| Year |
Citation |
Score |
| 2024 |
Baker NR, Zhalnina K, Yuan M, Herman D, Ceja-Navarro JA, Sasse J, Jordan JS, Bowen BP, Wu L, Fossum C, Chew A, Fu Y, Saha M, Zhou J, Pett-Ridge J, et al. Nutrient and moisture limitations reveal keystone metabolites linking rhizosphere metabolomes and microbiomes. Proceedings of the National Academy of Sciences of the United States of America. 121: e2303439121. PMID 39093948 DOI: 10.1073/pnas.2303439121 |
0.563 |
|
| 2024 |
Akyuz Turumtay E, Turumtay H, Tian Y, Lin CY, Ning Chai Y, Louie KB, Chen Y, Lipzen A, Harwood T, Satish Kumar K, Bowen BP, Wang Q, Mansfield SD, Blow MJ, Petzold CJ, et al. Expression in poplar of dehydroshikimate dehydratase induces transcriptional and metabolic changes in the phenylpropanoid pathway. Journal of Experimental Botany. PMID 38809816 DOI: 10.1093/jxb/erae251 |
0.536 |
|
| 2024 |
Gomes PWP, Mannochio-Russo H, Schmid R, Zuffa S, Damiani T, Quiros-Guerrero LM, Caraballo-Rodríguez AM, Zhao HN, Yang H, Xing S, Charron-Lamoureux V, Chigumba DN, Sedio BE, Myers JA, Allard PM, ... ... Bowen BP, et al. plantMASST - Community-driven chemotaxonomic digitization of plants. Biorxiv : the Preprint Server For Biology. PMID 38798440 DOI: 10.1101/2024.05.13.593988 |
0.522 |
|
| 2024 |
Schadt C, Martin S, Carrell A, Fortner A, Hopp D, Jacobson D, Klingeman D, Kristy B, Phillips J, Piatkowski B, Miller MA, Smith M, Patil S, Flynn M, Canon S, ... ... Bowen B, et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments. Scientific Data. 11: 339. PMID 38580669 DOI: 10.1038/s41597-024-03069-7 |
0.539 |
|
| 2024 |
Feitosa-Junior OR, Lubbe A, Kosina SM, Martins-Junior J, Barbosa D, Baccari C, Zaini PA, Bowen BP, Northen TR, Lindow SE, da Silva AM. The Exometabolome of in Contact with Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones. Metabolites. 14. PMID 38392974 DOI: 10.3390/metabo14020082 |
0.559 |
|
| 2024 |
Markel K, Novak V, Bowen BP, Tian Y, Chen YC, Sirirungruang S, Zhou A, Louie KB, Northen TR, Eudes A, Scheller HV, Shih PM. Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls. Plant Physiology. PMID 38236304 DOI: 10.1093/plphys/kiae001 |
0.517 |
|
| 2024 |
Novak V, Andeer PF, Bowen BP, Ding Y, Zhalnina K, Hofmockel KS, Tomaka C, Harwood TV, van Winden MCM, Golini AN, Kosina SM, Northen TR. Reproducible growth of in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root exudation. Science Advances. 10: eadg7888. PMID 38170767 DOI: 10.1126/sciadv.adg7888 |
0.54 |
|
| 2023 |
Zheng Q, Hu Y, Kosina SM, Van Goethem MW, Tringe SG, Bowen BP, Northen TR. Conservation of beneficial microbes between the rhizosphere and the cyanosphere. The New Phytologist. PMID 37668195 DOI: 10.1111/nph.19225 |
0.539 |
|
| 2023 |
Harwood TV, Treen DGC, Wang M, de Jong W, Northen TR, Bowen BP. BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring. Scientific Reports. 13: 13462. PMID 37596301 DOI: 10.1038/s41598-023-40496-9 |
0.493 |
|
| 2023 |
Ha NS, Onley JR, Deng K, Andeer P, Bowen BP, Gupta K, Kim PW, Kuch N, Kutschke M, Parker A, Song F, Fox B, Adams PD, de Raad M, Northen TR. A combinatorial droplet microfluidic device integrated with mass spectrometry for enzyme screening. Lab On a Chip. PMID 37401915 DOI: 10.1039/d2lc00980c |
0.528 |
|
| 2023 |
Davenport R, Bowen BP, Lynch LM, Kosina SM, Shabtai I, Northen TR, Lehmann J. Decomposition decreases molecular diversity and ecosystem similarity of soil organic matter. Proceedings of the National Academy of Sciences of the United States of America. 120: e2303335120. PMID 37307452 DOI: 10.1073/pnas.2303335120 |
0.529 |
|
| 2023 |
