| Year |
Citation |
Score |
| 2024 |
Vollen K, Zhao C, Alonso JM, Stepanova AN. Sourcing DNA parts for synthetic biology applications in plants. Current Opinion in Biotechnology. 87: 103140. PMID 38723389 DOI: 10.1016/j.copbio.2024.103140 |
0.578 |
|
| 2024 |
Yaschenko AE, Alonso JM, Stepanova AN. Arabidopsis as a model for translational research. The Plant Cell. PMID 38411602 DOI: 10.1093/plcell/koae065 |
0.613 |
|
| 2024 |
Fernandez-Moreno JP, Yaschenko AE, Neubauer M, Marchi AJ, Zhao C, Ascencio-Ibanez JT, Alonso JM, Stepanova AN. A rapid and scalable approach to build synthetic repetitive hormone-responsive promoters. Plant Biotechnology Journal. PMID 38379432 DOI: 10.1111/pbi.14313 |
0.58 |
|
| 2022 |
Yaschenko AE, Fenech M, Mazzoni-Putman S, Alonso JM, Stepanova AN. Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help? Current Opinion in Plant Biology. 68: 102241. PMID 35700675 DOI: 10.1016/j.pbi.2022.102241 |
0.627 |
|
| 2022 |
Chen H, Alonso JM, Stepanova AN. A Ribo-Seq Method to Study Genome-Wide Translational Regulation in Plants. Methods in Molecular Biology (Clifton, N.J.). 2494: 61-98. PMID 35467201 DOI: 10.1007/978-1-0716-2297-1_6 |
0.644 |
|
| 2021 |
Chen H, Bullock DA, Alonso JM, Stepanova AN. To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses. Plants (Basel, Switzerland). 11. PMID 35009037 DOI: 10.3390/plants11010033 |
0.642 |
|
| 2021 |
Mazzoni-Putman SM, Brumos J, Zhao C, Alonso JM, Stepanova AN. Auxin Interactions with Other Hormones in Plant Development. Cold Spring Harbor Perspectives in Biology. PMID 33903155 DOI: 10.1101/cshperspect.a039990 |
0.665 |
|
| 2021 |
Zhao C, Yaschenko A, Alonso JM, Stepanova AN. Leveraging synthetic biology approaches in plant hormone research. Current Opinion in Plant Biology. 60: 101998. PMID 33476945 DOI: 10.1016/j.pbi.2020.101998 |
0.615 |
|
| 2020 |
Brumos J, Bobay BG, Clark CA, Alonso JM, Stepanova AN. Structure-function analysis of interallelic complementation in ROOTY transheterozygotes. Plant Physiology. PMID 32350121 DOI: 10.1104/Pp.20.00310 |
0.636 |
|
| 2020 |
Barro-Trastoy D, Carrera E, Baños J, Palau-Rodríguez J, Ruiz-Rivero O, Tornero P, Alonso JM, López-Díaz I, Gómez MD, Pérez-Amador MA. Regulation of ovule initiation by gibberellins and brassinosteroids in tomato and Arabidopsis: two plant species, two molecular mechanisms. The Plant Journal : For Cell and Molecular Biology. PMID 31930587 DOI: 10.1111/tpj.14684 |
0.323 |
|
| 2019 |
Brumos J, Zhao C, Gong Y, Soriano D, Patel AP, Perez-Amador MA, Stepanova AN, Alonso JM. An improved recombineering toolset for plants. The Plant Cell. PMID 31666295 DOI: 10.1105/tpc.19.00431 |
0.6 |
|
| 2019 |
Bagley MC, Stepanova AN, Ekelöf M, Alonso JM, Muddiman DC. Development of a Relative Quantification Method for IR-MALDESI Mass Spectrometry Imaging of Arabidopsis Root Seedlings. Rapid Communications in Mass Spectrometry : Rcm. PMID 31658400 DOI: 10.1002/rcm.8616 |
0.538 |
|
| 2019 |
Perkins P, Mazzoni-Putman S, Stepanova A, Alonso J, Heber S. RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data. Bmc Genomics. 20: 422. PMID 31167636 DOI: 10.1186/S12864-019-5700-7 |
