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Roman Tuma - Publications

Affiliations: 
University of Alabama, Birmingham, Birmingham, AL, United States 
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Calabrese AN, Schiffrin B, Watson M, Karamanos TK, Walko M, Humes JR, Horne JE, White P, Wilson AJ, Kalli AC, Tuma R, Ashcroft AE, Brockwell DJ, Radford SE. Inter-domain dynamics in the chaperone SurA and multi-site binding to its outer membrane protein clients. Nature Communications. 11: 2155. PMID 32358557 DOI: 10.1038/S41467-020-15702-1  0.334
2018 Kaščáková B, Franta Z, Prudniková T, Kutý M, Tuma R, Kutá Smatanová I. Structure–functional studies of protein P4 from bacteriophage φ8 Acta Crystallographica Section a Foundations and Advances. 74: e200-e200. DOI: 10.1107/s2053273318092161  0.314
2017 Patel N, Wroblewski E, Leonov G, Phillips SEV, Tuma R, Twarock R, Stockley PG. Rewriting nature's assembly manual for a ssRNA virus. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087310 DOI: 10.1073/pnas.1706951114  0.351
2017 Patel N, White SJ, Thompson RF, Bingham R, Weiß EU, Maskell DP, Zlotnick A, Dykeman EC, Tuma R, Twarock R, Ranson NA, Stockley PG. HBV RNA pre-genome encodes specific motifs that mediate interactions with the viral core protein that promote nucleocapsid assembly. Nature Microbiology. 2: 17098. PMID 28628133 DOI: 10.1038/Nmicrobiol.2017.98  0.309
2016 Stockley PG, White SJ, Dykeman E, Manfield I, Rolfsson O, Patel N, Bingham R, Barker A, Wroblewski E, Chandler-Bostock R, Weiß EU, Ranson NA, Tuma R, Twarock R. Bacteriophage MS2 genomic RNA encodes an assembly instruction manual for its capsid. Bacteriophage. 6: e1157666. PMID 27144089 DOI: 10.1080/21597081.2016.1157666  0.309
2013 El Omari K, Meier C, Kainov D, Sutton G, Grimes JM, Poranen MM, Bamford DH, Tuma R, Stuart DI, Mancini EJ. Tracking in atomic detail the functional specializations in viral RecA helicases that occur during evolution. Nucleic Acids Research. 41: 9396-410. PMID 23939620 DOI: 10.1093/nar/gkt713  0.335
2013 Stockley PG, Twarock R, Bakker SE, Barker AM, Borodavka A, Dykeman E, Ford RJ, Pearson AR, Phillips SE, Ranson NA, Tuma R. Packaging signals in single-stranded RNA viruses: nature's alternative to a purely electrostatic assembly mechanism. Journal of Biological Physics. 39: 277-87. PMID 23704797 DOI: 10.1007/S10867-013-9313-0  0.343
2013 Borodavka A, Tuma R, Stockley PG. A two-stage mechanism of viral RNA compaction revealed by single molecule fluorescence. Rna Biology. 10: 481-9. PMID 23422316 DOI: 10.4161/rna.23838  0.328
2012 Borodavka A, Tuma R, Stockley PG. Evidence that viral RNAs have evolved for efficient, two-stage packaging. Proceedings of the National Academy of Sciences of the United States of America. 109: 15769-74. PMID 23019360 DOI: 10.1073/pnas.1204357109  0.316
2012 Mancini EJ, Tuma R. Mechanism of RNA packaging motor. Advances in Experimental Medicine and Biology. 726: 609-29. PMID 22297533 DOI: 10.1007/978-1-4614-0980-9_27  0.33
2010 Bohmová K, Hadravová R, Stokrová J, Tuma R, Ruml T, Pichová I, Rumlová M. Effect of dimerizing domains and basic residues on in vitro and in vivo assembly of Mason-Pfizer monkey virus and human immunodeficiency virus. Journal of Virology. 84: 1977-88. PMID 20007269 DOI: 10.1128/JVI.02022-09  0.331
2008 Tuma R, Tsuruta H, French KH, Prevelige PE. Detection of intermediates and kinetic control during assembly of bacteriophage P22 procapsid. Journal of Molecular Biology. 381: 1395-406. PMID 18582476 DOI: 10.1016/J.Jmb.2008.06.020  0.691
2008 Tsuruta H, Tuma R, French K, Prevelige P, Lee K, Gan L, Moyer C, Conway J, Duda R, Hendrix R, Steven A, Johnson J. Time-resolved X-ray scattering studies on bacteriophage assemblies Acta Crystallographica Section a Foundations of Crystallography. 64: C91-C92. DOI: 10.1107/S0108767308097067  0.496
2006 Kainov DE, Tuma R, Mancini EJ. Hexameric molecular motors: P4 packaging ATPase unravels the mechanism. Cellular and Molecular Life Sciences : Cmls. 63: 1095-105. PMID 16505972 DOI: 10.1007/s00018-005-5450-3  0.306
2005 Merckel MC, Huiskonen JT, Bamford DH, Goldman A, Tuma R. The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture. Molecular Cell. 18: 161-70. PMID 15837420 DOI: 10.1016/J.Molcel.2005.03.019  0.436