Palmer M, Covington JK, Zhou EM, Thomas SC, Habib N, Seymour CO, Lai D, Johnston J, Hashimi A, Jiao JY, Muok AR, Liu L, Xian WD, Zhi XY, Li MM, ... ... Bowen BP, et al. Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past. The Isme Journal. PMID 37041326 DOI: 10.1038/s41396-023-01405-0 |
0.515 |
|
| 2023 |
de Raad M, Koper K, Deng K, Bowen BP, Maeda HA, Northen TR. Mass spectrometry imaging-based assays for aminotransferase activity reveal a broad substrate spectrum for a previously uncharacterized enzyme. The Journal of Biological Chemistry. 299: 102939. PMID 36702250 DOI: 10.1016/j.jbc.2023.102939 |
0.563 |
|
| 2022 |
Howard-Varona C, Roux S, Bowen BP, Silva LP, Lau R, Schwenck SM, Schwartz S, Woyke T, Northen T, Sullivan MB, Floge SA. Protist impacts on marine cyanovirocell metabolism. Isme Communications. 2: 94. PMID 37938263 DOI: 10.1038/s43705-022-00169-6 |
0.538 |
|
| 2022 |
Wilhelm RC, Barnett SE, Swenson TL, Youngblut ND, Koechli CN, Bowen BP, Northen TR, Buckley DH. Tracing Carbon Metabolism with Stable Isotope Metabolomics Reveals the Legacy of Diverse Carbon Sources in Soil. Applied and Environmental Microbiology. e0083922. PMID 36300927 DOI: 10.1128/aem.00839-22 |
0.541 |
|
| 2022 |
Wang Y, Wilhelm RC, Swenson TL, Silver A, Andeer PF, Golini A, Kosina SM, Bowen BP, Buckley DH, Northen TR. Substrate Utilization and Competitive Interactions Among Soil Bacteria Vary With Life-History Strategies. Frontiers in Microbiology. 13: 914472. PMID 35756023 DOI: 10.3389/fmicb.2022.914472 |
0.544 |
|
| 2022 |
de Raad M, Li YV, Kuehl JV, Andeer PF, Kosina SM, Hendrickson A, Saichek NR, Golini AN, Han Z, Wang Y, Bowen BP, Deutschbauer AM, Arkin AP, Chakraborty R, Northen TR. A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria. Frontiers in Microbiology. 13: 855331. PMID 35694313 DOI: 10.3389/fmicb.2022.855331 |
0.57 |
|
| 2022 |
Treen DGC, Wang M, Xing S, Louie KB, Huan T, Dorrestein PC, Northen TR, Bowen BP. SIMILE enables alignment of tandem mass spectra with statistical significance. Nature Communications. 13: 2510. PMID 35523965 DOI: 10.1038/s41467-022-30118-9 |
0.514 |
|
| 2021 |
Kosina SM, Rademacher P, Wetmore KM, de Raad M, Zemla M, Zane GM, Zulovich JJ, Chakraborty R, Bowen BP, Wall JD, Auer M, Arkin AP, Deutschbauer AM, Northen TR. Biofilm Interaction Mapping and Analysis (BIMA) of Interspecific Interactions in Co-culture Biofilms. Frontiers in Microbiology. 12: 757856. PMID 34956122 DOI: 10.3389/fmicb.2021.757856 |
0.521 |
|
| 2021 |
Petras D, Phelan VV, Acharya D, Allen AE, Aron AT, Bandeira N, Bowen BP, Belle-Oudry D, Boecker S, Cummings DA, Deutsch JM, Fahy E, Garg N, Gregor R, Handelsman J, et al. GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. Nature Methods. PMID 34862502 DOI: 10.1038/s41592-021-01339-5 |
0.485 |
|
| 2021 |
Carrell AA, Veličković D, Lawrence TJ, Bowen BP, Louie KB, Carper DL, Chu RK, Mitchell HD, Orr G, Markillie LM, Jawdy SS, Grimwood J, Shaw AJ, Schmutz J, Northen TR, et al. Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism. The Isme Journal. PMID 34845335 DOI: 10.1038/s41396-021-01136-0 |
0.555 |
|
| 2021 |
Van Goethem MW, Osborn AR, Bowen BP, Andeer PF, Swenson TL, Clum A, Riley R, He G, Koriabine M, Sandor L, Yan M, Daum CG, Yoshinaga Y, Makhalanyane TP, Garcia-Pichel F, et al. Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics. Communications Biology. 4: 1302. PMID 34795375 DOI: 10.1038/s42003-021-02809-4 |
0.551 |
|
| 2021 |
Brisson V, Mayali X, Bowen B, Golini A, Thelen M, Stuart RK, Northen TR. Identification of Effector Metabolites Using Exometabolite Profiling of Diverse Microalgae. Msystems. e0083521. PMID 34726483 DOI: 10.1128/mSystems.00835-21 |