0.554 |
|
| 2019 |
Stepanova AN, Alonso JM. From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration. The Plant Cell. PMID 31068456 DOI: 10.1105/tpc.19.00339 |
0.568 |
|
| 2019 |
Gómez MD, Fuster-Almunia C, Ocaña-Cuesta J, Alonso JM, Pérez-Amador MA. RGL2 controls flower development, ovule number and fertility in Arabidopsis. Plant Science : An International Journal of Experimental Plant Biology. 281: 82-92. PMID 30824064 DOI: 10.1016/j.plantsci.2019.01.014 |
0.344 |
|
| 2018 |
Brumos J, Robles LM, Yun J, Vu TC, Jackson S, Alonso JM, Stepanova AN. Local Auxin Biosynthesis Is a Key Regulator of Plant Development. Developmental Cell. 47: 306-318.e5. PMID 30415657 DOI: 10.1016/j.devcel.2018.09.022 |
0.653 |
|
| 2018 |
Gomez MD, Barro-Trastoy D, Escoms E, Saura-Sánchez M, Sánchez I, Briones-Moreno A, Vera-Sirera F, Carrera E, Ripoll JJ, Yanofsky MF, Lopez-Diaz I, Alonso JM, Perez-Amador MA. Gibberellins negatively modulate ovule number in plants. Development (Cambridge, England). PMID 29914969 DOI: 10.1242/dev.163865 |
0.335 |
|
| 2018 |
Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Voß U, Alonso J, Stepanova A, Yun J, et al. Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nature Communications. 9: 1818. PMID 29720582 DOI: 10.1038/S41467-018-04281-X |
0.564 |
|
| 2018 |
Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Traini R, Truskina J, Leftley N, Hanlon M, Swarup K, Rashed A, Voß U, Alonso J, Stepanova A, Yun J, et al. A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate. Nature Communications. 9: 1409. PMID 29651114 DOI: 10.1038/S41467-018-03851-3 |
0.637 |
|
| 2017 |
Estrada-Johnson E, Csukasi F, Pizarro CM, Vallarino JG, Kiryakova Y, Vioque A, Brumos J, Medina-Escobar N, Botella MA, Alonso JM, Fernie AR, Sánchez-Sevilla JF, Osorio S, Valpuesta V. Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science. 8: 889. PMID 28611805 DOI: 10.3389/fpls.2017.00889 |
0.339 |
|
| 2017 |
Merchante C, Stepanova AN, Alonso JM. Translation regulation in plants: an interesting past, an exciting present, and a promising future. The Plant Journal : For Cell and Molecular Biology. PMID 28244193 DOI: 10.1111/tpj.13520 |
0.629 |
|
| 2016 |
Stepanova AN, Alonso JM. Cutting Out the Middle Man in Light-Hormone Interactions. Developmental Cell. 39: 524-526. PMID 27923118 DOI: 10.1016/j.devcel.2016.11.013 |
0.575 |
|
| 2016 |
Stepanova AN, Alonso JM. Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27651487 DOI: 10.1073/pnas.1613506113 |
0.516 |
|
| 2016 |
Hu Q, Merchante C, Stepanova A, Alonso J, Heber S. Genome-wide Search for Translated Upstream Open Reading Frames in Arabidopsis thaliana. Ieee Transactions On Nanobioscience. PMID 26886998 DOI: 10.1109/Tnb.2016.2516950 |
0.592 |
|
| 2015 |
Merchante C, Brumos J, Yun J, Hu Q, Spencer KR, Enríquez P, Binder BM, Heber S, Stepanova AN, Alonso JM. Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2. Cell. 163: 684-97. PMID 26496608 DOI: 10.1016/J.Cell.2015.09.036 |
0.664 |
|
| 2015 |
Moreno-Risueno MA, Sozzani R, Yardımcı GG, Petricka JJ, Vernoux T, Blilou I, Alonso J, Winter CM, Ohler U, Scheres B, Benfey PN. Transcriptional control of tissue formation throughout root development. Science (New York, N.Y.). 350: 426-30. PMID 26494755 DOI: 10.1126/Science.Aad1171 |
