Sallie W. Chisholm, Ph.D. - Publications

Affiliations: 
1976- Massachusetts Institute of Technology, Cambridge, MA, United States 
Website:
https://biology.mit.edu/profile/sallie-penny-w-chisholm/

151 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Capovilla G, Castro KG, Collani S, Kearney SM, Kehoe DM, Chisholm SW. Chitin degradation by Synechococcus WH7803. Scientific Reports. 13: 19944. PMID 37968300 DOI: 10.1038/s41598-023-47332-0  0.676
2023 Kujawinski EB, Braakman R, Longnecker K, Becker JW, Chisholm SW, Dooley K, Kido Soule MC, Swarr GJ, Halloran K. Metabolite diversity among representatives of divergent ecotypes. Msystems. 8: e0126122. PMID 37815355 DOI: 10.1128/msystems.01261-22  0.301
2023 Berube PM, O'Keefe TJ, Rasmussen A, LeMaster T, Chisholm SW. Production and cross-feeding of nitrite within populations. Mbio. e0123623. PMID 37404012 DOI: 10.1128/mbio.01236-23  0.739
2023 Capovilla G, Braakman R, Fournier GP, Hackl T, Schwartzman J, Lu X, Yelton A, Longnecker K, Soule MCK, Thomas E, Swarr G, Mongera A, Payette JG, Castro KG, Waldbauer JR, ... ... Chisholm SW, et al. Chitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle. Proceedings of the National Academy of Sciences of the United States of America. 120: e2213271120. PMID 37159478 DOI: 10.1073/pnas.2213271120  0.307
2023 Berta-Thompson JW, Thomas E, Cubillos-Ruiz A, Hackl T, Becker JW, Coe A, Biller SJ, Berube PM, Chisholm SW. Draft genomes of three closely related low light-adapted Prochlorococcus. Bmc Genomic Data. 24: 11. PMID 36829130 DOI: 10.1186/s12863-022-01103-4  0.763
2023 Hackl T, Laurenceau R, Ankenbrand MJ, Bliem C, Cariani Z, Thomas E, Dooley KD, Arellano AA, Hogle SL, Berube P, Leventhal GE, Luo E, Eppley JM, Zayed AA, Beaulaurier J, ... ... Chisholm SW, et al. Novel integrative elements and genomic plasticity in ocean ecosystems. Cell. 186: 47-62.e16. PMID 36608657 DOI: 10.1016/j.cell.2022.12.006  0.766
2022 Acker M, Hogle SL, Berube PM, Hackl T, Coe A, Stepanauskas R, Chisholm SW, Repeta DJ. Phosphonate production by marine microbes: Exploring new sources and potential function. Proceedings of the National Academy of Sciences of the United States of America. 119: e2113386119. PMID 35254902 DOI: 10.1073/pnas.2113386119  0.75
2022 Kearney SM, Coe A, Castro KG, Chisholm SW. Filter Plating Method for Rendering Picocyanobacteria Cultures Free of Heterotrophic Bacterial Contaminants and Clonal. Frontiers in Microbiology. 13: 821803. PMID 35250937 DOI: 10.3389/fmicb.2022.821803  0.704
2022 Hogle SL, Hackl T, Bundy RM, Park J, Satinsky B, Hiltunen T, Biller S, Berube PM, Chisholm SW. Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean. The Isme Journal. PMID 35241788 DOI: 10.1038/s41396-022-01215-w  0.733
2021 Kearney SM, Thomas E, Coe A, Chisholm SW. Microbial diversity of co-occurring heterotrophs in cultures of marine picocyanobacteria. Environmental Microbiome. 16: 1. PMID 33902739 DOI: 10.1186/s40793-020-00370-x  0.706
2020 Laurenceau R, Raho N, Forget M, Arellano AA, Chisholm SW. Frequency of mispackaging of Prochlorococcus DNA by cyanophage. The Isme Journal. PMID 32929209 DOI: 10.1038/S41396-020-00766-0  0.359
2019 Pachiadaki MG, Brown JM, Brown J, Bezuidt O, Berube PM, Biller SJ, Poulton NJ, Burkart MD, La Clair JJ, Chisholm SW, Stepanauskas R. Charting the Complexity of the Marine Microbiome through Single-Cell Genomics. Cell. 179: 1623-1635.e11. PMID 31835036 DOI: 10.1016/J.Cell.2019.11.017  0.776
2019 Biller SJ, Berube PM, Dooley K, Williams M, Satinsky BM, Hackl T, Hogle SL, Coe A, Bergauer K, Bouman HA, Browning TJ, Corte D, Hassler C, Hulston D, Jacquot JE, ... ... Chisholm SW, et al. Publisher Correction: Marine microbial metagenomes sampled across space and time. Scientific Data. 6: 47. PMID 31113983 DOI: 10.1038/S41597-019-0054-1  0.705
2019 Becker JW, Hogle SL, Rosendo K, Chisholm SW. Co-culture and biogeography of Prochlorococcus and SAR11. The Isme Journal. PMID 30742057 DOI: 10.1038/S41396-019-0365-4  0.452
2019 Berube PM, Rasmussen A, Braakman R, Stepanauskas R, Chisholm SW. Emergence of trait variability through the lens of nitrogen assimilation in . Elife. 8. PMID 30706847 DOI: 10.7554/Elife.41043  0.767
2018 Biller SJ, Berube PM, Dooley K, Williams M, Satinsky BM, Hackl T, Hogle SL, Coe A, Bergauer K, Bouman HA, Browning TJ, De Corte D, Hassler C, Hulston D, Jacquot JE, ... ... Chisholm SW, et al. Marine microbial metagenomes sampled across space and time. Scientific Data. 5: 180176. PMID 30179232 DOI: 10.1038/Sdata.2018.176  0.75
