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C. Titus Brown - Publications

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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2025 Song H, Tithi SS, Brown C, Aylward FO, Jensen R, Zhang L. Virseqimprover: an integrated pipeline for viral contig error correction, extension, and annotation. Peerj. 13: e18515. PMID 39807156 DOI: 10.7717/peerj.18515  0.386
2024 Mazloom R, Pierce-Ward NT, Sharma P, Pritchard L, Brown CT, Vinatzer BA, Heath LS. LINgroups as a Robust Principled Approach to Compare and Integrate Multiple Bacterial Taxonomies. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 39374286 DOI: 10.1109/TCBB.2024.3475917  0.391
2024 Sepulveda H, Li X, Yue X, Carlos Angel J, Arteaga-Vazquez LJ, Brown C, Brunelli M, Jansz N, Puddu F, Scotcher J, Creed P, Kennedy P, Manriquez C, Myers SA, Crawford R, et al. OGT prevents DNA demethylation and suppresses the expression of transposable elements in heterochromatin by restraining TET activity genome-wide. Biorxiv : the Preprint Server For Biology. PMID 38352366 DOI: 10.1101/2024.01.31.578097  0.316
2021 Fodor ACA, Powers MM, Andrykovich K, Liu J, Lowe EK, Brown CT, Di Gregorio A, Stolfi A, Swalla BJ. The Degenerate Tale of Ascidian Tails. Integrative and Comparative Biology. PMID 33881514 DOI: 10.1093/icb/icab022  0.301
2021 Main BJ, Marcantonio M, Johnston JS, Rasgon JL, Brown CT, Barker CM. Whole-genome assembly of Culex tarsalis. G3 (Bethesda, Md.). 11. PMID 33585869 DOI: 10.1093/g3journal/jkaa063  0.312
2020 McDougall DL, Soutar CD, Perry BJ, Brown C, Alexander D, Yost CK, Stavrinides J. Isolation and Characterization of vB_PagP-SK1, a T7-Like Phage Infecting . Phage (New Rochelle, N.Y.). 1: 45-56. PMID 36147614 DOI: 10.1089/phage.2019.0012  0.317
2020 Higdon SM, Pozzo T, Kong N, Huang BC, Yang ML, Jeannotte R, Brown CT, Bennett AB, Weimer BC. Genomic characterization of a diazotrophic microbiota associated with maize aerial root mucilage. Plos One. 15: e0239677. PMID 32986754 DOI: 10.1371/journal.pone.0239677  0.395
2020 Brown CT, Moritz D, O'Brien MP, Reidl F, Reiter T, Sullivan BD. Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity. Genome Biology. 21: 164. PMID 32631445 DOI: 10.1186/S13059-020-02066-4  0.309
2020 Young AE, Mansour TA, McNabb BR, Owen JR, Trott JF, Brown CT, Van Eenennaam AL. Author Correction: Genomic and phenotypic analyses of six offspring of a genome-edited hornless bull. Nature Biotechnology. PMID 31992864 DOI: 10.1038/s41587-020-0423-5  0.301
2019 Guo J, Quensen JF, Sun Y, Wang Q, Brown CT, Cole JR, Tiedje JM. Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes. Frontiers in Genetics. 10: 957. PMID 31749830 DOI: 10.3389/Fgene.2019.00957  0.347
2019 Young AE, Mansour TA, McNabb BR, Owen JR, Trott JF, Brown CT, Van Eenennaam AL. Genomic and phenotypic analyses of six offspring of a genome-edited hornless bull. Nature Biotechnology. PMID 31591551 DOI: 10.1038/s41587-019-0266-0  0.34
2018 Gross AM, Ajay SS, Rajan V, Brown C, Bluske K, Burns NJ, Chawla A, Coffey AJ, Malhotra A, Scocchia A, Thorpe E, Dzidic N, Hovanes K, Sahoo T, Dolzhenko E, et al. Copy-number variants in clinical genome sequencing: deployment and interpretation for rare and undiagnosed disease. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30293986 DOI: 10.1038/S41436-018-0295-Y  0.308
2017 Mizzi JE, Lounsberry ZT, Brown CT, Sacks BN. Draft genome of tule elk Cervus elaphus nannodes. F1000research. 6: 1691. PMID 29333237 DOI: 10.12688/f1000research.12636.1  0.354
2017 Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta KR, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, ... ... Brown CT, et al. ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Nucleic Acids Research. PMID 29149270 DOI: 10.1093/Nar/Gkx1108  0.387