0.384 |
|
| 2015 |
Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, Brkljacic J, Browse J, Chapple C, Colot V, Cutler S, Dangl J, Ehrhardt D, Friesner JD, Frommer WB, Grotewold E, et al. 50 years of Arabidopsis research: highlights and future directions. The New Phytologist. PMID 26465351 DOI: 10.1111/Nph.13687 |
0.404 |
|
| 2015 |
Worden N, Wilkop TE, Esteve VE, Jeannotte R, Lathe R, Vernhettes S, Weimer B, Hicks G, Alonso J, Labavitch J, Persson S, Ehrhardt D, Drakakaki G. CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1. Plant Physiology. 167: 381-93. PMID 25535279 DOI: 10.1104/Pp.114.249003 |
0.323 |
|
| 2015 |
Alonso JM, Stepanova AN. A recombineering-based gene tagging system for Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 1227: 233-43. PMID 25239749 DOI: 10.1007/978-1-4939-1652-8_11 |
0.591 |
|
| 2014 |
Catalá R, López-Cobollo R, Mar Castellano M, Angosto T, Alonso JM, Ecker JR, Salinas J. The Arabidopsis 14-3-3 protein RARE COLD INDUCIBLE 1A links low-temperature response and ethylene biosynthesis to regulate freezing tolerance and cold acclimation. The Plant Cell. 26: 3326-42. PMID 25122152 DOI: 10.1105/Tpc.114.127605 |
0.563 |
|
| 2014 |
Alonso JM, Stepanova AN. Arabidopsis transformation with large bacterial artificial chromosomes. Methods in Molecular Biology (Clifton, N.J.). 1062: 271-83. PMID 24057372 DOI: 10.1007/978-1-62703-580-4_15 |
0.605 |
|
| 2014 |
Brumos J, Alonso JM, Stepanova AN. Genetic aspects of auxin biosynthesis and its regulation. Physiologia Plantarum. 151: 3-12. PMID 24007561 DOI: 10.1111/ppl.12098 |
0.683 |
|
| 2013 |
Robert HS, Grones P, Stepanova AN, Robles LM, Lokerse AS, Alonso JM, Weijers D, Friml J. Local auxin sources orient the apical-basal axis in Arabidopsis embryos. Current Biology : Cb. 23: 2506-12. PMID 24291089 DOI: 10.1016/J.Cub.2013.09.039 |
0.613 |
|
| 2013 |
Pietra S, Gustavsson A, Kiefer C, Kalmbach L, Hörstedt P, Ikeda Y, Stepanova AN, Alonso JM, Grebe M. Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity. Nature Communications. 4: 2779. PMID 24240534 DOI: 10.1038/Ncomms3779 |
0.553 |
|
| 2013 |
Merchante C, Alonso JM, Stepanova AN. Ethylene signaling: simple ligand, complex regulation. Current Opinion in Plant Biology. 16: 554-60. PMID 24012247 DOI: 10.1016/j.pbi.2013.08.001 |
0.618 |
|
| 2013 |
Robles L, Stepanova A, Alonso J. Molecular mechanisms of ethylene-auxin interaction. Molecular Plant. 6: 1734-7. PMID 23935009 DOI: 10.1093/Mp/Sst113 |
0.663 |
|
| 2013 |
Hill K, Mathews DE, Kim HJ, Street IH, Wildes SL, Chiang YH, Mason MG, Alonso JM, Ecker JR, Kieber JJ, Schaller GE. Functional characterization of type-B response regulators in the Arabidopsis cytokinin response. Plant Physiology. 162: 212-24. PMID 23482873 DOI: 10.1104/Pp.112.208736 |
0.709 |
|
| 2013 |
Kopycki J, Wieduwild E, Kohlschmidt J, Brandt W, Stepanova AN, Alonso JM, Pedras MS, Abel S, Grubb CD. Kinetic analysis of Arabidopsis glucosyltransferase UGT74B1 illustrates a general mechanism by which enzymes can escape product inhibition. The Biochemical Journal. 450: 37-46. PMID 23150922 DOI: 10.1042/Bj20121403 |