2018 Berube PM, Biller SJ, Hackl T, Hogle SL, Satinsky BM, Becker JW, Braakman R, Collins SB, Kelly L, Berta-Thompson J, Coe A, Bergauer K, Bouman HA, Browning TJ, De Corte D, ... ... Chisholm SW, et al. Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments. Scientific Data. 5: 180154. PMID 30179231 DOI: 10.1038/Sdata.2018.154  0.813
2018 Berube PM, Rasmussen A, Braakman R, Stepanauskas R, Chisholm SW. Author response: Emergence of trait variability through the lens of nitrogen assimilation in Prochlorococcus Elife. DOI: 10.7554/Elife.41043.045  0.702
2017 Cubillos-Ruiz A, Berta-Thompson JW, Becker JW, van der Donk WA, Chisholm SW. Evolutionary radiation of lanthipeptides in marine cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 28630351 DOI: 10.1073/Pnas.1700990114  0.353
2017 Read RW, Berube PM, Biller SJ, Neveux I, Cubillos-Ruiz A, Chisholm SW, Grzymski JJ. Nitrogen cost minimization is promoted by structural changes in the transcriptome of N-deprived Prochlorococcus cells. The Isme Journal. PMID 28585937 DOI: 10.1038/Ismej.2017.88  0.733
2017 Kashtan N, Roggensack SE, Berta-Thompson JW, Grinberg M, Stepanauskas R, Chisholm SW. Fundamental differences in diversity and genomic population structure between Atlantic and Pacific Prochlorococcus. The Isme Journal. PMID 28524867 DOI: 10.1038/Ismej.2017.64  0.442
2017 Braakman R, Follows MJ, Chisholm SW. Metabolic evolution and the self-organization of ecosystems. Proceedings of the National Academy of Sciences of the United States of America. PMID 28348231 DOI: 10.1073/Pnas.1619573114  0.365
2017 Murata K, Zhang Q, Gerardo Galaz-Montoya J, Fu C, Coleman ML, Osburne MS, Schmid MF, Sullivan MB, Chisholm SW, Chiu W. Visualizing Adsorption of Cyanophage P-SSP7 onto Marine Prochlorococcus. Scientific Reports. 7: 44176. PMID 28281671 DOI: 10.1038/Srep44176  0.692
2016 Cermak N, Becker JW, Knudsen SM, Chisholm SW, Manalis SR, Polz MF. Direct single-cell biomass estimates for marine bacteria via Archimedes' principle. The Isme Journal. PMID 27922599 DOI: 10.1038/Ismej.2016.161  0.343
2016 Thompson LR, Zeng Q, Chisholm SW. Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage. Plos One. 11: e0165375. PMID 27788196 DOI: 10.1371/Journal.Pone.0165375  0.352
2016 Biller SJ, Coe A, Chisholm SW. Torn apart and reunited: impact of a heterotroph on the transcriptome of Prochlorococcus. The Isme Journal. PMID 27258949 DOI: 10.1038/Ismej.2016.82  0.35
2016 Yelton AP, Acinas SG, Sunagawa S, Bork P, Pedrós-Alió C, Chisholm SW. Global genetic capacity for mixotrophy in marine picocyanobacteria. The Isme Journal. PMID 27137127 DOI: 10.1038/Ismej.2016.64  0.422
2015 Lea-Smith DJ, Biller SJ, Davey MP, Cotton CA, Perez Sepulveda BM, Turchyn AV, Scanlan DJ, Smith AG, Chisholm SW, Howe CJ. Contribution of cyanobacterial alkane production to the ocean hydrocarbon cycle. Proceedings of the National Academy of Sciences of the United States of America. PMID 26438854 DOI: 10.1073/Pnas.1507274112  0.35
2015 Biller SJ, Coe A, Martin-Cuadrado AB, Chisholm SW. Draft Genome Sequence of Alteromonas macleodii Strain MIT1002, Isolated from an Enrichment Culture of the Marine Cyanobacterium Prochlorococcus. Genome Announcements. 3. PMID 26316635 DOI: 10.1128/Genomea.00967-15  0.408
2015 Biller SJ, Berube PM, Lindell D, Chisholm SW. Prochlorococcus: the structure and function of collective diversity. Nature Reviews. Microbiology. 13: 13-27. PMID 25435307 DOI: 10.1038/Nrmicro3378  0.771
2015 Berube PM, Biller SJ, Kent AG, Berta-Thompson JW, Roggensack SE, Roache-Johnson KH, Ackerman M, Moore LR, Meisel JD, Sher D, Thompson LR, Campbell L, Martiny AC, Chisholm SW. Physiology and evolution of nitrate acquisition in Prochlorococcus. The Isme Journal. 9: 1195-207. PMID 25350156 DOI: 10.1038/Ismej.2014.211  0.783
2015 Berube PM, Coe A, Roggensack SE, Chisholm SW. Temporal dynamics of Prochlorococcus cells with the potential for nitrate assimilation in the subtropical Atlantic and Pacific oceans Limnology and Oceanography. DOI: 10.1002/Lno.10226  0.771
2014 Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Rocap G, Moore LR, Chisholm SW. Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Scientific Data. 1: 140034. PMID 25977791 DOI: 10.1038/Sdata.2014.34  0.812
