 15522-7. PMID 14673099 DOI: 10.1073/Pnas.2136632100 |
0.535 |
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| 2003 |
Hyduke DR, Rohlin L, Kao KC, Liao JC. A software package for cDNA microarray data normalization and assessing confidence intervals. Omics : a Journal of Integrative Biology. 7: 227-34. PMID 14583113 DOI: 10.1089/153623103322452369 |
0.762 |
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| 2003 |
Han TH, Qamirani E, Nelson AG, Hyduke DR, Chaudhuri G, Kuo L, Liao JC. Regulation of nitric oxide consumption by hypoxic red blood cells. Proceedings of the National Academy of Sciences of the United States of America. 100: 12504-9. PMID 14523233 DOI: 10.1073/Pnas.2133409100 |
0.741 |
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| 2003 |
Wang C, Han TH, Liao JC. Sequence Analysis for Metabolic Evolution of Archaeoglobus fulgidus Geranylgeranyl Diphosphate Synthase in Escherichia coli for Carotenoid Biosynthesis Journal of the Chinese Institute of Chemical Engineers. 34: 47-56. DOI: 10.6967/Jcice.200301.0047 |
0.752 |
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| 2002 |
Hatzimanikatis V, Liao JC. A memorial review of Jay Bailey's contribution in prokaryotic metabolic engineering. Biotechnology and Bioengineering. 79: 504-8. PMID 12209822 DOI: 10.1002/Bit.10406 |
0.312 |
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| 2002 |
Joshi MS, Ferguson TB, Han TH, Hyduke DR, Liao JC, Rassaf T, Bryan N, Feelisch M, Lancaster JR. Nitric oxide is consumed, rather than conserved, by reaction with oxyhemoglobin under physiological conditions. Proceedings of the National Academy of Sciences of the United States of America. 99: 10341-6. PMID 12124398 DOI: 10.1073/Pnas.152149699 |
0.719 |
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| 2002 |
Sabatti C, Rohlin L, Oh MK, Liao JC. Co-expression pattern from DNA microarray experiments as a tool for operon prediction. Nucleic Acids Research. 30: 2886-93. PMID 12087173 DOI: 10.1093/Nar/Gkf388 |
0.783 |
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| 2002 |
Han TH, Hyduke DR, Vaughn MW, Fukuto JM, Liao JC. Nitric oxide reaction with red blood cells and hemoglobin under heterogeneous conditions. Proceedings of the National Academy of Sciences of the United States of America. 99: 7763-8. PMID 12032357 DOI: 10.1073/Pnas.122118299 |
0.735 |
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| 2002 |
Oh MK, Rohlin L, Kao KC, Liao JC. Global expression profiling of acetate-grown Escherichia coli. The Journal of Biological Chemistry. 277: 13175-83. PMID 11815613 DOI: 10.1074/Jbc.M110809200 |
0.81 |
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| 2002 |
Rohlin L, Oh M, Liao JC. DNA Microarray for Microbial Biotechnology: Gene Expression Profiles in Escherichia coli during Protein Overexpression Journal of the Chinese Institute of Chemical Engineers. 33: 103-112. DOI: 10.6967/Jcice.200201.0103 |
0.801 |
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| 2001 |
Farmer WR, Liao JC. Acetate-inducible protein overexpression from the glnAp2 promoter of Escherichia coli. Biotechnology and Bioengineering. 75: 504-9. PMID 11745125 DOI: 10.1002/Bit.10049 |
0.779 |
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| 2001 |
Huang KT, Han TH, Hyduke DR, Vaughn MW, Van Herle H, Hein TW, Zhang C, Kuo L, Liao JC. Modulation of nitric oxide bioavailability by erythrocytes. Proceedings of the National Academy of Sciences of the United States of America. 98: 11771-6. PMID 11573011 DOI: 10.1073/Pnas.201276698 |
0.714 |
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| 2001 |
Wang CW, Liao JC. Alteration of product specificity of Rhodobacter sphaeroides phytoene desaturase by directed evolution. The Journal of Biological Chemistry. 276: 41161-4. PMID 11526111 DOI: 10.1074/Jbc.M105786200 |
0.719 |
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| 2001 |