0.605 |
|
| 2012 |
Péret B, Swarup K, Ferguson A, Seth M, Yang Y, Dhondt S, James N, Casimiro I, Perry P, Syed A, Yang H, Reemmer J, Venison E, Howells C, Perez-Amador MA, ... ... Alonso J, et al. AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development. The Plant Cell. 24: 2874-85. PMID 22773749 DOI: 10.1105/Tpc.112.097766 |
0.446 |
|
| 2011 |
Stepanova AN, Yun J, Robles LM, Novak O, He W, Guo H, Ljung K, Alonso JM. The Arabidopsis YUCCA1 flavin monooxygenase functions in the indole-3-pyruvic acid branch of auxin biosynthesis. The Plant Cell. 23: 3961-73. PMID 22108406 DOI: 10.1105/Tpc.111.088047 |
0.72 |
|
| 2011 |
He W, Brumos J, Li H, Ji Y, Ke M, Gong X, Zeng Q, Li W, Zhang X, An F, Wen X, Li P, Chu J, Sun X, Yan C, ... ... Alonso JM, et al. A small-molecule screen identifies L-kynurenine as a competitive inhibitor of TAA1/TAR activity in ethylene-directed auxin biosynthesis and root growth in Arabidopsis. The Plant Cell. 23: 3944-60. PMID 22108404 DOI: 10.1105/Tpc.111.089029 |
0.713 |
|
| 2011 |
Stepanova AN, Alonso JM. Bypassing transcription: a shortcut in cytokinin-auxin interactions. Developmental Cell. 21: 608-10. PMID 22014520 DOI: 10.1016/j.devcel.2011.09.016 |
0.606 |
|
| 2011 |
Zhou R, Benavente LM, Stepanova AN, Alonso JM. A recombineering-based gene tagging system for Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 66: 712-23. PMID 21294796 DOI: 10.1111/j.1365-313X.2011.04524.x |
0.58 |
|
| 2009 |
Tsuchisaka A, Yu G, Jin H, Alonso JM, Ecker JR, Zhang X, Gao S, Theologis A. A combinatorial interplay among the 1-aminocyclopropane-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana. Genetics. 183: 979-1003. PMID 19752216 DOI: 10.1534/Genetics.109.107102 |
0.626 |
|
| 2009 |
Stepanova AN, Alonso JM. Ethylene signaling and response: where different regulatory modules meet. Current Opinion in Plant Biology. 12: 548-55. PMID 19709924 DOI: 10.1016/j.pbi.2009.07.009 |
0.627 |
|
| 2009 |
Ikeda Y, Men S, Fischer U, Stepanova AN, Alonso JM, Ljung K, Grebe M. Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis. Nature Cell Biology. 11: 731-8. PMID 19448626 DOI: 10.1038/Ncb1879 |
0.59 |
|
| 2008 |
Stepanova AN, Robertson-Hoyt J, Yun J, Benavente LM, Xie DY, Dolezal K, Schlereth A, Jürgens G, Alonso JM. TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell. 133: 177-91. PMID 18394997 DOI: 10.1016/J.Cell.2008.01.047 |
0.747 |
|
| 2008 |
Hu J, Mitchum MG, Barnaby N, Ayele BT, Ogawa M, Nam E, Lai WC, Hanada A, Alonso JM, Ecker JR, Swain SM, Yamaguchi S, Kamiya Y, Sun TP. Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis. The Plant Cell. 20: 320-36. PMID 18310462 DOI: 10.1105/Tpc.107.057752 |
0.533 |
|
| 2008 |
Leivar P, Monte E, Al-Sady B, Carle C, Storer A, Alonso JM, Ecker JR, Quail PH. The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. The Plant Cell. 20: 337-52. PMID 18252845 DOI: 10.1105/Tpc.107.052142 |
0.498 |
|
| 2007 |
