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Aaron M Rosenfeld - Publications

Affiliations: 
Drexel University, Philadelphia, PA, United States 
Area:
bioinformatics
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13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Rosenfeld AM, Meng W, Horne KI, Chen EC, Bagnara D, Stervbo U, Luning Prak ET. Bulk gDNA Sequencing of Antibody Heavy-Chain Gene Rearrangements for Detection and Analysis of B-Cell Clone Distribution: A Method by the AIRR Community. Methods in Molecular Biology (Clifton, N.J.). 2453: 317-343. PMID 35622334 DOI: 10.1007/978-1-0716-2115-8_18  0.321
2022 Marquez S, Babrak L, Greiff V, Hoehn KB, Lees WD, Luning Prak ET, Miho E, Rosenfeld AM, Schramm CA, Stervbo U. Adaptive Immune Receptor Repertoire (AIRR) Community Guide to Repertoire Analysis. Methods in Molecular Biology (Clifton, N.J.). 2453: 297-316. PMID 35622333 DOI: 10.1007/978-1-0716-2115-8_17  0.314
2022 Babrak L, Marquez S, Busse CE, Lees WD, Miho E, Ohlin M, Rosenfeld AM, Stervbo U, Watson CT, Schramm CA. Adaptive Immune Receptor Repertoire (AIRR) Community Guide to TR and IG Gene Annotation. Methods in Molecular Biology (Clifton, N.J.). 2453: 279-296. PMID 35622332 DOI: 10.1007/978-1-0716-2115-8_16  0.37
2020 Kuri-Cervantes L, Pampena MB, Meng W, Rosenfeld AM, Ittner CAG, Weisman AR, Agyekum RS, Mathew D, Baxter AE, Vella LA, Kuthuru O, Apostolidis SA, Bershaw L, Dougherty J, Greenplate AR, et al. Comprehensive mapping of immune perturbations associated with severe COVID-19. Science Immunology. 5. PMID 32669287 DOI: 10.1126/Sciimmunol.Abd7114  0.353
2020 Kuri-Cervantes L, Pampena MB, Meng W, Rosenfeld AM, Ittner CAG, Weisman AR, Agyekum R, Mathew D, Baxter AE, Vella L, Kuthuru O, Apostolidis S, Bershaw L, Dougherty J, Greenplate AR, et al. Immunologic perturbations in severe COVID-19/SARS-CoV-2 infection. Biorxiv : the Preprint Server For Biology. PMID 32511394 DOI: 10.1101/2020.05.18.101717  0.34
2020 Johnson JL, Rosenthal RL, Knox JJ, Myles A, Naradikian MS, Madej J, Kostiv M, Rosenfeld AM, Meng W, Christensen SR, Hensley SE, Yewdell J, Canaday DH, Zhu J, McDermott AB, et al. The Transcription Factor T-bet Resolves Memory B Cell Subsets with Distinct Tissue Distributions and Antibody Specificities in Mice and Humans. Immunity. PMID 32353250 DOI: 10.1016/J.Immuni.2020.03.020  0.356
2019 Trivedi N, Weisel F, Smita S, Joachim S, Kader M, Radhakrishnan A, Clouser C, Rosenfeld AM, Chikina M, Vigneault F, Hershberg U, Ismail N, Shlomchik MJ. Liver Is a Generative Site for the B Cell Response to Ehrlichia muris. Immunity. PMID 31732168 DOI: 10.1016/J.Immuni.2019.10.004  0.346
2018 Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA, Christley S, Laserson U. AIRR Community Standardized Representations for Annotated Immune Repertoires. Frontiers in Immunology. 9: 2206. PMID 30323809 DOI: 10.3389/Fimmu.2018.02206  0.413
2018 Rosenfeld AM, Meng W, Luning Prak ET, Hershberg U. ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data. Frontiers in Immunology. 9: 2107. PMID 30298069 DOI: 10.3389/Fimmu.2018.02107  0.398
2018 Rosenfeld AM, Meng W, Chen DY, Zhang B, Granot T, Farber DL, Hershberg U, Luning Prak ET. Computational Evaluation of B-Cell Clone Sizes in Bulk Populations. Frontiers in Immunology. 9: 1472. PMID 30008715 DOI: 10.3389/Fimmu.2018.01472  0.444
2017 Meng W, Zhang B, Schwartz GW, Rosenfeld AM, Ren D, Thome JJC, Carpenter DJ, Matsuoka N, Lerner H, Friedman AL, Granot T, Farber DL, Shlomchik MJ, Hershberg U, Luning Prak ET. An atlas of B-cell clonal distribution in the human body. Nature Biotechnology. PMID 28829438 DOI: 10.1038/Nbt.3942  0.388
2016 Toby IT, Levin MK, Salinas EA, Christley S, Bhattacharya S, Breden F, Buntzman A, Corrie B, Fonner J, Gupta NT, Hershberg U, Marthandan N, Rosenfeld A, Rounds W, Rubelt F, et al. VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. Bmc Bioinformatics. 17: 333. PMID 27766961 DOI: 10.1186/S12859-016-1214-3  0.39
2016 Rosenfeld AM, Meng W, Luning Prak ET, Hershberg U. ImmuneDB: A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data. Bioinformatics (Oxford, England). PMID 27616708 DOI: 10.1093/Bioinformatics/Btw593  0.415
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