2014 Kashtan N, Roggensack SE, Rodrigue S, Thompson JW, Biller SJ, Coe A, Ding H, Marttinen P, Malmstrom RR, Stocker R, Follows MJ, Stepanauskas R, Chisholm SW. Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science (New York, N.Y.). 344: 416-20. PMID 24763590 DOI: 10.1126/Science.1248575  0.456
2014 Becker JW, Berube PM, Follett CL, Waterbury JB, Chisholm SW, Delong EF, Repeta DJ. Closely related phytoplankton species produce similar suites of dissolved organic matter. Frontiers in Microbiology. 5: 111. PMID 24748874 DOI: 10.3389/Fmicb.2014.00111  0.749
2014 Biller SJ, Schubotz F, Roggensack SE, Thompson AW, Summons RE, Chisholm SW. Bacterial vesicles in marine ecosystems. Science (New York, N.Y.). 343: 183-6. PMID 24408433 DOI: 10.1126/Science.1243457  0.342
2014 Wood M, Vaulot D, Palenik B, Chisholm SW, Lewis M, Parsons TR. John Martin Award “Autotrophic Picoplankton in the Tropical Ocean” Limnology and Oceanography Bulletin. 23: 49-49. DOI: 10.1002/Lob.201423249  0.53
2013 Kelly L, Ding H, Huang KH, Osburne MS, Chisholm SW. Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent. The Isme Journal. 7: 1827-41. PMID 23657361 DOI: 10.1038/Ismej.2013.58  0.717
2013 Labrie SJ, Frois-Moniz K, Osburne MS, Kelly L, Roggensack SE, Sullivan MB, Gearin G, Zeng Q, Fitzgerald M, Henn MR, Chisholm SW. Genomes of marine cyanopodoviruses reveal multiple origins of diversity. Environmental Microbiology. 15: 1356-76. PMID 23320838 DOI: 10.1111/1462-2920.12053  0.728
2013 Malmstrom RR, Rodrigue S, Huang KH, Kelly L, Kern SE, Thompson A, Roggensack S, Berube PM, Henn MR, Chisholm SW. Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. The Isme Journal. 7: 184-98. PMID 22895163 DOI: 10.1038/Ismej.2012.89  0.815
2012 Waldbauer JR, Rodrigue S, Coleman ML, Chisholm SW. Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. Plos One. 7: e43432. PMID 22952681 DOI: 10.1371/Journal.Pone.0043432  0.714
2012 Zeng Q, Chisholm SW. Marine viruses exploit their host's two-component regulatory system in response to resource limitation. Current Biology : Cb. 22: 124-8. PMID 22244998 DOI: 10.1016/J.Cub.2011.11.055  0.385
2012 Kelly L, Huang KH, Ding H, Chisholm SW. ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage. Nucleic Acids Research. 40: D632-40. PMID 22102570 DOI: 10.1093/Nar/Gkr1022  0.729
2012 Martínez A, Osburne MS, Sharma AK, DeLong EF, Chisholm SW. Phosphite utilization by the marine picocyanobacterium Prochlorococcus MIT9301. Environmental Microbiology. 14: 1363-77. PMID 22004069 DOI: 10.1111/J.1462-2920.2011.02612.X  0.357
2011 Osburne MS, Holmbeck BM, Coe A, Chisholm SW. The spontaneous mutation frequencies of Prochlorococcus strains are commensurate with those of other bacteria. Environmental Microbiology Reports. 3: 744-9. PMID 23761365 DOI: 10.1111/J.1758-2229.2011.00293.X  0.337
2011 Thompson LR, Zeng Q, Kelly L, Huang KH, Singer AU, Stubbe J, Chisholm SW. Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism. Proceedings of the National Academy of Sciences of the United States of America. 108: E757-64. PMID 21844365 DOI: 10.1073/Pnas.1102164108  0.701
2011 Thompson AW, Huang K, Saito MA, Chisholm SW. Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability. The Isme Journal. 5: 1580-94. PMID 21562599 DOI: 10.1038/Ismej.2011.49  0.343
2011 Sher D, Thompson JW, Kashtan N, Croal L, Chisholm SW. Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria. The Isme Journal. 5: 1125-32. PMID 21326334 DOI: 10.1038/Ismej.2011.1  0.355
2011 Sullivan MB, Coleman ML, Quinlivan V, Rosenkrantz JE, Defrancesco AS, Tan G, Fu R, Lee JA, Waterbury JB, Bielawski JP, Chisholm SW. Portal protein diversity and phage ecology Environmental Microbiology. 13: 2832. DOI: 10.1111/J.1462-2920.2011.02616.X  0.678
2011 Coleman ML, Chisholm SW. Reply to Luo and Konstantinidis: Phosphorus-related genes are enriched in Prochlorococcus populations from the North Atlantic Proceedings of the National Academy of Sciences of the United States of America. 108: E64-E66. DOI: 10.1073/Pnas.1102448108  0.709
2010 Coleman ML, Chisholm SW. Ecosystem-specific selection pressures revealed through comparative population genomics. Proceedings of the National Academy of Sciences of the United States of America. 107: 18634-9. PMID 20937887 DOI: 10.1073/Pnas.1009480107  0.729
2010 McCarren J, Becker JW, Repeta DJ, Shi Y, Young CR, Malmstrom RR, Chisholm SW, DeLong EF. Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea. Proceedings of the National Academy of Sciences of the United States of America. 107: 16420-7. PMID 20807744 DOI: 10.1073/Pnas.1010732107  0.396