Chekanova JA, Gregory BD, Reverdatto SV, Chen H, Kumar R, Hooker T, Yazaki J, Li P, Skiba N, Peng Q, Alonso J, Brukhin V, Grossniklaus U, Ecker JR, Belostotsky DA. Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome Cell. 131: 1340-1353. PMID 18160042 DOI: 10.1016/J.Cell.2007.10.056 |
0.773 |
|
| 2007 |
O'Malley RC, Alonso JM, Kim CJ, Leisse TJ, Ecker JR. An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome. Nature Protocols. 2: 2910-7. PMID 18007627 DOI: 10.1038/Nprot.2007.425 |
0.729 |
|
| 2007 |
Li H, He Z, Lu G, Lee SC, Alonso J, Ecker JR, Luan S. A WD40 domain cyclophilin interacts with histone H3 and functions in gene repression and organogenesis in Arabidopsis. The Plant Cell. 19: 2403-16. PMID 17704213 DOI: 10.1105/Tpc.107.053579 |
0.591 |
|
| 2007 |
Stepanova AN, Yun J, Likhacheva AV, Alonso JM. Multilevel interactions between ethylene and auxin in Arabidopsis roots. The Plant Cell. 19: 2169-85. PMID 17630276 DOI: 10.1105/tpc.107.052068 |
0.689 |
|
| 2006 |
Hutchison CE, Li J, Argueso C, Gonzalez M, Lee E, Lewis MW, Maxwell BB, Perdue TD, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling. The Plant Cell. 18: 3073-87. PMID 17122069 DOI: 10.1105/Tpc.106.045674 |
0.725 |
|
| 2006 |
Kim SA, Punshon T, Lanzirotti A, Li L, Alonso JM, Ecker JR, Kaplan J, Guerinot ML. Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1. Science (New York, N.Y.). 314: 1295-8. PMID 17082420 DOI: 10.1126/Science.1132563 |
0.418 |
|
| 2006 |
Mori IC, Murata Y, Yang Y, Munemasa S, Wang YF, Andreoli S, Tiriac H, Alonso JM, Harper JF, Ecker JR, Kwak JM, Schroeder JI. CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure. Plos Biology. 4: e327. PMID 17032064 DOI: 10.1371/Journal.Pbio.0040327 |
0.495 |
|
| 2006 |
Chen JG, Ullah H, Temple B, Liang J, Guo J, Alonso JM, Ecker JR, Jones AM. RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis. Journal of Experimental Botany. 57: 2697-708. PMID 16829549 DOI: 10.1093/Jxb/Erl035 |
0.612 |
|
| 2006 |
Lariguet P, Schepens I, Hodgson D, Pedmale UV, Trevisan M, Kami C, de Carbonnel M, Alonso JM, Ecker JR, Liscum E, Fankhauser C. PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism. Proceedings of the National Academy of Sciences of the United States of America. 103: 10134-9. PMID 16777956 DOI: 10.1073/Pnas.0603799103 |
0.54 |
|
| 2006 |
Rudella A, Friso G, Alonso JM, Ecker JR, van Wijk KJ. Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. The Plant Cell. 18: 1704-21. PMID 16766689 DOI: 10.1105/Tpc.106.042861 |
0.481 |
|
| 2006 |
Alonso JM, Ecker JR. Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nature Reviews. Genetics. 7: 524-36. PMID 16755288 DOI: 10.1038/Nrg1893 |
0.535 |
|
| 2006 |
Stepanova AN, Alonso JM. PCR-based screening for insertional mutants. Methods in Molecular Biology (Clifton, N.J.). 323: 163-72. PMID 16739576 DOI: 10.1385/1-59745-003-0:163 |
0.59 |
|
| 2005 |
Overvoorde PJ, Okushima Y, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Liu A, Onodera C, Quach H, Smith A, Yu G, Theologis A. Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. The Plant Cell. 17: 3282-300. PMID 16284307 DOI: 10.1105/Tpc.105.036723 |
0.601 |
|
| 2005 |
