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Rui-ming Xu, Ph.D - Publications

Affiliations: 
2009- Institute of Biophysics Chinese Academy of Sciences (CAS) 
Area:
Epigenetic control gene expression
Website:
http://www.ibp.cas.cn/xurmlab/
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Li Z, Hua X, Serra-Cardona A, Xu X, Gan S, Zhou H, Yang WS, Chen CL, Xu RM, Zhang Z. DNA polymerase α interacts with H3-H4 and facilitates the transfer of parental histones to lagging strands. Science Advances. 6: eabb5820. PMID 32923642 DOI: 10.1126/Sciadv.Abb5820  0.351
2020 Gou LT, Lim DH, Ma W, Aubol BE, Hao Y, Wang X, Zhao J, Liang Z, Shao C, Zhang X, Meng F, Li H, Zhang X, Xu R, Li D, et al. Initiation of Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine Phosphorylation. Cell. PMID 32169215 DOI: 10.1016/J.Cell.2020.02.020  0.319
2019 Song X, Yang L, Wang M, Gu Y, Ye B, Fan Z, Xu RM, Yang N. A higher-order configuration of the heterodimeric DOT1L-AF10 coiled-coil domains potentiates their leukemogenenic activity. Proceedings of the National Academy of Sciences of the United States of America. PMID 31527241 DOI: 10.1073/Pnas.1904672116  0.395
2019 Du W, Dong Q, Zhang Z, Liu B, Zhou T, Xu RM, Wang H, Zhu B, Li Y. Stella protein facilitates DNA demethylation by disrupting the chromatin association of the RING finger-type E3 ubiquitin ligase UHRF1. The Journal of Biological Chemistry. PMID 31018966 DOI: 10.1074/Jbc.Ra119.008008  0.421
2019 Hou P, Huang C, Liu CP, Yang N, Yu T, Yin Y, Zhu B, Xu RM. Structural Insights into Stimulation of Ash1L's H3K36 Methyltransferase Activity through Mrg15 Binding. Structure (London, England : 1993). PMID 30827843 DOI: 10.1016/J.Str.2019.01.015  0.474
2018 Xiong C, Wen Z, Yu J, Chen J, Liu CP, Zhang X, Chen P, Xu RM, Li G. UBN1/2 of HIRA complex is responsible for recognition and deposition of H3.3 at cis-regulatory elements of genes in mouse ES cells. Bmc Biology. 16: 110. PMID 30285846 DOI: 10.1186/S12915-018-0573-9  0.324
2018 Zhang L, Serra-Cardona A, Zhou H, Wang M, Yang N, Zhang Z, Xu RM. Multisite Substrate Recognition in Asf1-Dependent Acetylation of Histone H3 K56 by Rtt109. Cell. PMID 30057113 DOI: 10.1016/J.Cell.2018.07.005  0.401
2016 Jin W, Wang Y, Liu CP, Yang N, Jin M, Cong Y, Wang M, Xu RM. Structural basis for snRNA recognition by the double-WD40 repeat domain of Gemin5. Genes & Development. 30: 2391-2403. PMID 27881601 DOI: 10.1101/Gad.291377.116  0.4
2016 Fang Q, Chen P, Wang M, Fang J, Yang N, Li G, Xu RM. Correction: Human cytomegalovirus IE1 alters the higher-order chromatin structure by targeting the acidic patch of the nucleosome. Elife. 5. PMID 26974472 DOI: 10.7554/Elife.15893  0.336
2016 Fu W, Liu N, Qiao Q, Wang M, Min J, Zhu B, Xu RM, Yang N. Structural Basis for Substrate Preference of SMYD3, A SET Domain-containing Protein Lysine Methyltransferase. The Journal of Biological Chemistry. PMID 26929412 DOI: 10.1074/Jbc.M115.709832  0.431
2016 Fang Q, Chen P, Wang M, Fang J, Yang N, Li G, Xu RM. Human cytomegalovirus IE1 protein alters the higher-order chromatin structure by targeting the acidic patch of the nucleosome. Elife. 5. PMID 26812545 DOI: 10.7554/Elife.11911  0.433
2016 Fang Q, Chen P, Wang M, Fang J, Yang N, Li G, Xu R. Author response: Human cytomegalovirus IE1 protein alters the higher-order chromatin structure by targeting the acidic patch of the nucleosome Elife. DOI: 10.7554/Elife.11911.012  0.357