0.538 |
|
| 2021 |
Swift CL, Louie KB, Bowen BP, Hooker CA, Solomon KV, Singan V, Daum C, Pennacchio CP, Barry K, Shutthanandan V, Evans JE, Grigoriev IV, Northen TR, O'Malley MA. Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship. Mbio. e0144221. PMID 34399620 DOI: 10.1128/mBio.01442-21 |
0.55 |
|
| 2021 |
Jabusch LK, Kim PW, Chiniquy D, Zhao Z, Wang B, Bowen B, Kang AJ, Yoshikuni Y, Deutschbauer AM, Singh AK, Northen TR. Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant-Microbe Interactions. International Journal of Molecular Sciences. 22. PMID 34360661 DOI: 10.3390/ijms22157880 |
0.497 |
|
| 2021 |
Ing N, Deng K, Chen Y, Aulitto M, Gin JW, Pham TLM, Petzold CJ, Singer SW, Bowen B, Sale KL, Simmons BA, Singh AK, Adams PD, Northen TR. A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities. Scientific Reports. 11: 11803. PMID 34083602 DOI: 10.1038/s41598-021-91181-8 |
0.506 |
|
| 2021 |
Thomas SC, Payne D, Tamadonfar KO, Seymour CO, Jiao JY, Murugapiran SK, Lai D, Lau R, Bowen BP, Silva LP, Louie KB, Huntemann M, Clum A, Spunde A, Pillay M, et al. Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of and Three Candidate Species From China and Japan. Frontiers in Microbiology. 12: 632731. PMID 34017316 DOI: 10.3389/fmicb.2021.632731 |
0.547 |
|
| 2021 |
Swift CL, Louie KB, Bowen BP, Olson HM, Purvine SO, Salamov A, Mondo SJ, Solomon KV, Wright AT, Northen TR, Grigoriev IV, Keller NP, O'Malley MA. Anaerobic gut fungi are an untapped reservoir of natural products. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33906945 DOI: 10.1073/pnas.2019855118 |
0.554 |
|
| 2021 |
Lenz R, Louie K, Sondreli K, Galanie S, Chen JG, Muchero W, Bowen B, Northen T, Leboldus J. Metabolic patterns in Septoria canker resistant and susceptible Populus trichocarpa genotypes 24 hours post-inoculation. Phytopathology. PMID 33881913 DOI: 10.1094/PHYTO-02-21-0053-R |
0.52 |
|
| 2021 |
Calhoun S, Bell TAS, Dahlin LR, Kunde Y, LaButti K, Louie KB, Kuftin A, Treen D, Dilworth D, Mihaltcheva S, Daum C, Bowen BP, Northen TR, Guarnieri MT, Starkenburg SR, et al. A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology. Communications Biology. 4: 333. PMID 33712730 DOI: 10.1038/s42003-021-01859-y |
0.512 |
|
| 2021 |
Murphy KM, Edwards J, Louie KB, Bowen BP, Sundaresan V, Northen TR, Zerbe P. Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays). Scientific Reports. 11: 333. PMID 33431904 DOI: 10.1038/s41598-020-79320-z |
0.564 |
|
| 2019 |
Chevrette MG, Carlos-Shanley C, Louie KB, Bowen BP, Northen TR, Currie CR. Taxonomic and Metabolic Incongruence in the Ancient Genus . Frontiers in Microbiology. 10: 2170. PMID 31616394 DOI: 10.3389/Fmicb.2019.02170 |
0.598 |
|
| 2019 |
Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, et al. CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria. Nature Microbiology. PMID 31611640 DOI: 10.1038/S41564-019-0573-8 |
0.577 |
|
| 2019 |
Carmody RN, Bisanz JE, Bowen BP, Maurice CF, Lyalina S, Louie KB, Treen D, Chadaideh KS, Maini Rekdal V, Bess EN, Spanogiannopoulos P, Ang QY, Bauer KC, Balon TW, Pollard KS, et al. Cooking shapes the structure and function of the gut microbiome. Nature Microbiology. PMID 31570867 DOI: 10.1038/S41564-019-0569-4 |
0.549 |
|
| 2019 |
Erbilgin O, Rübel O, Louie KB, Trinh M, Raad M, Wildish T, Udwary D, Hoover C, Deutsch S, Northen TR, Bowen BP. MAGI: A method for metabolite, annotation, and gene integration. Acs Chemical Biology. PMID 30896917 DOI: 10.1021/Acschembio.8B01107 |