2010 Rodrigue S, Materna AC, Timberlake SC, Blackburn MC, Malmstrom RR, Alm EJ, Chisholm SW. Unlocking short read sequencing for metagenomics. Plos One. 5: e11840. PMID 20676378 DOI: 10.1371/Journal.Pone.0011840  0.54
2010 Sullivan MB, Huang KH, Ignacio-Espinoza JC, Berlin AM, Kelly L, Weigele PR, DeFrancesco AS, Kern SE, Thompson LR, Young S, Yandava C, Fu R, Krastins B, Chase M, Sarracino D, ... ... Chisholm SW, et al. Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environmental Microbiology. 12: 3035-56. PMID 20662890 DOI: 10.1111/J.1462-2920.2010.02280.X  0.726
2010 Steglich C, Lindell D, Futschik M, Rector T, Steen R, Chisholm SW. Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus. Genome Biology. 11: R54. PMID 20482874 DOI: 10.1186/Gb-2010-11-5-R54  0.348
2010 Li B, Sher D, Kelly L, Shi Y, Huang K, Knerr PJ, Joewono I, Rusch D, Chisholm SW, van der Donk WA. Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 107: 10430-5. PMID 20479271 DOI: 10.1073/Pnas.0913677107  0.688
2010 Malmstrom RR, Coe A, Kettler GC, Martiny AC, Frias-Lopez J, Zinser ER, Chisholm SW. Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. The Isme Journal. 4: 1252-64. PMID 20463762 DOI: 10.1038/Ismej.2010.60  0.64
2010 Osburne MS, Holmbeck BM, Frias-Lopez J, Steen R, Huang K, Kelly L, Coe A, Waraska K, Gagne A, Chisholm SW. UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase. Environmental Microbiology. 12: 1978-88. PMID 20345942 DOI: 10.1111/J.1462-2920.2010.02203.X  0.655
2010 Bragg JG, Dutkiewicz S, Jahn O, Follows MJ, Chisholm SW. Modeling selective pressures on phytoplankton in the global ocean. Plos One. 5: e9569. PMID 20224766 DOI: 10.1371/Journal.Pone.0009569  0.366
2010 Henn MR, Sullivan MB, Stange-Thomann N, Osburne MS, Berlin AM, Kelly L, Yandava C, Kodira C, Zeng Q, Weiand M, Sparrow T, Saif S, Giannoukos G, Young SK, Nusbaum C, ... ... Chisholm SW, et al. Analysis of high-throughput sequencing and annotation strategies for phage genomes. Plos One. 5: e9083. PMID 20140207 DOI: 10.1371/Journal.Pone.0009083  0.698
2009 Sullivan MB, Krastins B, Hughes JL, Kelly L, Chase M, Sarracino D, Chisholm SW. The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'. Environmental Microbiology. 11: 2935-51. PMID 19840100 DOI: 10.1111/J.1462-2920.2009.02081.X  0.721
2009 Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW. Whole genome amplification and de novo assembly of single bacterial cells. Plos One. 4: e6864. PMID 19724646 DOI: 10.1371/Journal.Pone.0006864  0.396
2009 Zinser ER, Lindell D, Johnson ZI, Futschik ME, Steglich C, Coleman ML, Wright MA, Rector T, Steen R, McNulty N, Thompson LR, Chisholm SW. Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus. Plos One. 4: e5135. PMID 19352512 DOI: 10.1371/Journal.Pone.0005135  0.794
2009 Klein MG, Zwart P, Bagby SC, Cai F, Chisholm SW, Heinhorst S, Cannon GC, Kerfeld CA. Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport. Journal of Molecular Biology. 392: 319-33. PMID 19328811 DOI: 10.1016/J.Jmb.2009.03.056  0.305
2009 Frias-Lopez J, Thompson A, Waldbauer J, Chisholm SW. Use of stable isotope-labelled cells to identify active grazers of picocyanobacteria in ocean surface waters. Environmental Microbiology. 11: 512-25. PMID 19196281 DOI: 10.1111/J.1462-2920.2008.01793.X  0.358
2009 Martiny AC, Tai AP, Veneziano D, Primeau F, Chisholm SW. Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus. Environmental Microbiology. 11: 823-32. PMID 19021692 DOI: 10.1111/J.1462-2920.2008.01803.X  0.357
2008 Bragg JG, Chisholm SW. Modeling the fitness consequences of a cyanophage-encoded photosynthesis gene. Plos One. 3: e3550. PMID 18958282 DOI: 10.1371/Journal.Pone.0003550  0.41
2008 Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, Hess WR. The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus. Plos Genetics. 4: e1000173. PMID 18769676 DOI: 10.1371/Journal.Pgen.1000173  0.41
2008 Sullivan MB, Coleman ML, Quinlivan V, Rosenkrantz JE, Defrancesco AS, Tan G, Fu R, Lee JA, Waterbury JB, Bielawski JP, Chisholm SW. Portal protein diversity and phage ecology. Environmental Microbiology. 10: 2810-23. PMID 18673386 DOI: 10.1111/J.1462-2920.2008.01702.X  0.706
2008 Dammeyer T, Bagby SC, Sullivan MB, Chisholm SW, Frankenberg-Dinkel N. Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria. Current Biology : Cb. 18: 442-8. PMID 18356052 DOI: 10.1016/J.Cub.2008.02.067  0.391