2015 Gao GN, Wang M, Yang N, Huang Y, Xu RM. Structure of Zeste-DNA Complex Reveals a New Modality of DNA Recognition by Homeodomain-Like Proteins. Journal of Molecular Biology. PMID 26478222 DOI: 10.1016/J.Jmb.2015.10.008  0.408
2015 Yang N, Yu Z, Hu M, Wang M, Lehmann R, Xu RM. Structure of Drosophila Oskar reveals a novel RNA binding protein. Proceedings of the National Academy of Sciences of the United States of America. 112: 11541-6. PMID 26324911 DOI: 10.1073/Pnas.1515568112  0.408
2015 Wang H, Wang M, Yang N, Xu RM. Structure of the quaternary complex of histone H3-H4 heterodimer with chaperone ASF1 and the replicative helicase subunit MCM2. Protein & Cell. 6: 693-7. PMID 26186914 DOI: 10.1007/S13238-015-0190-0  0.368
2015 Cao D, Wang M, Qiu X, Liu D, Jiang H, Yang N, Xu RM. Structural basis for allosteric, substrate-dependent stimulation of SIRT1 activity by resveratrol. Genes & Development. 29: 1316-25. PMID 26109052 DOI: 10.1101/Gad.265462.115  0.371
2015 Fang J, Liu Y, Wei Y, Deng W, Yu Z, Huang L, Teng Y, Yao T, You Q, Ruan H, Chen P, Xu RM, Li G. Structural transitions of centromeric chromatin regulate the cell cycle-dependent recruitment of CENP-N. Genes & Development. 29: 1058-73. PMID 25943375 DOI: 10.1101/Gad.259432.115  0.39
2015 Yu Z, Zhou X, Wang W, Deng W, Fang J, Hu H, Wang Z, Li S, Cui L, Shen J, Zhai L, Peng S, Wong J, Dong S, Yuan Z, ... ... Xu RM, et al. Dynamic phosphorylation of CENP-A at Ser68 orchestrates its cell-cycle-dependent deposition at centromeres. Developmental Cell. 32: 68-81. PMID 25556658 DOI: 10.1016/J.Devcel.2014.11.030  0.312
2014 Li Y, Zhang L, Liu T, Chai C, Fang Q, Wu H, Agudelo Garcia PA, Han Z, Zong S, Yu Y, Zhang X, Parthun MR, Chai J, Xu RM, Yang M. Hat2p recognizes the histone H3 tail to specify the acetylation of the newly synthesized H3/H4 heterodimer by the Hat1p/Hat2p complex. Genes & Development. 28: 1217-27. PMID 24835250 DOI: 10.1101/Gad.240531.114  0.402
2014 Zhou T, Xiong J, Wang M, Yang N, Wong J, Zhu B, Xu RM. Structural basis for hydroxymethylcytosine recognition by the SRA domain of UHRF2. Molecular Cell. 54: 879-86. PMID 24813944 DOI: 10.1016/J.Molcel.2014.04.003  0.429
2014 Ren R, Liu H, Wang W, Wang M, Yang N, Dong YH, Gong W, Lehmann R, Xu RM. Structure and domain organization of Drosophila Tudor. Cell Research. 24: 1146-9. PMID 24810300 DOI: 10.1038/Cr.2014.63  0.36
2014 Song F, Chen P, Sun D, Wang M, Dong L, Liang D, Xu RM, Zhu P, Li G. Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units. Science (New York, N.Y.). 344: 376-80. PMID 24763583 DOI: 10.1126/Science.1251413  0.391
2014 Yang N, Zhou T, Xiong J, Wang M, Wong J, Zhu B, Xu R. Structural basis for hydroxymethylcytosine recognition by the SRA domain of UHRF2 Acta Crystallographica Section A. 70. DOI: 10.1107/S205327331408173X  0.392
2013 Yang D, Fang Q, Wang M, Ren R, Wang H, He M, Sun Y, Yang N, Xu RM. Nα-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain. Nature Structural & Molecular Biology. 20: 1116-8. PMID 23934152 DOI: 10.1038/Nsmb.2637  0.436
2013 Wang M, Xu RM, Thompson PR. Substrate specificity, processivity, and kinetic mechanism of protein arginine methyltransferase 5. Biochemistry. 52: 5430-40. PMID 23866019 DOI: 10.1021/Bi4005123  0.341
2013 Hsu HC, Wang CL, Wang M, Yang N, Chen Z, Sternglanz R, Xu RM. Structural basis for allosteric stimulation of Sir2 activity by Sir4 binding. Genes & Development. 27: 64-73. PMID 23307867 DOI: 10.1101/Gad.208140.112  0.489
2012 Yang N, Xu RM. Structure and function of the BAH domain in chromatin biology. Critical Reviews in Biochemistry and Molecular Biology. 48: 211-21. PMID 23181513 DOI: 10.3109/10409238.2012.742035  0.491