Tseng GC, Oh MK, Rohlin L, Liao JC, Wong WH. Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Research. 29: 2549-57. PMID 11410663 DOI: 10.1093/Nar/29.12.2549 |
0.778 |
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| 2001 |
Rohlin L, Oh MK, Liao JC. Microbial pathway engineering for industrial processes: evolution, combinatorial biosynthesis and rational design. Current Opinion in Microbiology. 4: 330-5. PMID 11378488 DOI: 10.1016/S1369-5274(00)00213-7 |
0.801 |
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| 2001 |
Farmer WR, Liao JC. Precursor balancing for metabolic engineering of lycopene production in Escherichia coli. Biotechnology Progress. 17: 57-61. PMID 11170480 DOI: 10.1021/Bp000137T |
0.788 |
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| 2001 |
Barkovich R, Liao JC. Metabolic engineering of isoprenoids Metabolic Engineering. 3: 27-39. PMID 11162230 DOI: 10.1006/Mben.2000.0168 |
0.41 |
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| 2000 |
Wang C, Oh MK, Liao JC. Directed evolution of metabolically engineered Escherichia coli for carotenoid production. Biotechnology Progress. 16: 922-6. PMID 11101317 DOI: 10.1021/Bp000124F |
0.783 |
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| 2000 |
Oh MK, Liao JC. DNA microarray detection of metabolic responses to protein overproduction in Escherichia coli. Metabolic Engineering. 2: 201-9. PMID 11056062 DOI: 10.1006/Mben.2000.0149 |
0.564 |
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| 2000 |
Farmer WR, Liao JC. Improving lycopene production in Escherichia coli by engineering metabolic control. Nature Biotechnology. 18: 533-7. PMID 10802621 DOI: 10.1038/75398 |
0.79 |
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| 2000 |
Oh MK, Liao JC. Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli. Biotechnology Progress. 16: 278-86. PMID 10753455 DOI: 10.1021/Bp000002N |
0.572 |
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| 1999 |
Liao JC, Oh MK. Toward predicting metabolic fluxes in metabolically engineered strains. Metabolic Engineering. 1: 214-23. PMID 10937936 DOI: 10.1006/Mben.1999.0121 |
0.561 |
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| 1999 |
Wang CW, Oh MK, Liao JC. Engineered isoprenoid pathway enhances astaxanthin production in Escherichia coli. Biotechnology and Bioengineering. 62: 235-41. PMID 10099534 DOI: 10.1002/(Sici)1097-0290(19990120)62:2<235::Aid-Bit14>3.0.Co;2-U |
0.627 |
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| 1999 |
Lee B, Yen J, Yang L, Liao JC. Incorporating qualitative knowledge in enzyme kinetic models using fuzzy logic. Biotechnology and Bioengineering. 62: 722-9. PMID 9951527 DOI: 10.1002/(Sici)1097-0290(19990320)62:6<722::Aid-Bit11>3.0.Co;2-U |
0.331 |
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| 1999 |
Liao JC. Inverse flux analysis Journal of Biotechnology. 71: 259-262. DOI: 10.1016/S0168-1656(99)00031-0 |
0.36 |
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| 1998 |
Chang CI, Liao JC, Kuo L. Arginase modulates nitric oxide production in activated macrophages American Journal of Physiology - Heart and Circulatory Physiology. 274. PMID 9458885 DOI: 10.1152/Ajpheart.1998.274.1.H342 |
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| 1998 |
Liao JC, Delgado J. Flux calculation using metabolic control constraints Biotechnology Progress. 14: 554-560. DOI: 10.1021/Bp980056L |
0.33 |
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| 1997 |
Delgado J, Liao JC. Inverse flux analysis for reduction of acetate excretion in Escherichia coli Biotechnology Progress. 13: 361-367. PMID 9265774 DOI: 10.1021/Bp970047X |
0.385 |
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| 1997 |
Farmer WR, Liao JC. Reduction of aerobic acetate production by Escherichia coli. Applied and Environmental Microbiology. 63: 3205-10. PMID 9251207 DOI: 10.1128/Aem.63.8.3205-3210.1997 |