2008 Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW, Delong EF. Microbial community gene expression in ocean surface waters. Proceedings of the National Academy of Sciences of the United States of America. 105: 3805-10. PMID 18316740 DOI: 10.1073/Pnas.0708897105  0.73
2008 Shifrin NS, Chisholm SW. PHYTOPLANKTON LIPIDS: INTERSPECIFIC DIFFERENCES AND EFFECTS OF NITRATE, SILICATE AND LIGHT-DARK CYCLES1 Journal of Phycology. 17: 374-384. DOI: 10.1111/J.1529-8817.1981.Tb00865.X  0.318
2007 Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J, Steglich C, Church GM, Richardson P, Chisholm SW. Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. Plos Genetics. 3: e231. PMID 18159947 DOI: 10.1371/Journal.Pgen.0030231  0.759
2007 Lindell D, Jaffe JD, Coleman ML, Futschik ME, Axmann IM, Rector T, Kettler G, Sullivan MB, Steen R, Hess WR, Church GM, Chisholm SW. Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature. 449: 83-6. PMID 17805294 DOI: 10.1038/Nature06130  0.74
2007 Coleman ML, Chisholm SW. Code and context: Prochlorococcus as a model for cross-scale biology. Trends in Microbiology. 15: 398-407. PMID 17693088 DOI: 10.1016/J.Tim.2007.07.001  0.696
2007 Follows MJ, Dutkiewicz S, Grant S, Chisholm SW. Emergent biogeography of microbial communities in a model ocean. Science (New York, N.Y.). 315: 1843-6. PMID 17395828 DOI: 10.1126/Science.1138544  0.317
2007 Moore LR, Coe A, Zinser ER, Saito MA, Sullivan MB, Lindell D, Frois-Moniz K, Waterbury J, Chisholm SW. Culturing the marine cyanobacterium Prochlorococcus Limnology and Oceanography: Methods. 5: 353-362. DOI: 10.4319/Lom.2007.5.353  0.655
2007 Zinser ER, Johnson ZI, Coe A, Karaca E, Veneziano D, Chisholm SW. Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean Limnology and Oceanography. 52: 2205-2220. DOI: 10.4319/Lo.2007.52.5.2205  0.659
2006 Tolonen AC, Aach J, Lindell D, Johnson ZI, Rector T, Steen R, Church GM, Chisholm SW. Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability. Molecular Systems Biology. 2: 53. PMID 17016519 DOI: 10.1038/Msb4100087  0.339
2006 Steglich C, Futschik M, Rector T, Steen R, Chisholm SW. Genome-wide analysis of light sensing in Prochlorococcus. Journal of Bacteriology. 188: 7796-806. PMID 16980454 DOI: 10.1128/Jb.01097-06  0.375
2006 Martiny AC, Coleman ML, Chisholm SW. Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proceedings of the National Academy of Sciences of the United States of America. 103: 12552-7. PMID 16895994 DOI: 10.1073/Pnas.0601301103  0.737
2006 Sullivan MB, Lindell D, Lee JA, Thompson LR, Bielawski JP, Chisholm SW. Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. Plos Biology. 4: e234. PMID 16802857 DOI: 10.1371/Journal.Pbio.0040234  0.424
2006 Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM. Sequencing genomes from single cells by polymerase cloning. Nature Biotechnology. 24: 680-6. PMID 16732271 DOI: 10.1038/Nbt1214  0.376
2006 Coleman ML, Sullivan MB, Martiny AC, Steglich C, Barry K, Delong EF, Chisholm SW. Genomic islands and the ecology and evolution of Prochlorococcus. Science (New York, N.Y.). 311: 1768-70. PMID 16556843 DOI: 10.1126/Science.1122050  0.763
2006 Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EM, Chisholm SW. Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. Science (New York, N.Y.). 311: 1737-40. PMID 16556835 DOI: 10.1126/Science.1118052  0.652
2006 Ahlgren NA, Rocap G, Chisholm SW. Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies. Environmental Microbiology. 8: 441-54. PMID 16478451 DOI: 10.1111/J.1462-2920.2005.00910.X  0.355
2006 DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU, Martinez A, Sullivan MB, Edwards R, Brito BR, Chisholm SW, Karl DM. Community genomics among stratified microbial assemblages in the ocean's interior. Science (New York, N.Y.). 311: 496-503. PMID 16439655 DOI: 10.1126/Science.1120250  0.417
2006 Zinser ER, Coe A, Johnson ZI, Martiny AC, Fuller NJ, Scanlan DJ, Chisholm SW. Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. Applied and Environmental Microbiology. 72: 723-32. PMID 16391112 DOI: 10.1128/Aem.72.1.723-732.2006  0.649
2005 Lindell D, Jaffe JD, Johnson ZI, Church GM, Chisholm SW. Photosynthesis genes in marine viruses yield proteins during host infection. Nature. 438: 86-9. PMID 16222247 DOI: 10.1038/Nature04111  0.372
2005 Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. Plos Biology. 3: e144. PMID 15828858 DOI: 10.1371/Journal.Pbio.0030144  0.746