0.592 |
|
| 2019 |
Roth MS, Gallaher SD, Westcott DJ, Iwai M, Louie KB, Mueller M, Walter A, Foflonker F, Bowen BP, Ataii NN, Song J, Chen JH, Blaby-Haas C, Larabell C, Auer M, et al. Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga Chromochloris zofingiensis. The Plant Cell. PMID 30787178 DOI: 10.1105/Tpc.18.00742 |
0.585 |
|
| 2018 |
Porcar M, Louie KB, Kosina SM, Van Goethem MW, Bowen BP, Tanner K, Northen TR. Microbial Ecology on Solar Panels in Berkeley, CA, United States. Frontiers in Microbiology. 9: 3043. PMID 30619134 DOI: 10.3389/Fmicb.2018.03043 |
0.597 |
|
| 2018 |
Sasse J, Kant J, Cole BJ, Klein AP, Arsova B, Schlaepfer P, Gao J, Lewald K, Zhalnina K, Kosina S, Bowen BP, Treen D, Vogel J, Visel A, Watt M, et al. Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass. The New Phytologist. PMID 30585637 DOI: 10.1111/Nph.15662 |
0.587 |
|
| 2018 |
Kosina SM, Greiner AM, Lau RK, Jenkins S, Baran R, Bowen BP, Northen TR. Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes. Bmc Microbiology. 18: 115. PMID 30208844 DOI: 10.1186/S12866-018-1256-Y |
0.588 |
|
| 2018 |
Duncombe TA, Raad M, Bowen BP, Singh AK, Northen TR. Insulator Nanostructure Desorption Ionization Mass Spectrometry. Analytical Chemistry. PMID 30063326 DOI: 10.1021/Acs.Analchem.8B01989 |
0.546 |
|
| 2018 |
Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T, Arkin AP. Deciphering microbial interactions in synthetic human gut microbiome communities. Molecular Systems Biology. 14: e8157. PMID 29930200 DOI: 10.15252/Msb.20178157 |
0.568 |
|
| 2018 |
Zhalnina K, Louie KB, Hao Z, Mansoori N, da Rocha UN, Shi S, Cho H, Karaoz U, Loqué D, Bowen BP, Firestone MK, Northen TR, Brodie EL. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nature Microbiology. PMID 29556109 DOI: 10.1038/S41564-018-0129-3 |
0.58 |
|
| 2018 |
Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, et al. An integrated workflow for phenazine-modifying enzyme characterization. Journal of Industrial Microbiology & Biotechnology. PMID 29546662 DOI: 10.1007/S10295-018-2025-5 |
0.588 |
|
| 2018 |
Swenson TL, Karaoz U, Swenson JM, Bowen BP, Northen TR. Linking soil biology and chemistry in biological soil crust using isolate exometabolomics. Nature Communications. 9: 19. PMID 29296020 DOI: 10.1038/S41467-017-02356-9 |
0.603 |
|
| 2018 |
Jose NA, Lau R, Swenson TL, Klitgord N, Garcia-Pichel F, Bowen BP, Baran R, Northen TR. Flux balance modeling to predict bacterial survival during pulsed-activity events Biogeosciences. 15: 2219-2229. DOI: 10.5194/Bg-15-2219-2018 |
0.604 |
|
| 2017 |
Zhou A, Lau R, Baran R, Ma J, von Netzer F, Shi W, Gorman-Lewis D, Kempher ML, He Z, Qin Y, Shi Z, Zane GM, Wu L, Bowen BP, Northen TR, et al. Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris. Mbio. 8. PMID 29138306 DOI: 10.1128/Mbio.01780-17 |
0.566 |
|
| 2017 |
Lubbe A, Bowen BP, Northen T. Exometabolomic Analysis of Cross-Feeding Metabolites. Metabolites. 7. PMID 28976938 DOI: 10.3390/Metabo7040050 |
0.584 |
|
| 2017 |
Rubel O, Bowen BP. BASTet: Shareable and reproducible analysis and visualization of mass spectrometry imaging data via OpenMSI. Ieee Transactions On Visualization and Computer Graphics. PMID 28866551 DOI: 10.1109/Tvcg.2017.2744479 |
0.32 |
|
| 2017 |
Gao J, Louie KB, Steinke P, Bowen BP, Raad M, Zuckermann RN, Siuzdak G, Northen TR. Morphology Driven Control of Metabolite Selectivity using Nanostructure-initiator Mass Spectrometry. Analytical Chemistry. PMID 28520405 DOI: 10.1021/Acs.Analchem.7B00599 |
0.498 |
|
| 2017 |
Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/Ng.3859 |