0.785 |
|
| 1996 |
Hung S, Liao JC. Effects of ultraviolet light irradiation in biotreatment of organophosphates Applied Biochemistry and Biotechnology. 56: 37-47. PMID 8607607 DOI: 10.1007/Bf02787868 |
0.32 |
|
| 1996 |
Farmer WR, Liao JC. Progress in metabolic engineering Current Opinion in Biotechnology. 7: 198-204. DOI: 10.1016/S0958-1669(96)80013-9 |
0.785 |
|
| 1996 |
Tan HL, Delgado J, Liao JC. Extension of metabolic control analysis to chemostat bioreactors Aiche Journal. 42: 1454-1464. DOI: 10.1002/Aic.690420526 |
0.333 |
|
| 1995 |
Delgado J, Liao JC. Control of metabolic pathways by time-scale separation Biosystems. 36: 55-70. PMID 8527696 DOI: 10.1016/0303-2647(95)01528-S |
0.321 |
|
| 1994 |
Patnaik R, Liao JC. Engineering of Escherichia coli central metabolism for aromatic metabolite production with near theoretical yield Applied and Environmental Microbiology. 60: 3903-3908. PMID 7993080 DOI: 10.1128/Aem.60.11.3903-3908.1994 |
0.439 |
|
| 1994 |
Liao JC, Chao YP, Patnaik R. Alteration of the biochemical valves in the central metabolism of escherichia coli Annals of the New York Academy of Sciences. 745: 21-34. PMID 7832509 DOI: 10.1111/J.1749-6632.1994.Tb44361.X |
0.423 |
|
| 1993 |
Chao YP, Liao JC. Alteration of growth yield by overexpression of phosphoenolpyruvate carboxylase and phosphoenolpyruvate carboxykinase in Escherichia coli Applied and Environmental Microbiology. 59: 4261-4265. PMID 8285716 DOI: 10.1128/Aem.59.12.4261-4265.1993 |
0.382 |
|
| 1993 |
Chao YP, Patnaik R, Roof WD, Young RF, Liao JC. Control of gluconeogenic growth by pps and pck in Escherichia coli Journal of Bacteriology. 175: 6939-6944. PMID 8226637 DOI: 10.1128/Jb.175.21.6939-6944.1993 |
0.312 |
|
| 1993 |
Liao JC. Modelling and analysis of metabolic pathways Current Opinion in Biotechnology. 4: 211-216. PMID 7763572 DOI: 10.1016/0958-1669(93)90127-I |
0.367 |
|
| 1993 |
Liao JC, Delgado J. Advances in metabolic control analysis Biotechnology Progress. 9: 221-233. DOI: 10.1021/Bp00021A001 |
0.328 |
|
| 1992 |
Delgado J, Liao JC. Determination of flux control coefficients from transient metabolite concentrations Biochemical Journal. 282: 919-927. PMID 1554375 DOI: 10.1042/Bj2820919 |
0.351 |
|
| 1992 |
Liao JC, Delgado J. Dynamic metabolic control theory: A methodology for investigating metabolic regulation using transient metabolic data Annals of the New York Academy of Sciences. 665: 27-38. PMID 1416609 DOI: 10.1111/J.1749-6632.1992.Tb42571.X |
0.317 |
|
| 1992 |
Patnaik R, Roof WD, Young RF, Liao JC. Stimulation of glucose catabolism in Escherichia coli by a potential futile cycle Journal of Bacteriology. 174: 7527-7532. PMID 1332936 DOI: 10.1128/Jb.174.23.7527-7532.1992 |
0.309 |
|
| 1991 |
Delgado JP, Liao JC. Identifying rate-controlling enzymes in metabolic pathways without kinetic parameters Biotechnology Progress. 7: 15-20. DOI: 10.1021/Bp00007A003 |
0.34 |
|
| 1988 |
Liao JC, Lightfoot EN. Lumping analysis of biochemical reaction systems with time scale separation. Biotechnology and Bioengineering. 31: 869-79. PMID 18584692 DOI: 10.1002/Bit.260310815 |
0.541 |
|
| 1988 |
Liao JC, Lightfoot EN, Jolly SO, Jacobson GK. Application of characteristic reaction paths: Rate-limiting capability of phosphofructokinase in yeast fermentation. Biotechnology and Bioengineering. 31: 855-68. PMID 18584691 DOI: 10.1002/Bit.260310814 |
0.57 |
|
| 1988 |
Liao JC, Lightfoot EN. Characteristic reaction paths of biochemical reaction systems with time scale separation. Biotechnology and Bioengineering. 31: 847-54. PMID 18584690 DOI: 10.1002/Bit.260310813 |
0.548 |
|
| 1987 |
Liao JC, Lightfoot EN. Extending the quasi-steady state concept to analysis of metabolic networks. Journal of Theoretical Biology. 126: 253-73. PMID 3657233 DOI: 10.1016/S0022-5193(87)80234-5 |
0.595 |
|
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