2004 Johnson ZI, Chisholm SW. Properties of overlapping genes are conserved across microbial genomes. Genome Research. 14: 2268-72. PMID 15520290 DOI: 10.1101/Gr.2433104  0.414
2004 Lindell D, Sullivan MB, Johnson ZI, Tolonen AC, Rohwer F, Chisholm SW. Transfer of photosynthesis genes to and from Prochlorococcus viruses. Proceedings of the National Academy of Sciences of the United States of America. 101: 11013-8. PMID 15256601 DOI: 10.1073/Pnas.0401526101  0.389
2004 Vaulot D, Chisholm SW. FLOW CYTOMETRIC ANALYSIS OF SPERMATOGENESIS IN THE DIATOM THALASSIOSIRA WEISSFLOGII (BACILLARIOPHYCEAE)1 Journal of Phycology. 23: 132-137. DOI: 10.1111/J.0022-3646.1987.00132.X  0.585
2003 Sullivan MB, Waterbury JB, Chisholm SW. Cyanophages infecting the oceanic cyanobacterium Prochlorococcus. Nature. 424: 1047-51. PMID 12944965 DOI: 10.1038/Nature01929  0.394
2003 Rocap G, Larimer FW, Lamerdin J, Malfatti S, Chain P, Ahlgren NA, Arellano A, Coleman M, Hauser L, Hess WR, Johnson ZI, Land M, Lindell D, Post AF, Regala W, ... ... Chisholm SW, et al. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature. 424: 1042-7. PMID 12917642 DOI: 10.1038/Nature01947  0.815
2003 Bertilsson S, Berglund O, Karl DM, Chisholm SW. Elemental composition of marine Prochlorococcus and Synechococcus: Implications for the ecological stoichiometry of the sea Limnology and Oceanography. 48: 1721-1731. DOI: 10.4319/Lo.2003.48.5.1721  0.301
2003 Shaw SL, Chisholm SW, Prinn RG. Isoprene production by Prochlorococcus, a marine cyanobacterium, and other phytoplankton Marine Chemistry. 80: 227-245. DOI: 10.1016/S0304-4203(02)00101-9  0.362
2002 Rocap G, Distel DL, Waterbury JB, Chisholm SW. Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Applied and Environmental Microbiology. 68: 1180-91. PMID 11872466 DOI: 10.1128/Aem.68.3.1180-1191.2002  0.403
2002 Ting CS, Rocap G, King J, Chisholm SW. Cyanobacterial photosynthesis in the oceans: the origins and significance of divergent light-harvesting strategies. Trends in Microbiology. 10: 134-42. PMID 11864823 DOI: 10.1016/S0966-842X(02)02319-3  0.349
2002 Saito MA, Moffett JW, Chisholm SW, Waterbury JB. Cobalt limitation and uptake in Prochlorococcus Limnology and Oceanography. 47: 1629-1636. DOI: 10.4319/Lo.2002.47.6.1629  0.364
2002 Moore LR, Post AF, Rocap G, Chisholm SW. Utilization of different nitrogen sources by the marine cyanobacteria Prochlorococcus and Synechococcus Limnology and Oceanography. 47: 989-996. DOI: 10.4319/Lo.2002.47.4.0989  0.414
2001 Hess WR, Rocap G, Ting CS, Larimer F, Stilwagen S, Lamerdin J, Chisholm SW. The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics. Photosynthesis Research. 70: 53-71. PMID 16228362 DOI: 10.1023/A:1013835924610  0.434
2001 Ting CS, Rocap G, King J, Chisholm SW. Phycobiliprotein genes of the marine photosynthetic prokaryote Prochlorococcus: evidence for rapid evolution of genetic heterogeneity. Microbiology (Reading, England). 147: 3171-82. PMID 11700369 DOI: 10.1099/00221287-147-11-3171  0.428
2001 Chisholm SW, Falkowski PG, Cullen JJ. Oceans. Dis-crediting ocean fertilization. Science (New York, N.Y.). 294: 309-10. PMID 11598285 DOI: 10.1126/Science.1065349  0.303
2001 Cavender-Bares KK, Rinaldo A, Chisholm SW. Microbial size spectra from natural and nutrient enriched ecosystems Limnology and Oceanography. 46: 778-789. DOI: 10.4319/Lo.2001.46.4.0778  0.309
2001 Durand MD, Olson RJ, Chisholm SW. Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea Deep-Sea Research Part Ii: Topical Studies in Oceanography. 48: 1983-2003. DOI: 10.1016/S0967-0645(00)00166-1  0.356
2000 Worden AZ, Chisholm SW, Binder BJ. In situ hybridization of Prochlorococcus and Synechococcus (marine cyanobacteria) spp. with RRNA-targeted peptide nucleic acid probes. Applied and Environmental Microbiology. 66: 284-9. PMID 10618237 DOI: 10.1128/Aem.66.1.284-289.2000  0.308
1999 Moore LR, Chisholm SW. Photophysiology of the marine cyanobacterium Prochlorococcus: Ecotypic differences among cultured isolates Limnology and Oceanography. 44: 628-638. DOI: 10.4319/Lo.1999.44.3.0628  0.312
1999 Olson RJ, Chisholm SW. Frequency distributions of phytoplankton single-cell fluorescence and vertical mixing in the surface ocean Limnology and Oceanography. 44: 431-435. DOI: 10.4319/Lo.1999.44.2.0431  0.313
1999 Cavender-Bares KK, Mann EL, Chisholm SW, Ondrusek ME, Bidigare RR. Differential response of equatorial Pacific phytoplankton to iron fertilization Limnology and Oceanography. 44: 237-246. DOI: 10.4319/Lo.1999.44.2.0237  0.332