2005 Tuma R, Tsuruta H, Prevelige PE, Kainov DE, Poranen MM, Bamford DH. In vitro assembly of bacteriophages: Folding, kinetic control and intermediates Journal of Theoretical Medicine. 6: 139. DOI: 10.1080/08893110500150073  0.64
2004 Poranen MM, Tuma R. Self-assembly of double-stranded RNA bacteriophages. Virus Research. 101: 93-100. PMID 15010220 DOI: 10.1016/j.virusres.2003.12.009  0.43
2003 Kainov DE, Butcher SJ, Bamford DH, Tuma R. Conserved intermediates on the assembly pathway of double-stranded RNA bacteriophages. Journal of Molecular Biology. 328: 791-804. PMID 12729755 DOI: 10.1016/S0022-2836(03)00322-X  0.323
2002 Benevides JM, Juuti JT, Tuma R, Bamford DH, Thomas GJ. Characterization of subunit-specific interactions in a double-stranded RNA virus: Raman difference spectroscopy of the phi6 procapsid. Biochemistry. 41: 11946-53. PMID 12356294 DOI: 10.1021/BI0201623  0.379
2001 Sokolova A, Malfois M, Caldentey J, Svergun DI, Koch MH, Bamford DH, Tuma R. Solution structure of bacteriophage PRD1 vertex complex. The Journal of Biological Chemistry. 276: 46187-95. PMID 11577098 DOI: 10.1074/JBC.M106848200  0.406
2001 Poranen MM, Paatero AO, Tuma R, Bamford DH. Self-assembly of a viral molecular machine from purified protein and RNA constituents. Molecular Cell. 7: 845-54. PMID 11336707 DOI: 10.1016/S1097-2765(01)00228-3  0.347
2001 Tuma R, Coward LU, Kirk MC, Barnes S, Prevelige PE. Hydrogen-deuterium exchange as a probe of folding and assembly in viral capsids Journal of Molecular Biology. 306: 389-396. PMID 11178899 DOI: 10.1006/Jmbi.2000.4383  0.609
2001 Tuma R, Tsuruta H, Benevides JM, Prevelige PE, Thomas GJ. Characterization of subunit structural changes accompanying assembly of the bacteriophage P22 procapsid Biochemistry. 40: 665-674. PMID 11170383 DOI: 10.1021/Bi001965Y  0.704
2000 Caldentey J, Tuma R, Bamford DH. Assembly of bacteriophage PRD1 spike complex: role of the multidomain protein P5. Biochemistry. 39: 10566-73. PMID 10956048 DOI: 10.1021/bi000711  0.335
1999 Tuma R, Bamford JK, Bamford DH, Thomas GJ. Assembly dynamics of the nucleocapsid shell subunit (P8) of bacteriophage phi6. Biochemistry. 38: 15025-33. PMID 10555985 DOI: 10.1021/BI991473P  0.422
1999 Lanman J, Tuma R, Prevelige PE. Identification and characterization of the domain structure of bacteriophage P22 coat protein Biochemistry. 38: 14614-14623. PMID 10545185 DOI: 10.1021/Bi9915420  0.655
1999 Caetano De Sousa P, Tuma R, Prevelige PE, Silva JL, Foguel D. Cavity defects in the procapsid of bacteriophage P22 and the mechanism of capsid maturation Journal of Molecular Biology. 287: 527-538. PMID 10092457 DOI: 10.1006/Jmbi.1999.2614  0.629
1998 Tuma R, Prevelige PE, Thomas GJ. Mechanism of capsid maturation in a double-stranded DNA virus Proceedings of the National Academy of Sciences of the United States of America. 95: 9885-9890. PMID 9707570 DOI: 10.1073/Pnas.95.17.9885  0.684
1998 Tuma R, Parker MH, Weigele P, Sampson L, Sun Y, Krishna NR, Casjens S, Thomas GJ, Prevelige PE. A helical coat protein recognition domain of the bacteriophage P22 scaffolding protein Journal of Molecular Biology. 281: 81-94. PMID 9680477 DOI: 10.1006/Jmbi.1998.1916  0.673
1998 Juuti JT, Bamford DH, Tuma R, Thomas GJ. Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage phi 6. Journal of Molecular Biology. 279: 347-59. PMID 9642042 DOI: 10.1006/JMBI.1998.1772  0.33
1998 Tuma R, Thomas GJ. Mechanisms of virus assembly probed by Raman spectroscopy: the icosahedral bacteriophage P22. Biophysical Chemistry. 68: 17-31. PMID 9468607 DOI: 10.1016/S0301-4622(97)00001-X  0.476
1996 Tuma R, Bamford JH, Bamford DH, Russell MP, Thomas GJ. Structure, interactions and dynamics of PRD1 virus I. Coupling of subunit folding and capsid assembly. Journal of Molecular Biology. 257: 87-101. PMID 8632462 DOI: 10.1006/jmbi.1996.0149  0.409
1996 Tuma R, Prevelige PE, Thomas GJ. Structural transitions in the scaffolding and coat proteins of P22 virus during assembly and disassembly Biochemistry. 35: 4619-4627. PMID 8605213 DOI: 10.1021/Bi952793L  0.632
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