Mason MG, Mathews DE, Argyros DA, Maxwell BB, Kieber JJ, Alonso JM, Ecker JR, Schaller GE. Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis. The Plant Cell. 17: 3007-18. PMID 16227453 DOI: 10.1105/Tpc.105.035451 |
0.731 |
|
| 2005 |
Nagpal P, Ellis CM, Weber H, Ploense SE, Barkawi LS, Guilfoyle TJ, Hagen G, Alonso JM, Cohen JD, Farmer EE, Ecker JR, Reed JW. Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development (Cambridge, England). 132: 4107-18. PMID 16107481 DOI: 10.1242/Dev.01955 |
0.597 |
|
| 2005 |
Stepanova AN, Hoyt JM, Hamilton AA, Alonso JM. A Link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis. The Plant Cell. 17: 2230-42. PMID 15980261 DOI: 10.1105/tpc.105.033365 |
0.676 |
|
| 2005 |
Wilmoth JC, Wang S, Tiwari SB, Joshi AD, Hagen G, Guilfoyle TJ, Alonso JM, Ecker JR, Reed JW. NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation. The Plant Journal : For Cell and Molecular Biology. 43: 118-30. PMID 15960621 DOI: 10.1111/J.1365-313X.2005.02432.X |
0.559 |
|
| 2005 |
Stepanova AN, Alonso JM. Arabidopsis ethylene signaling pathway. Science's Stke : Signal Transduction Knowledge Environment. 2005: cm4. PMID 15784880 DOI: 10.1126/stke.2762005cm4 |
0.66 |
|
| 2005 |
Stepanova AN, Alonso JM. Ethylene signaling pathway. Science's Stke : Signal Transduction Knowledge Environment. 2005: cm3. PMID 15784879 DOI: 10.1126/stke.2762005cm3 |
0.657 |
|
| 2005 |
Ryu JS, Kim JI, Kunkel T, Kim BC, Cho DS, Hong SH, Kim SH, Fernández AP, Kim Y, Alonso JM, Ecker JR, Nagy F, Lim PO, Song PS, Schäfer E, et al. Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. Cell. 120: 395-406. PMID 15707897 DOI: 10.1016/J.Cell.2004.12.019 |
0.506 |
|
| 2005 |
Okushima Y, Overvoorde PJ, Arima K, Alonso JM, Chan A, Chang C, Ecker JR, Hughes B, Lui A, Nguyen D, Onodera C, Quach H, Smith A, Yu G, Theologis A. Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. The Plant Cell. 17: 444-63. PMID 15659631 DOI: 10.1105/Tpc.104.028316 |
0.595 |
|
| 2005 |
Liu G, Holub EB, Alonso JM, Ecker JR, Fobert PR. An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance. The Plant Journal : For Cell and Molecular Biology. 41: 304-18. PMID 15634206 DOI: 10.1111/J.1365-313X.2004.02296.X |
0.574 |
|
| 2005 |
Prigge MJ, Otsuga D, Alonso JM, Ecker JR, Drews GN, Clark SE. Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. The Plant Cell. 17: 61-76. PMID 15598805 DOI: 10.1105/Tpc.104.026161 |
0.52 |
|
| 2004 |
Alonso JM, Stepanova AN. The ethylene signaling pathway. Science (New York, N.Y.). 306: 1513-5. PMID 15567852 DOI: 10.1126/science.1104812 |
0.624 |
|
| 2004 |
Monte E, Tepperman JM, Al-Sady B, Kaczorowski KA, Alonso JM, Ecker JR, Li X, Zhang Y, Quail PH. The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proceedings of the National Academy of Sciences of the United States of America. 101: 16091-8. PMID 15505214 DOI: 10.1073/Pnas.0407107101 |
0.567 |
|
| 2004 |
Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. Regulation of flowering time in Arabidopsis by K homology domain proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 12759-64. PMID 15310842 DOI: 10.1073/Pnas.0404552101 |
0.574 |
|
| 2004 |