0.544 |
|
| 2017 |
Raad M, de Rond T, Rübel O, Keasling JD, Northen TR, Bowen BP. OpenMSI Arrayed Analysis Toolkit: Analyzing spatially defined samples using mass spectrometry imaging. Analytical Chemistry. PMID 28467051 DOI: 10.1021/Acs.Analchem.6B05004 |
0.57 |
|
| 2017 |
Erbilgin O, Bowen BP, Kosina SM, Jenkins S, Lau RK, Northen TR. Dynamic substrate preferences predict metabolic properties of a simple microbial consortium. Bmc Bioinformatics. 18: 57. PMID 28114881 DOI: 10.1186/S12859-017-1478-2 |
0.578 |
|
| 2017 |
Baran R, Lau R, Bowen BP, Diamond S, Jose N, Garcia-Pichel F, Northen TR. Extensive turnover of compatible solutes in cyanobacteria revealed by deuterium oxide (D2O) stable isotope probing. Acs Chemical Biology. PMID 28068058 DOI: 10.1021/Acschembio.6B00890 |
0.604 |
|
| 2017 |
Swenson TL, Couradeau E, Bowen BP, De Philippis R, Rossi F, Mugnai G, Northen TR. A novel method to evaluate nutrient retention by biological soil crust exopolymeric matrix Plant and Soil. 429: 53-64. DOI: 10.1007/S11104-017-3537-X |
0.551 |
|
| 2016 |
Shih PM, Vuu K, Mansoori N, Ayad L, Louie KB, Bowen BP, Northen TR, Loqué D. A robust gene-stacking method utilizing yeast assembly for plant synthetic biology. Nature Communications. 7: 13215. PMID 27782150 DOI: 10.1038/Ncomms13215 |
0.56 |
|
| 2016 |
Bouskill NJ, Wood TE, Baran R, Ye Z, Bowen BP, Lim H, Zhou J, Nostrand JD, Nico P, Northen TR, Silver WL, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. I. Changes in Microbial Functional Potential and Metabolism. Frontiers in Microbiology. 7: 525. PMID 27148214 DOI: 10.3389/Fmicb.2016.00525 |
0.573 |
|
| 2016 |
Bouskill NJ, Wood TE, Baran R, Hao Z, Ye Z, Bowen BP, Lim HC, Nico PS, Holman HY, Gilbert B, Silver WL, Northen TR, Brodie EL. Belowground Response to Drought in a Tropical Forest Soil. II. Change in Microbial Function Impacts Carbon Composition. Frontiers in Microbiology. 7: 323. PMID 27014243 DOI: 10.3389/Fmicb.2016.00323 |
0.522 |
|
| 2016 |
Gao J, Raad M, Bowen BP, Zuckermann RN, Northen TR. The Application of Black Silicon for Nanostructure-Initiator Mass Spectrometry. Analytical Chemistry. PMID 26741735 DOI: 10.1021/Acs.Analchem.5B03452 |
0.533 |
|
| 2015 |
Ngan CY, Wong CH, Choi C, Yoshinaga Y, Louie K, Jia J, Chen C, Bowen B, Cheng H, Leonelli L, Kuo R, Baran R, García-Cerdán JG, Pratap A, Wang M, et al. Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae. Nature Plants. 1: 15107. PMID 27250540 DOI: 10.1038/Nplants.2015.107 |
0.55 |
|
| 2015 |
Deng K, Guenther JM, Gao J, Bowen BP, Tran H, Reyes-Ortiz V, Cheng X, Sathitsuksanoh N, Heins R, Takasuka TE, Bergeman LF, Geertz-Hansen H, Deutsch S, Loqué D, Sale KL, et al. Development of a High Throughput Platform for Screening Glycoside Hydrolases Based on Oxime-NIMS. Frontiers in Bioengineering and Biotechnology. 3: 153. PMID 26528471 DOI: 10.3389/Fbioe.2015.00153 |
0.56 |
|
| 2015 |
Baran R, Brodie EL, Mayberry-Lewis J, Hummel E, Da Rocha UN, Chakraborty R, Bowen BP, Karaoz U, Cadillo-Quiroz H, Garcia-Pichel F, Northen TR. Exometabolite niche partitioning among sympatric soil bacteria. Nature Communications. 6: 8289. PMID 26392107 DOI: 10.1038/Ncomms9289 |
0.59 |
|
| 2015 |
Fischer CR, Ruebel O, Bowen BP. An accessible, scalable ecosystem for enabling and sharing diverse mass spectrometry imaging analyses. Archives of Biochemistry and Biophysics. PMID 26365033 DOI: 10.1016/J.Abb.2015.08.021 |
0.311 |
|
| 2015 |
Yao Y, Sun T, Wang T, Ruebel O, Northen T, Bowen BP. Analysis of Metabolomics Datasets with High-Performance Computing and Metabolite Atlases. Metabolites. 5: 431-42. PMID 26287255 DOI: 10.3390/Metabo5030431 |