1998 Moore LR, Rocap G, Chisholm SW. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature. 393: 464-7. PMID 9624000 DOI: 10.1038/30965  0.372
1998 Urbach E, Scanlan DJ, Distel DL, Waterbury JB, Chisholm SW. Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacteria). Journal of Molecular Evolution. 46: 188-201. PMID 9452521 DOI: 10.1007/Pl00006294  0.383
1998 Urbach E, Chisholm SW. Genetic diversity in Prochlorococcus populations flow cytometrically sorted from the Sargasso Sea and Gulf Stream Limnology and Oceanography. 43: 1615-1630. DOI: 10.4319/Lo.1998.43.7.1615  0.365
1996 Binder BJ, Chisholm SW, Olson RJ, Frankel SL, Worden AZ. Dynamics of picophytoplankton, ultraphytoplankton and bacteria in the central equatorial Pacific Deep-Sea Research Part Ii: Topical Studies in Oceanography. 43: 907-931. DOI: 10.1016/0967-0645(96)00023-9  0.379
1995 Vaulot D, Marie D, Olson RJ, Chisholm SW. Growth of prochlorococcus, a photosynthetic prokaryote, in the equatorial pacific ocean. Science (New York, N.Y.). 268: 1480-2. PMID 17843668 DOI: 10.1126/Science.268.5216.1480  0.606
1995 Binder BJ, Chisholm SW. Cell Cycle Regulation in Marine Synechococcus sp. Strains. Applied and Environmental Microbiology. 61: 708-17. PMID 16534938 DOI: 10.1128/Aem.61.2.708-717.1995  0.371
1995 Chisholm SW. The iron hypothesis: Basic research meets environmental policy Reviews of Geophysics. 33: 1277-1286. DOI: 10.1029/95Rg00743  0.318
1993 Bowen JD, Stolzenbach KD, Chisholm SW. Simulating bacterial clustering around phytoplankton cells in a turbulent ocean Limnology & Oceanography. 38: 36-51. DOI: 10.4319/Lo.1993.38.1.0036  0.313
1992 Urbach E, Robertson DL, Chisholm SW. Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation. Nature. 355: 267-70. PMID 1731225 DOI: 10.1038/355267A0  0.38
1992 Armbrust EV, Chisholm SW. PATTERNS OF CELL SIZE CHANGE IN A MARINE CENTRIC DIATOM: VARIABILITY EVOLVING FROM CLONAL ISOLATES1 Journal of Phycology. 28: 146-156. DOI: 10.1111/J.0022-3646.1992.00146.X  0.341
1992 Chisholm SW, Frankel SL, Goericke R, Olson RJ, Palenik B, Waterbury JB, West-Johnsrud L, Zettler ER. Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b Archives of Microbiology. 157: 297-300. DOI: 10.1007/Bf00245165  0.367
1990 Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R, Stahl DA. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Applied and Environmental Microbiology. 56: 1919-25. PMID 2200342 DOI: 10.1128/Aem.56.6.1919-1925.1990  0.497
1990 Binder BJ, Chisholm SW. Relationship between DNA cycle and growth rate in Synechococcus sp. strain PCC 6301. Journal of Bacteriology. 172: 2313-9. PMID 2110139 DOI: 10.1128/Jb.172.5.2313-2319.1990  0.326
1990 Olson RJ, Chisholm SW, Zettler ER, Armbrust EV. Pigments, size, and distribution of Synechococcus in the North Atlantic and Pacific Oceans Limnology & Oceanography. 35: 45-58. DOI: 10.4319/Lo.1990.35.1.0045  0.342
1990 Armbrust EV, Chisholm SW, Olson RJ. ROLE OF LIGHT AND THE CELL CYCLE ON THE INDUCTION OF SPERMATOGENESIS IN A CENTRIC DIATOM1 Journal of Phycology. 26: 470-478. DOI: 10.1111/J.0022-3646.1990.00470.X  0.353
1989 Gerath MW, Chisholm SW. Change in Photosynthetic Capacity over the Cell Cycle in Light/Dark-Synchronized Amphidinium carteri Is Due Solely to the Photocycle. Plant Physiology. 91: 999-1005. PMID 16667167 DOI: 10.1104/Pp.91.3.999  0.333
1989 Armbrust EV, Bowen JD, Olson RJ, Chisholm SW. Effect of light on the cell cycle of a marine synechococcus strain. Applied and Environmental Microbiology. 55: 425-32. PMID 16347850 DOI: 10.1128/Aem.55.2.425-432.1989  0.357
1989 Sosik HM, Chisholm SW, Olson RJ. Chlorophyll fluorescence from single cells: Interpretation of flow cytometric signals Limnology and Oceanography. 34: 1749-1761. DOI: 10.4319/Lo.1989.34.8.1749  0.309
1988 Chisholm SW, Olson RJ, Zettler ER, Goericke R, Waterbury JB, Welschmeyer NA. A novel free-living prochlorophyte abundant in the oceanic euphotic zone Nature. 334: 340-343. DOI: 10.1038/334340A0  0.343
1988 Cowles TJ, Olson RJ, Chisholm SW. Food selection by copepods: discrimination on the basis of food quality Marine Biology. 100: 41-49. DOI: 10.1007/Bf00392953  0.313
1987 Vaulot D, Chisholm SW. A simple model of the growth of phytoplankton populations in light/dark cycles Journal of Plankton Research. 9: 345-366. DOI: 10.1093/Plankt/9.2.345  0.581