2012 Yang N, Wang W, Wang Y, Wang M, Zhao Q, Rao Z, Zhu B, Xu RM. Distinct mode of methylated lysine-4 of histone H3 recognition by tandem tudor-like domains of Spindlin1 Proceedings of the National Academy of Sciences of the United States of America. 109: 17954-17959. PMID 23077255 DOI: 10.1073/Pnas.1208517109  0.477
2012 Wang L, Yang F, Zhang D, Chen Z, Xu R, Nierhaus KH, Gong W, Qin Y. A conserved proline switch on the ribosome facilitates the recruitment and binding of trGTPases Nature Structural & Molecular Biology. 19: 403-410. PMID 22407015 DOI: 10.1038/Nsmb.2254  0.318
2012 Lin PC, Xu RM. Structure and assembly of the SF3a splicing factor complex of U2 snRNP. The Embo Journal. 31: 1579-90. PMID 22314233 DOI: 10.1038/Emboj.2012.7  0.389
2011 Sun L, Wang M, Lv Z, Yang N, Liu Y, Bao S, Gong W, Xu RM. Structural insights into protein arginine symmetric dimethylation by PRMT5. Proceedings of the National Academy of Sciences of the United States of America. 108: 20538-43. PMID 22143770 DOI: 10.1073/Pnas.1106946108  0.562
2011 Wang W, Chen Z, Mao Z, Zhang H, Ding X, Chen S, Zhang X, Xu R, Zhu B. Nucleolar protein Spindlin1 recognizes H3K4 methylation and stimulates the expression of rRNA genes. Embo Reports. 12: 1160-6. PMID 21960006 DOI: 10.1038/Embor.2011.184  0.388
2011 Hu H, Liu Y, Wang M, Fang J, Huang H, Yang N, Li Y, Wang J, Yao X, Shi Y, Li G, Xu RM. Structure of a CENP-A-histone H4 heterodimer in complex with chaperone HJURP. Genes & Development. 25: 901-6. PMID 21478274 DOI: 10.1101/Gad.2045111  0.46
2011 Qiao Q, Li Y, Chen Z, Wang M, Reinberg D, Xu RM. The structure of NSD1 reveals an autoregulatory mechanism underlying histone H3K36 methylation. The Journal of Biological Chemistry. 286: 8361-8. PMID 21196496 DOI: 10.1074/Jbc.M110.204115  0.45
2010 Liu H, Wang JY, Huang Y, Li Z, Gong W, Lehmann R, Xu RM. Structural basis for methylarginine-dependent recognition of Aubergine by Tudor. Genes & Development. 24: 1876-81. PMID 20713507 DOI: 10.1101/Gad.1956010  0.45
2009 Li Y, Trojer P, Xu CF, Cheung P, Kuo A, Drury WJ, Qiao Q, Neubert TA, Xu RM, Gozani O, Reinberg D. The target of the NSD family of histone lysine methyltransferases depends on the nature of the substrate. The Journal of Biological Chemistry. 284: 34283-95. PMID 19808676 DOI: 10.1074/Jbc.M109.034462  0.374
2009 Hayashi MK, Tang C, Verpelli C, Narayanan R, Stearns MH, Xu RM, Li H, Sala C, Hayashi Y. The postsynaptic density proteins Homer and Shank form a polymeric network structure. Cell. 137: 159-71. PMID 19345194 DOI: 10.1016/j.cell.2009.01.050  0.386
2007 Yang X, Zhou J, Sun L, Wei Z, Gao J, Gong W, Xu RM, Rao Z, Liu Y. Structural basis for the function of DCN-1 in protein Neddylation. The Journal of Biological Chemistry. 282: 24490-4. PMID 17597076 DOI: 10.1074/Jbc.C700038200  0.452
2006 Li Z, Cao R, Wang M, Myers MP, Zhang Y, Xu RM. Structure of a Bmi-1-Ring1B polycomb group ubiquitin ligase complex. The Journal of Biological Chemistry. 281: 20643-9. PMID 16714294 DOI: 10.1074/Jbc.M602461200  0.414
2006 Huang Y, Myers MP, Xu RM. Crystal structure of the HP1-EMSY complex reveals an unusual mode of HP1 binding. Structure (London, England : 1993). 14: 703-12. PMID 16615912 DOI: 10.1016/J.Str.2006.01.007  0.474
2006 Connelly JJ, Yuan P, Hsu HC, Li Z, Xu RM, Sternglanz R. Structure and function of the Saccharomyces cerevisiae Sir3 BAH domain. Molecular and Cellular Biology. 26: 3256-65. PMID 16581798 DOI: 10.1128/Mcb.26.8.3256-3265.2006  0.431