0.578 |
|
| 2015 |
Dalisay DS, Kim KW, Lee C, Yang H, Rübel O, Bowen BP, Davin LB, Lewis NG. Dirigent Protein-Mediated Lignan and Cyanogenic Glucoside Formation in Flax Seed: Integrated Omics and MALDI Mass Spectrometry Imaging. Journal of Natural Products. 78: 1231-42. PMID 25981198 DOI: 10.1021/Acs.Jnatprod.5B00023 |
0.321 |
|
| 2015 |
Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie EL. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Frontiers in Microbiology. 6: 277. PMID 25926821 DOI: 10.3389/Fmicb.2015.00277 |
0.582 |
|
| 2015 |
Miquel S, Leclerc M, Martin R, Chain F, Lenoir M, Raguideau S, Hudault S, Bridonneau C, Northen T, Bowen B, Bermúdez-Humarán LG, Sokol H, Thomas M, Langella P. Identification of metabolic signatures linked to anti-inflammatory effects of Faecalibacterium prausnitzii. Mbio. 6. PMID 25900655 DOI: 10.1128/Mbio.00300-15 |
0.532 |
|
| 2015 |
Castellanos-Martín A, Castillo-Lluva S, Sáez-Freire Mdel M, Blanco-Gómez A, Hontecillas-Prieto L, Patino-Alonso C, Galindo-Villardon P, Pérez Del Villar L, Martín-Seisdedos C, Isidoro-Garcia M, Abad-Hernández Mdel M, Cruz-Hernández JJ, Rodríguez-Sánchez CA, González-Sarmiento R, Alonso-López D, ... ... Bowen B, et al. Unraveling heterogeneous susceptibility and the evolution of breast cancer using a systems biology approach. Genome Biology. 16: 40. PMID 25853295 DOI: 10.1186/S13059-015-0599-Z |
0.497 |
|
| 2015 |
Swenson TL, Bowen BP, Nico PS, Northen TR. Competitive sorption of microbial metabolites on an iron oxide mineral Soil Biology and Biochemistry. 90: 34-41. DOI: 10.1016/J.Soilbio.2015.07.022 |
0.601 |
|
| 2015 |
Swenson TL, Jenkins S, Bowen BP, Northen TR. Untargeted soil metabolomics methods for analysis of extractable organic matter Soil Biology and Biochemistry. 80: 189-198. DOI: 10.1016/J.Soilbio.2014.10.007 |
0.601 |
|
| 2014 |
Wang Y, Kora G, Bowen BP, Pan C. MIDAS: a database-searching algorithm for metabolite identification in metabolomics. Analytical Chemistry. 86: 9496-503. PMID 25157598 DOI: 10.1021/Ac5014783 |
0.35 |
|
| 2014 |
Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, et al. Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry. Acs Chemical Biology. 9: 2082-91. PMID 24984213 DOI: 10.1021/Cb500244V |
0.567 |
|
| 2014 |
Miquel S, Leclerc M, Martin R, Hudault S, Bridonneau C, Raguideau S, Northen T, Bowen BP, Bermúdez-Humarán LG, Sokol H, Thomas M, Langella P. Tu1746 Faecalibacterium prausnitzii Provides Host Beneficial Metabolic Profile During Inflammation Gastroenterology. 146: S-832. DOI: 10.1016/S0016-5085(14)63022-5 |
0.565 |
|
| 2013 |
Cheng X, Hiras J, Deng K, Bowen B, Simmons BA, Adams PD, Singer SW, Northen TR. High throughput nanostructure-initiator mass spectrometry screening of microbial growth conditions for maximal β-glucosidase production. Frontiers in Microbiology. 4: 365. PMID 24367356 DOI: 10.3389/Fmicb.2013.00365 |
0.569 |
|
| 2013 |
Louie KB, Bowen BP, Cheng X, Berleman JE, Chakraborty R, Deutschbauer A, Arkin A, Northen TR. "Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria. Analytical Chemistry. 85: 10856-62. PMID 24111681 DOI: 10.1021/Ac402240Q |
0.602 |
|
| 2013 |
Rübel O, Greiner A, Cholia S, Louie K, Bethel EW, Northen TR, Bowen BP. OpenMSI: a high-performance web-based platform for mass spectrometry imaging. Analytical Chemistry. 85: 10354-61. PMID 24087878 DOI: 10.1021/Ac402540A |
0.549 |
|
| 2013 |
Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. The Isme Journal. 7: 2178-91. PMID 23739051 DOI: 10.1038/Ismej.2013.83 |