Li H, Johnson P, Stepanova A, Alonso JM, Ecker JR. Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Developmental Cell. 7: 193-204. PMID 15296716 DOI: 10.1016/J.Devcel.2004.07.002 |
0.738 |
|
| 2004 |
Pfund C, Tans-Kersten J, Dunning FM, Alonso JM, Ecker JR, Allen C, Bent AF. Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana. Molecular Plant-Microbe Interactions : Mpmi. 17: 696-706. PMID 15195952 DOI: 10.1094/Mpmi.2004.17.6.696 |
0.519 |
|
| 2004 |
Chen JG, Pandey S, Huang J, Alonso JM, Ecker JR, Assmann SM, Jones AM. GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination. Plant Physiology. 135: 907-15. PMID 15181210 DOI: 10.1104/Pp.104.038992 |
0.522 |
|
| 2004 |
Tyler L, Thomas SG, Hu J, Dill A, Alonso JM, Ecker JR, Sun TP. Della proteins and gibberellin-regulated seed germination and floral development in Arabidopsis. Plant Physiology. 135: 1008-19. PMID 15173565 DOI: 10.1104/Pp.104.039578 |
0.547 |
|
| 2004 |
Page ML, Hamel PP, Gabilly ST, Zegzouti H, Perea JV, Alonso JM, Ecker JR, Theg SM, Christensen SK, Merchant S. A homolog of prokaryotic thiol disulfide transporter CcdA is required for the assembly of the cytochrome b6f complex in Arabidopsis chloroplasts. The Journal of Biological Chemistry. 279: 32474-82. PMID 15159384 DOI: 10.1074/Jbc.M404285200 |
0.494 |
|
| 2004 |
Novillo F, Alonso JM, Ecker JR, Salinas J. CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 101: 3985-90. PMID 15004278 DOI: 10.1073/Pnas.0303029101 |
0.554 |
|
| 2004 |
To JP, Haberer G, Ferreira FJ, Deruère J, Mason MG, Schaller GE, Alonso JM, Ecker JR, Kieber JJ. Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling. The Plant Cell. 16: 658-71. PMID 14973166 DOI: 10.1105/Tpc.018978 |
0.724 |
|
| 2003 |
Catala R, Santos E, Alonso JM, Ecker JR, Martinez-Zapater JM, Salinas J. Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis. The Plant Cell. 15: 2940-51. PMID 14630965 DOI: 10.1105/Tpc.015248 |
0.507 |
|
| 2003 |
Lariguet P, Boccalandro HE, Alonso JM, Ecker JR, Chory J, Casal JJ, Fankhauser C. A growth regulatory loop that provides homeostasis to phytochrome a signaling. The Plant Cell. 15: 2966-78. PMID 14615593 DOI: 10.1105/Tpc.014563 |
0.572 |
|
| 2003 |
Michael TP, Salomé PA, Yu HJ, Spencer TR, Sharp EL, McPeek MA, Alonso JM, Ecker JR, McClung CR. Enhanced fitness conferred by naturally occurring variation in the circadian clock. Science (New York, N.Y.). 302: 1049-53. PMID 14605371 DOI: 10.1126/Science.1082971 |
0.461 |
|
| 2003 |
Alonso JM, Stepanova AN. T-DNA mutagenesis in Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 236: 177-88. PMID 14501065 DOI: 10.1385/1-59259-413-1:177 |
0.582 |
|
| 2003 |
Monte E, Alonso JM, Ecker JR, Zhang Y, Li X, Young J, Austin-Phillips S, Quail PH. Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways. The Plant Cell. 15: 1962-80. PMID 12953104 DOI: 10.1105/Tpc.012971 |
0.578 |
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| 2003 |
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, Gadrinab C, Heller C, Jeske A, Koesema E, Meyers CC, et al. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (New York, N.Y.). 301: 653-7. PMID 12893945 DOI: 10.1126/Science.1086391 |
0.752 |
|
| 2003 |