2006 Hu G, Lin G, Wang M, Dick L, Xu RM, Nathan C, Li H. Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate. Molecular Microbiology. 59: 1417-28. PMID 16468986 DOI: 10.1111/J.1365-2958.2005.05036.X  0.338
2005 Hsu HC, Stillman B, Xu RM. Structural basis for origin recognition complex 1 protein-silence information regulator 1 protein interaction in epigenetic silencing. Proceedings of the National Academy of Sciences of the United States of America. 102: 8519-24. PMID 15937111 DOI: 10.1073/Pnas.0502946102  0.468
2004 Shi H, Cordin O, Minder CM, Linder P, Xu RM. Crystal structure of the human ATP-dependent splicing and export factor UAP56. Proceedings of the National Academy of Sciences of the United States of America. 101: 17628-33. PMID 15585580 DOI: 10.1073/Pnas.0408172101  0.402
2004 Chiodi I, Corioni M, Giordano M, Valgardsdottir R, Ghigna C, Cobianchi F, Xu R, Riva S, Biamonti G. RNA recognition motif 2 directs the recruitment of SF2/ASF to nuclear stress bodies. Nucleic Acids Research. 32: 4127-4136. PMID 15302913 DOI: 10.1093/Nar/Gkh759  0.376
2003 Landry J, Sutton A, Hesman T, Min J, Xu RM, Johnston M, Sternglanz R. Set2-catalyzed methylation of histone H3 represses basal expression of GAL4 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 23: 5972-8. PMID 12917322 DOI: 10.1128/Mcb.23.17.5972-5978.2003  0.381
2003 Min J, Zhang Y, Xu R. Structural basis for specific binding of Polycomb chromodomain to histone H3 methylated at Lys 27 Genes & Development. 17: 1823-1828. PMID 12897052 DOI: 10.1101/Gad.269603  0.467
2003 Xu RM. A pivotal role of the coiled coil of Sir4 Structure. 11: 608-609. PMID 12791247 DOI: 10.1016/S0969-2126(03)00102-3  0.436
2003 Shi H, Xu RM. Crystal structure of the Drosophila Mago nashi-Y14 complex. Genes & Development. 17: 971-6. PMID 12704080 DOI: 10.1101/Gad.260403  0.362
2003 Min J, Feng Q, Li Z, Zhang Y, Xu R. Structure of the catalytic domain of human DOT1L, a non-SET domain nucleosomal histone methyltransferase. Cell. 112: 711-723. PMID 12628190 DOI: 10.1016/S0092-8674(03)00114-4  0.499
2002 Ng HH, Xu RM, Zhang Y, Struhl K. Ubiquitination of histone H2B by Rad6 is required for efficient Dot1-mediated methylation of histone H3 lysine 79. The Journal of Biological Chemistry. 277: 34655-7. PMID 12167634 DOI: 10.1074/Jbc.C200433200  0.407
2002 Vitali J, Ding J, Jiang J, Zhang Y, Krainer AR, Xu RM. Correlated alternative side chain conformations in the RNA-recognition motif of heterogeneous nuclear ribonucleoprotein A1. Nucleic Acids Research. 30: 1531-8. PMID 11917013 DOI: 10.1093/Nar/30.7.1531  0.367
2001 Min J, Landry J, Sternglanz R, Xu RM. Crystal structure of a SIR2 homolog-NAD complex. Cell. 105: 269-79. PMID 11336676 DOI: 10.1016/S0092-8674(01)00317-8  0.467
2000 Jiang J, Horowitz DS, Xu RM. Crystal structure of the functional domain of the splicing factor Prp18. Proceedings of the National Academy of Sciences of the United States of America. 97: 3022-7. PMID 10737784 DOI: 10.1073/Pnas.97.7.3022  0.388
1999 Jiang J, Zhang Y, Krainer AR, Xu RM. Crystal structure of human p32, a doughnut-shaped acidic mitochondrial matrix protein. Proceedings of the National Academy of Sciences of the United States of America. 96: 3572-7. PMID 10097078 DOI: 10.1073/Pnas.96.7.3572  0.322
1995 Xu R, Carmel G, Sweet R, Kuret J, Cheng X. Crystal structure of casein kinase-1, a phosphate-directed protein kinase. The Embo Journal. 14: 1015-1023. DOI: 10.1002/J.1460-2075.1995.Tb07082.X  0.319
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