2017 Kalita CA, Moyerbrailean GA, Brown C, Wen X, Luca F, Pique-Regi R. QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays. Bioinformatics (Oxford, England). PMID 29028988 DOI: 10.1093/Bioinformatics/Btx598  0.337
2017 Olm MR, Brown CT, Brooks B, Banfield JF. dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication. The Isme Journal. PMID 28742071 DOI: 10.1038/Ismej.2017.126  0.352
2017 Mansour TA, Scott EY, Finno CJ, Bellone RR, Mienaltowski MJ, Penedo MC, Ross PJ, Valberg SJ, Murray JD, Brown CT. Tissue resolved, gene structure refined equine transcriptome. Bmc Genomics. 18: 103. PMID 28107812 DOI: 10.1186/S12864-016-3451-2  0.361
2016 Warren WC, Hillier LW, Tomlinson C, Minx P, Kremitzki M, Graves T, Markovic C, Bouk N, Pruitt KD, Thibaud-Nissen F, Schneider V, Mansour TA, Brown CT, Zimin A, Hawken R, et al. A New Chicken Genome Assembly Provides Insight into Avian Genome Structure. G3 (Bethesda, Md.). PMID 27852011 DOI: 10.1534/G3.116.035923  0.409
2016 Schmoll M, Dattenböck C, Carreras-Villaseñor N, Mendoza-Mendoza A, Tisch D, Alemán MI, Baker SE, Brown C, Cervantes-Badillo MG, Cetz-Chel J, Cristobal-Mondragon GR, Delaye L, Esquivel-Naranjo EU, Frischmann A, Gallardo-Negrete Jde J, et al. The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species. Microbiology and Molecular Biology Reviews : Mmbr. 80: 205-327. PMID 26864432 DOI: 10.1128/Mmbr.00040-15  0.347
2015 Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, et al. Third Report on Chicken Genes and Chromosomes 2015. Prepared by. Cytogenetic and Genome Research. 145: 78-179. PMID 26282327 DOI: 10.1159/000430927  0.375
2014 Stolfi A, Lowe EK, Racioppi C, Ristoratore F, Brown CT, Swalla BJ, Christiaen L. Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians. Elife. 3: e03728. PMID 25209999 DOI: 10.7554/Elife.03728  0.316
2014 Leach LJ, Belfield EJ, Jiang C, Brown C, Mithani A, Harberd NP. Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat. Bmc Genomics. 15: 276. PMID 24726045 DOI: 10.1186/1471-2164-15-276  0.35
2014 Belfield EJ, Brown C, Gan X, Jiang C, Baban D, Mithani A, Mott R, Ragoussis J, Harberd NP. Microarray-based ultra-high resolution discovery of genomic deletion mutations. Bmc Genomics. 15: 224. PMID 24655320 DOI: 10.1186/1471-2164-15-224  0.316
2014 Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Research. 42: D633-42. PMID 24288368 DOI: 10.1093/Nar/Gkt1244  0.318
2013 Fish JA, Chai B, Wang Q, Sun Y, Brown CT, Tiedje JM, Cole JR. FunGene: the functional gene pipeline and repository. Frontiers in Microbiology. 4: 291. PMID 24101916 DOI: 10.3389/Fmicb.2013.00291  0.356
2013 Mithani A, Belfield EJ, Brown C, Jiang C, Leach LJ, Harberd NP. HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids. Bmc Genomics. 14: 653. PMID 24063258 DOI: 10.1186/1471-2164-14-653  0.38
2013 Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, ... ... Brown CT, et al. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nature Genetics. 45: 415-21, 421e1-2. PMID 23435085 DOI: 10.1038/Ng.2568  0.39
2013 Brown C. The genomics revolution: relevance in healthcare today and tomorrow. The Journal of the Royal College of Physicians of Edinburgh. 42: 248-50. PMID 23113323 DOI: 10.4997/jrcpe.2012.313  0.323
2012 Albertin CB, Bonnaud L, Brown CT, Crookes-Goodson WJ, da Fonseca RR, Di Cristo C, Dilkes BP, Edsinger-Gonzales E, Freeman RM, Hanlon RT, Koenig KM, Lindgren AR, Martindale MQ, Minx P, Moroz LL, et al. Cephalopod genomics: A plan of strategies and organization. Standards in Genomic Sciences. 7: 175-88. PMID 23451296 DOI: 10.4056/Sigs.3136559  0.352
