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Chuanyun Li - Publications

Affiliations: 
2004-2009 Center for Bioinformatics Peking University, Beijing, Beijing Shi, China 
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29 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Xiao C, Mo F, Lu Y, Xiao Q, Yao C, Li T, Qi J, Liu X, Chen JY, Zhang L, Guo T, Hu B, An NA, Li CY. Reply to: Identification of old coding regions disproves the hominoid de novo status of genes. Nature Ecology & Evolution. PMID 39187608 DOI: 10.1038/s41559-024-02515-4  0.475
2024 Liu X, Xiao C, Xu X, Zhang J, Mo F, Chen JY, Delihas N, Zhang L, An NA, Li CY. Origin of functional de novo genes in humans from "hopeful monsters". Wiley Interdisciplinary Reviews. Rna. 15: e1845. PMID 38605485 DOI: 10.1002/wrna.1845  0.606
2024 Ding W, Li X, Zhang J, Ji M, Zhang M, Zhong X, Cao Y, Liu X, Li C, Xiao C, Wang J, Li T, Yu Q, Mo F, Zhang B, ... ... Li CY, et al. Adaptive functions of structural variants in human brain development. Science Advances. 10: eadl4600. PMID 38579006 DOI: 10.1126/sciadv.adl4600  0.318
2023 Qi J, Mo F, An NA, Mi T, Wang J, Qi JT, Li X, Zhang B, Xia L, Lu Y, Sun G, Wang X, Li CY, Hu B. A Human-Specific De Novo Gene Promotes Cortical Expansion and Folding. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2204140. PMID 36638273 DOI: 10.1002/advs.202204140  0.302
2023 An NA, Zhang J, Mo F, Luan X, Tian L, Shen QS, Li X, Li C, Zhou F, Zhang B, Ji M, Qi J, Zhou WZ, Ding W, Chen JY, ... ... Li CY, et al. De novo genes with an lncRNA origin encode unique human brain developmental functionality. Nature Ecology & Evolution. PMID 36593289 DOI: 10.1038/s41559-022-01925-6  0.596
2022 Zhou WZ, Li W, Shen H, Wang RW, Chen W, Zhang Y, Zeng Q, Wang H, Yuan M, Zeng Z, Cui J, Li CY, Ye FY, Zhou Z. CHDbase: A comprehensive knowledgebase for congenital heart disease-related genes and clinical manifestations. Genomics, Proteomics & Bioinformatics. PMID 35961607 DOI: 10.1016/j.gpb.2022.08.001  0.344
2021 Li Y, Shen QS, Peng Q, Ding W, Zhang J, Zhong X, An NA, Ji M, Zhou WZ, Li CY. Polyadenylation-related isoform switching in human evolution revealed by full-length transcript structure. Briefings in Bioinformatics. PMID 33973996 DOI: 10.1093/bib/bbab157  0.436
2019 Zhang M, Gao H, Liu D, Zhong X, Shi X, Yu P, Jin L, Liu Y, Tang Y, Song Y, Liu J, Hu X, Li CY, Song L, Qin J, et al. CaMKII-δ9 promotes cardiomyopathy through disrupting UBE2T-dependent DNA repair. Nature Cell Biology. 21: 1152-1163. PMID 31481791 DOI: 10.1038/S41556-019-0380-8  0.469
2019 An NA, Ding W, Yang XZ, Peng J, He BZ, Shen QS, Lu F, He A, Zhang YE, Tan BC, Chen JY, Li CY. Evolutionarily significant A-to-I RNA editing events originated through G-to-A mutations in primates. Genome Biology. 20: 24. PMID 30712515 DOI: 10.1186/s13059-019-1638-y  0.414
2018 Xiao Y, Wang C, Chen JY, Lu F, Wang J, Hou N, Hu X, Zeng F, Ma D, Sun X, Ding Y, Zhang Y, Zheng W, Liu Y, Shang H, ... ... Li CY, et al. Deficiency of PRKD2 triggers hyperinsulinemia and metabolic disorders. Nature Communications. 9: 2015. PMID 29789568 DOI: 10.1038/S41467-018-04352-Z  0.365
2017 Zhang SJ, Wang C, Yan S, Fu A, Luan X, Li Y, Sunny Shen Q, Zhong X, Chen JY, Wang X, Chin-Ming Tan B, He A, Li CY. Isoform Evolution in Primates through Independent Combination of Alternative RNA Processing Events. Molecular Biology and Evolution. 34: 2453-2468. PMID 28957512 DOI: 10.1093/molbev/msx212  0.534
2016 Lei L, Yan SY, Yang R, Chen JY, Li Y, Bu Y, Chang N, Zhou Q, Zhu X, Li CY, Xiong JW. Spliceosomal protein eftud2 mutation leads to p53-dependent apoptosis in zebrafish neural progenitors. Nucleic Acids Research. PMID 27899647 DOI: 10.1093/nar/gkw1043  0.448
2016 Zhong X, Peng J, Shen QS, Chen JY, Gao H, Luan X, Yan S, Huang X, Zhang SJ, Xu L, Zhang X, Tan BC, Li CY. RhesusBase PopGateway: Genome-wide Population Genetics Atlas in Rhesus Macaque. Molecular Biology and Evolution. PMID 26882984 DOI: 10.1093/molbev/msw025  0.489