0.572 |
|
| 2013 |
Fischer CR, Bowen BP, Pan C, Northen TR, Banfield JF. Stable-isotope probing reveals that hydrogen isotope fractionation in proteins and lipids in a microbial community are different and species-specific. Acs Chemical Biology. 8: 1755-63. PMID 23713674 DOI: 10.1021/Cb400210Q |
0.572 |
|
| 2013 |
Louie KB, Bowen BP, McAlhany S, Huang Y, Price JC, Mao JH, Hellerstein M, Northen TR. Mass spectrometry imaging for in situ kinetic histochemistry. Scientific Reports. 3: 1656. PMID 23584513 DOI: 10.1038/Srep01656 |
0.579 |
|
| 2013 |
Mosier AC, Justice NB, Bowen BP, Baran R, Thomas BC, Northen TR, Banfield JF. Metabolites associated with adaptation of microorganisms to an acidophilic, metal-rich environment identified by stable-isotope-enabled metabolomics. Mbio. 4: e00484-12. PMID 23481603 DOI: 10.1128/Mbio.00484-12 |
0.624 |
|
| 2013 |
Wattacheril J, Seeley EH, Angel P, Chen H, Bowen BP, Lanciault C, Caprioli RM, Abumrad N, Flynn CR. Differential intrahepatic phospholipid zonation in simple steatosis and nonalcoholic steatohepatitis. Plos One. 8: e57165. PMID 23451176 DOI: 10.1371/Journal.Pone.0057165 |
0.31 |
|
| 2013 |
Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Metabolic footprinting of mutant libraries to map metabolite utilization to genotype. Acs Chemical Biology. 8: 189-99. PMID 23082955 DOI: 10.1021/Cb300477W |
0.607 |
|
| 2012 |
Lee do Y, Bowen BP, Nguyen DH, Parsa S, Huang Y, Mao JH, Northen TR. Low-dose ionizing radiation-induced blood plasma metabolic response in a diverse genetic mouse population. Radiation Research. 178: 551-5. PMID 23051006 DOI: 10.1667/Rr2990.1 |
0.553 |
|
| 2012 |
Greving M, Cheng X, Reindl W, Bowen B, Deng K, Louie K, Nyman M, Cohen J, Singh A, Simmons B, Adams P, Siuzdak G, Northen T. Acoustic deposition with NIMS as a high-throughput enzyme activity assay. Analytical and Bioanalytical Chemistry. 403: 707-11. PMID 22407334 DOI: 10.1007/S00216-012-5908-8 |
0.574 |
|
| 2012 |
Fischer CR, Wilmes P, Bowen BP, Northen TR, Banfield JF. Deuterium-exchange metabolomics identifies N-methyl lyso phosphatidylethanolamines as abundant lipids in acidophilic mixed microbial communities Metabolomics. 8: 566-578. DOI: 10.1007/S11306-011-0344-X |
0.592 |
|
| 2011 |
Baran R, Bowen BP, Northen TR. Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002. Molecular Biosystems. 7: 3200-6. PMID 21935552 DOI: 10.1039/C1Mb05196B |
0.605 |
|
| 2011 |
Bowen BP, Fischer CR, Baran R, Banfield JF, Northen T. Improved genome annotation through untargeted detection of pathway-specific metabolites. Bmc Genomics. 12: S6. PMID 21810208 DOI: 10.1186/1471-2164-12-S1-S6 |
0.6 |
|
| 2011 |
Pan C, Fischer CR, Hyatt D, Bowen BP, Hettich RL, Banfield JF. Quantitative tracking of isotope flows in proteomes of microbial communities. Molecular & Cellular Proteomics : McP. 10: M110.006049. PMID 21285414 DOI: 10.1074/Mcp.M110.006049 |
0.322 |
|
| 2011 |
Reindl W, Bowen BP, Balamotis MA, Green JE, Northen TR. Multivariate analysis of a 3D mass spectral image for examining tissue heterogeneity. Integrative Biology : Quantitative Biosciences From Nano to Macro. 3: 460-7. PMID 21212877 DOI: 10.1039/C0Ib00091D |
0.518 |
|
| 2010 |
Wilmes P, Bowen BP, Thomas BC, Mueller RS, Denef VJ, VerBerkmoes NC, Hettich RL, Northen TR, Banfield JF. Metabolome-proteome differentiation coupled to microbial divergence. Mbio. 1. PMID 20978538 DOI: 10.1128/Mbio.00246-10 |
0.591 |
|
| 2010 |