2011 Brown CT, Fishwick LK, Chokshi BM, Cuff MA, Jackson JM, Oglesby T, Rioux AT, Rodriguez E, Stupp GS, Trupp AH, Woollcombe-Clarke JS, Wright TN, Zaragoza WJ, Drew JC, Triplett EW, et al. Whole-genome sequencing and phenotypic analysis of Bacillus subtilis mutants following evolution under conditions of relaxed selection for sporulation. Applied and Environmental Microbiology. 77: 6867-77. PMID 21821766 DOI: 10.1128/Aem.05272-11  0.378
2008 Campbell PJ, Stephens PJ, Pleasance ED, O'Meara S, Li H, Santarius T, Stebbings LA, Leroy C, Edkins S, Hardy C, Teague JW, Menzies A, Goodhead I, Turner DJ, Clee CM, ... ... Brown C, et al. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. Nature Genetics. 40: 722-9. PMID 18438408 DOI: 10.1038/Ng.128  0.351
2006 Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, Cameron RA, Davidson EH. High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution. Developmental Biology. 300: 27-34. PMID 17101125 DOI: 10.1016/J.Ydbio.2006.10.016  0.779
2006 Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Brown CT, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609  0.578
2006 Tu Q, Brown CT, Davidson EH, Oliveri P. Sea urchin Forkhead gene family: phylogeny and embryonic expression. Developmental Biology. 300: 49-62. PMID 17081512 DOI: 10.1016/J.Ydbio.2006.09.031  0.771
2006 Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH. Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development. Developmental Biology. 300: 74-89. PMID 17055477 DOI: 10.1016/J.Ydbio.2006.08.039  0.765
2006 Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH. Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus. Developmental Biology. 300: 90-107. PMID 17054934 DOI: 10.1016/J.Ydbio.2006.08.033  0.77
2006 Alrubaian J, Lecaude S, Barba J, Szynskie L, Jacobs N, Bauer D, Brown C, Kaminer I, Bagrosky B, Dores RM. Trends in the evolution of the prodynorphin gene in teleosts: Cloning of eel and tilapia prodynorphin cDNAs Peptides. 27: 797-804. PMID 16274850 DOI: 10.1016/J.Peptides.2005.09.007  0.345
2006 Bennett ST, Barnes C, Cox A, Davies L, Brown C. Toward the 1,000 dollars human genome. Pharmacogenomics. 6: 373-82. PMID 16004555 DOI: 10.1517/14622416.6.4.373  0.314
2005 Brown CT, Xie Y, Davidson EH, Cameron RA. Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison. Bmc Bioinformatics. 6: 70. PMID 15790396 DOI: 10.1186/1471-2105-6-70  0.579
2004 Cameron RA, Rast JP, Brown CT. Genomic resources for the study of sea urchin development. Methods in Cell Biology. 74: 733-57. PMID 15575629 DOI: 10.1016/S0091-679X(04)74030-3  0.39
2002 Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, et al. A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo. Developmental Biology. 246: 162-90. PMID 12027441 DOI: 10.1006/Dbio.2002.0635  0.76
2002 Yuh CH, Brown CT, Livi CB, Rowen L, Clarke PJ, Davidson EH. Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin. Developmental Biology. 246: 148-61. PMID 12027440 DOI: 10.1006/Dbio.2002.0618  0.604
2002 Brown CT, Rust AG, Clarke PJ, Pan Z, Schilstra MJ, De Buysscher T, Griffin G, Wold BJ, Cameron RA, Davidson EH, Bolouri H. New computational approaches for analysis of cis-regulatory networks. Developmental Biology. 246: 86-102. PMID 12027436 DOI: 10.1006/Dbio.2002.0619  0.684
2002 Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C, Otim O, Brown CT, Livi CB, Lee PY, Revilla R, et al. A genomic regulatory network for development. Science (New York, N.Y.). 295: 1669-78. PMID 11872831 DOI: 10.1126/Science.1069883  0.766
2000 Sharma P, Fatibene J, Ferraro F, Jia H, Monteith S, Brown C, Clayton D, O'Shaughnessy K, Brown MJ. Genome-wide search for susceptibility loci to human essential hypertension Hypertension. 35: 1291-1296. PMID 10856279 DOI: 10.1161/01.Hyp.35.6.1291  0.304
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