Alonso JM, Stepanova AN, Solano R, Wisman E, Ferrari S, Ausubel FM, Ecker JR. Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 100: 2992-7. PMID 12606727 DOI: 10.1073/Pnas.0438070100 |
0.791 |
|
| 2003 |
Mackey D, Belkhadir Y, Alonso JM, Ecker JR, Dangl JL. Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance. Cell. 112: 379-89. PMID 12581527 DOI: 10.1016/S0092-8674(03)00040-0 |
0.495 |
|
| 2003 |
Larkin RM, Alonso JM, Ecker JR, Chory J. GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science (New York, N.Y.). 299: 902-6. PMID 12574634 DOI: 10.1126/Science.1079978 |
0.513 |
|
| 2003 |
Ullah H, Chen JG, Temple B, Boyes DC, Alonso JM, Davis KR, Ecker JR, Jones AM. The beta-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes. The Plant Cell. 15: 393-409. PMID 12566580 DOI: 10.1105/Tpc.006148 |
0.544 |
|
| 2003 |
Strand A, Asami T, Alonso J, Ecker JR, Chory J. Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinix Nature. 421: 79-83. PMID 12511958 DOI: 10.1038/Nature01204 |
0.599 |
|
| 2002 |
Zhao Y, Hull AK, Gupta NR, Goss KA, Alonso J, Ecker JR, Normanly J, Chory J, Celenza JL. Trp-dependent auxin biosynthesis in Arabidopsis: Involvement of cytochrome P450s CYP79B2 and CYP79B3 Genes and Development. 16: 3100-3112. PMID 12464638 DOI: 10.1101/Gad.1035402 |
0.636 |
|
| 2002 |
Friedrichsen DM, Nemhauser J, Muramitsu T, Maloof JN, Alonso J, Ecker JR, Furuya M, Chory J. Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth Genetics. 162: 1445-1456. PMID 12454087 |
0.634 |
|
| 2002 |
Schroeder DF, Gahrtz M, Maxwell BB, Cook RK, Kan JM, Alonso JM, Ecker JR, Chory J. De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis Current Biology. 12: 1462-1472. PMID 12225661 DOI: 10.1016/S0960-9822(02)01106-5 |
0.558 |
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| 2002 |
Hu J, Aguirre M, Peto C, Alonso J, Ecker J, Chory J. A role for peroxisomes in photomorphogenesis and development of Arabidopsis. Science (New York, N.Y.). 297: 405-9. PMID 12130786 DOI: 10.1126/Science.1073633 |
0.623 |
|
| 2002 |
Zheng H, Bednarek SY, Sanderfoot AA, Alonso J, Ecker JR, Raikhel NV. NPSN11 is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE. Plant Physiology. 129: 530-9. PMID 12068098 DOI: 10.1104/Pp.003970 |
0.57 |
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| 2001 |
Alonso JM, Ecker JR. The ethylene pathway: a paradigm for plant hormone signaling and interaction Science"S Stke [Electronic Resource] : Signal Transduction Knowledge Environment. 2001: RE1. PMID 11752640 DOI: 10.1126/Stke.2001.70.Re1 |
0.6 |
|
| 2000 |
Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, et al. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature. 408: 816-20. PMID 11130712 DOI: 10.1038/35048500 |
0.614 |
|
| 1999 |
Hirayama T, Kieber JJ, Hirayama N, Kogan M, Guzman P, Nourizadeh S, Alonso JM, Dailey WP, Dancis A, Ecker JR. RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson disease-related copper transporter, is required for ethylene signaling in Arabidopsis. Cell. 97: 383-93. PMID 10319818 DOI: 10.1016/S0092-8674(00)80747-3 |
0.715 |
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