2015 Yang XZ, Chen JY, Liu CJ, Peng J, Wee YR, Han X, Wang C, Zhong X, Shen QS, Liu H, Cao H, Chen X, Tan BC, Li CY. Selectively Constrained RNA Editing Regulation Crosstalks with piRNA Biogenesis in Primates. Molecular Biology and Evolution. PMID 26341297 DOI: 10.1093/molbev/msv183  0.471
2015 Chen JY, Shen QS, Zhou WZ, Peng J, He BZ, Li Y, Liu CJ, Luan X, Ding W, Li S, Chen C, Tan BC, Zhang YE, He A, Li CY. Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates. Plos Genetics. 11: e1005391. PMID 26177073 DOI: 10.1371/journal.pgen.1005391  0.569
2015 Zhong X, Drgonova J, Li CY, Uhl GR. Human cell adhesion molecules: annotated functional subtypes and overrepresentation of addiction-associated genes. Annals of the New York Academy of Sciences. 1349: 83-95. PMID 25988664 DOI: 10.1111/nyas.12776  0.346
2014 Chen JY, Peng Z, Zhang R, Yang XZ, Tan BC, Fang H, Liu CJ, Shi M, Ye ZQ, Zhang YE, Deng M, Zhang X, Li CY. RNA editome in rhesus macaque shaped by purifying selection. Plos Genetics. 10: e1004274. PMID 24722121 DOI: 10.1371/journal.pgen.1004274  0.479
2014 Zhang SJ, Liu CJ, Yu P, Zhong X, Chen JY, Yang X, Peng J, Yan S, Wang C, Zhu X, Xiong J, Zhang YE, Tan BC, Li CY. Evolutionary interrogation of human biology in well-annotated genomic framework of rhesus macaque. Molecular Biology and Evolution. 31: 1309-24. PMID 24577841 DOI: 10.1093/molbev/msu084  0.567
2014 Ye AY, Liu QR, Li CY, Zhao M, Qu H. Human transporter database: comprehensive knowledge and discovery tools in the human transporter genes. Plos One. 9: e88883. PMID 24558441 DOI: 10.1371/Journal.Pone.0088883  0.662
2013 Huang Y, Xie C, Ye AY, Li CY, Gao G, Wei L. Recent adaptive events in human brain revealed by meta-analysis of positively selected genes. Plos One. 8: e61280. PMID 23593450 DOI: 10.1371/Journal.Pone.0061280  0.702
2013 Zhang SJ, Liu CJ, Shi M, Kong L, Chen JY, Zhou WZ, Zhu X, Yu P, Wang J, Yang X, Hou N, Ye Z, Zhang R, Xiao R, Zhang X, ... Li CY, et al. RhesusBase: a knowledgebase for the monkey research community. Nucleic Acids Research. 41: D892-905. PMID 22965133 DOI: 10.1093/nar/gks835  0.531
2012 Xie C, Zhang YE, Chen JY, Liu CJ, Zhou WZ, Li Y, Zhang M, Zhang R, Wei L, Li CY. Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs. Plos Genetics. 8: e1002942. PMID 23028352 DOI: 10.1371/Journal.Pgen.1002942  0.674
2011 Li CY, Zhou WZ, Zhang PW, Johnson C, Wei L, Uhl GR. Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction. Bmc Genomics. 12: 508. PMID 21999673 DOI: 10.1186/1471-2164-12-508  0.579
2011 Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li CY, Wei L. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Research. 39: W316-22. PMID 21715386 DOI: 10.1093/nar/gkr483  0.689
2010 Li CY, Zhang Y, Wang Z, Zhang Y, Cao C, Zhang PW, Lu SJ, Li XM, Yu Q, Zheng X, Du Q, Uhl GR, Liu QR, Wei L. A human-specific de novo protein-coding gene associated with human brain functions. Plos Computational Biology. 6: e1000734. PMID 20376170 DOI: 10.1371/Journal.Pcbi.1000734  0.606
2009 Saccone SF, Bierut LJ, Chesler EJ, Kalivas PW, Lerman C, Saccone NL, Uhl GR, Li CY, Philip VM, Edenberg HJ, Sherry ST, Feolo M, Moyzis RK, Rutter JL. Supplementing high-density SNP microarrays for additional coverage of disease-related genes: addiction as a paradigm. Plos One. 4: e5225. PMID 19381300 DOI: 10.1371/Journal.Pone.0005225  0.374
2009 Li CY, Liu QR, Zhang PW, Li XM, Wei L, Uhl GR. OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules. Nucleic Acids Research. 37: D251-60. PMID 18790807 DOI: 10.1093/Nar/Gkn568  0.572
2008 Li CY, Mao X, Wei L. Genes and (common) pathways underlying drug addiction. Plos Computational Biology. 4: e2. PMID 18179280 DOI: 10.1371/Journal.Pcbi.0040002  0.575
2007 Li CY, Yu Q, Ye ZQ, Sun Y, He Q, Li XM, Zhang W, Luo J, Gu X, Zheng X, Wei L. A nonsynonymous SNP in human cytosolic sialidase in a small Asian population results in reduced enzyme activity: potential link with severe adverse reactions to oseltamivir. Cell Research. 17: 357-62. PMID 17426694 DOI: 10.1038/Cr.2007.27  0.453
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