1987 Vaulot D, Olson RJ, Merkel S, Chisholm SW. Cell-cycle response to nutrient starvation in two phytoplankton species, Thalassiosira weissflogii and Hymenomonas carterae Marine Biology. 95: 625-630. DOI: 10.1007/Bf00393106  0.601
1986 Olson RJ, Vaulot D, Chisholm SW. Effects of environmental stresses on the cell cycle of two marine phytoplankton species. Plant Physiology. 80: 918-25. PMID 16664742 DOI: 10.1104/Pp.80.4.918  0.599
1986 Vaulot D, Olson RJ, Chisholm SW. Light and dark control of the cell cycle in two marine phytoplankton species. Experimental Cell Research. 167: 38-52. PMID 3758209 DOI: 10.1016/0014-4827(86)90202-8  0.59
1986 Olson RJ, Watras C, Chisholm SW. Patterns of individual cell growth in marine centric diatoms Journal of General Microbiology. 132: 1197-1204. DOI: 10.1099/00221287-132-5-1197  0.358
1986 Olson RJ, Chisholm SW. Effects of light and nitrogen limitation on the cell cycle of the dinoflagellate Amphidinium carteri Journal of Plankton Research. 8: 785-793. DOI: 10.1093/Plankt/8.4.785  0.336
1985 Olson RJ, Vaulot D, Chisholm SW. Marine phytoplankton distributions measured using shipboard flow cytometry Deep Sea Research Part a, Oceanographic Research Papers. 32: 1273-1280. DOI: 10.1016/0198-0149(85)90009-3  0.477
1983 Wheeler PA, Olson RJ, Chisholm SW. EFFECTS OF PHOTOCYCLES AND PERIODIC AMMONIUM SUPPLY ON THREE MARINE PHYTOPLANKTON SPECIES. II. AMMONIUM UPTAKE AND ASSIMILATION Journal of Phycology. 19: 528-533. DOI: 10.1111/J.0022-3646.1983.00528.X  0.319
1983 OlsonM RJ, Chisholm SW. EFFECTS OF PHOTOCYCLES AND PERIODIC AMMONIUM SUPPLY ON THREE MARINE PHYTOPLANKTON SPECIES. I. CELL DIVISION PATTERNS1 Journal of Phycology. 19: 522-528. DOI: 10.1111/J.0022-3646.1983.00522.X  0.328
1983 Anderson DM, Chisholm SW, Watras CJ. Importance of life cycle events in the population dynamics of Gonyaulax tamarensis Marine Biology. 76: 179-189. DOI: 10.1007/Bf00392734  0.301
1982 McDuff RE, Chisholm SW. The calculation of in situ growth rates of phytoplankton populations from fractions of cells undergoing mitosis: A clarification1 Limnology and Oceanography. 27: 783-788. DOI: 10.4319/Lo.1982.27.4.0783  0.316
1982 Watras CJ, Chisholm SW, Anderson DM. Regulation of growth in an estuarine clone of Gonyaulax tam arensis Lebour: Salinity-dependent temperature responses Journal of Experimental Marine Biology and Ecology. 62: 25-37. DOI: 10.1016/0022-0981(82)90214-3  0.323
1981 Chisholm SW, Brand LE. Persistence of cell division phasing in marine phytoplankton in continuous light after entrainment to light: Dark cycles Journal of Experimental Marine Biology and Ecology. 51: 107-118. DOI: 10.1016/0022-0981(81)90123-4  0.346
1980 Chisholm SW, Costello JC. INFLUENCE OF ENVIRONMENTAL FACTORS AND POPULATION COMPOSITION ON THE TIMING OF CELL DIVISION IN THALASSIOSIRA FLUVIATILIS (BACILLARIOPHYCEAE) GROWN ON LIGHT/DARK CYCLES Journal of Phycology. 16: 375-383. DOI: 10.1111/J.1529-8817.1980.Tb03048.X  0.352
1979 Stross RG, Nobbs PA, Chisholm SW. SUNDAY, A Simulation Model of an Arctic Daphnia Population Oikos. 32: 349. DOI: 10.2307/3544745  0.729
1978 Chisholm SW, Azam F, Eppley RW. Silicic acid incorporation in marine diatoms on light:dark cycles: Use as an assay for phased cell division 1 Limnology and Oceanography. 23: 518-529. DOI: 10.4319/Lo.1978.23.3.0518  0.305
1976 Chisholm SW, Stross RG. PHOSPHATE UPTAKE KINETICS IN EUGLENA GRACILIS (Z) (EUGLENOPHYCEAE) GROWN IN LIGHT/DARK CYCLES. II. PHASED PO4-LIMITED CULTURES Journal of Phycology. 12: 217-222. DOI: 10.1111/J.1529-8817.1976.Tb00505.X  0.746
1976 Chisholm SW, Stross RG. PHOSPHATE UPTAKE KINETICS IN EUGLENA GRACILIS (Z) (EUGLENOPHYCEAE) GROWN ON LIGHT/DARK CYCLES.' I. SYNCHRONIZED BATCH CULTURES Journal of Phycology. 12: 210-217. DOI: 10.1111/J.1529-8817.1976.Tb00504.X  0.742
1975 Chisholm SW, Stross RG, Nobbs PA. Environmental and Intrinsic Control of Filtering and Feeding Rates in Arctic Daphnia Journal of the Fisheries Research Board of Canada. 32: 219-226. DOI: 10.1139/F75-018  0.713
1975 Chisholm SW, Stross RG, Nobbs PA. LIGHT/DARK-PHASED CELL DIVISION IN EUGLENA GRACZLIS (Z) (EUGLENOPHYCEAE) IN PO4-LIMITED CONTINUOUS CULTURE Journal of Phycology. 11: 367-373. DOI: 10.1111/J.1529-8817.1975.Tb02798.X  0.753
1973 Stross RG, Chisholm SW, Downing TA. Causes of daily rhythms in photosynthetic rates of phytoplankton Biol.Bull.. 145: 200-209. DOI: 10.2307/1540359  0.735
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