Baran R, Bowen BP, Bouskill NJ, Brodie EL, Yannone SM, Northen TR. Metabolite identification in Synechococcus sp. PCC 7002 using untargeted stable isotope assisted metabolite profiling. Analytical Chemistry. 82: 9034-42. PMID 20945921 DOI: 10.1021/Ac1020112 |
0.609 |
|
| 2010 |
Xie X, Yi Z, Bowen B, Wolf C, Flynn CR, Sinha S, Mandarino LJ, Meyer C. Characterization of the Human Adipocyte Proteome and Reproducibility of Protein Abundance by One-Dimensional Gel Electrophoresis and HPLC-ESI-MS/MS. Journal of Proteome Research. 9: 4521-34. PMID 20812759 DOI: 10.1021/Pr100268F |
0.324 |
|
| 2010 |
Lee DY, Bowen BP, Northen TR. Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging. Biotechniques. 49: 557-65. PMID 20701590 DOI: 10.2144/000113451 |
0.595 |
|
| 2010 |
Bowen BP, Northen TR. Dealing with the unknown: metabolomics and metabolite atlases. Journal of the American Society For Mass Spectrometry. 21: 1471-6. PMID 20452782 DOI: 10.1016/J.Jasms.2010.04.003 |
0.618 |
|
| 2009 |
Woo HK, Go EP, Hoang L, Trauger SA, Bowen B, Siuzdak G, Northen TR. Phosphonium labeling for increasing metabolomic coverage of neutral lipids using electrospray ionization mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 23: 1849-55. PMID 19449318 DOI: 10.1002/Rcm.4076 |
0.578 |
|
| 2008 |
Yi Z, Bowen BP, Hwang H, Jenkinson CP, Coletta DK, Lefort N, Bajaj M, Kashyap S, Berria R, De Filippis EA, Mandarino LJ. Global relationship between the proteome and transcriptome of human skeletal muscle. Journal of Proteome Research. 7: 3230-41. PMID 18613714 DOI: 10.1021/Pr800064S |
0.303 |
|
| 2008 |
Højlund K, Yi Z, Hwang H, Bowen B, Lefort N, Flynn CR, Langlais P, Weintraub ST, Mandarino LJ. Characterization of the human skeletal muscle proteome by one-dimensional gel electrophoresis and HPLC-ESI-MS/MS. Molecular & Cellular Proteomics : McP. 7: 257-67. PMID 17911086 DOI: 10.1074/Mcp.M700304-Mcp200 |
0.301 |
|
| 2004 |
Bowen BP, Scruggs A, Enderlein J, Sauer M, Woodbury N. Implementation of neural networks for the identification of single molecules Journal of Physical Chemistry A. 108: 4799-4804. DOI: 10.1021/Jp036456V |
0.711 |
|
| 2004 |
Haffa ALM, Lin S, Williams JC, Bowen BP, Taguchi AKW, Allen JP, Woodbury NW. Controlling the pathway of photosynthetic charge separation in bacterial reaction centers Journal of Physical Chemistry B. 108: 4-7. DOI: 10.1021/Jp035904W |
0.546 |
|
| 2003 |
Bowen BP, Woodbury NW. TOTO binding affinity analysis using single-molecule fluorescence spectroscopy. Photochemistry and Photobiology. 78: 582-6. PMID 14743866 DOI: 10.1562/0031-8655(2003)078<0582:Tbaaus>2.0.Co;2 |
0.542 |
|
| 2003 |
Bowen BP, Enderlein J, Woodbury NW. Single-molecule fluorescence spectroscopy of TOTO on poly-AT and poly-GC DNA. Photochemistry and Photobiology. 78: 576-81. PMID 14743865 DOI: 10.1562/0031-8655(2003)078<0576:Sfsoto>2.0.Co;2 |
0.546 |
|
| 2003 |
Montaño GA, Bowen BP, LaBelle JT, Woodbury NW, Pizziconi VB, Blankenship RE. Characterization of Chlorobium tepidum chlorosomes: a calculation of bacteriochlorophyll c per chlorosome and oligomer modeling. Biophysical Journal. 85: 2560-5. PMID 14507718 DOI: 10.1016/S0006-3495(03)74678-5 |
0.553 |
|
| 2003 |
Bowen B, Woodbury N. Single-molecule Fluorescence Lifetime and Anisotropy Measurements of the Red Fluorescent Protein, DsRed, in Solution Photochemistry and Photobiology. 77: 362-369. PMID 12733647 DOI: 10.1562/0031-8655(2003)077<0362:Sflaam>2.0.Co;2 |
0.538 |
|
| 2001 |
Montano G, Bowen B, LaBelle J, Woodbury NW, Pizziconi V, Blankenship R. Determination of the number of bacteriochlorophyll molecules per chlorosome light-harvesting complex in Chlorobium tepidum Science Access. 3. DOI: 10.1071/Sa0403377 |
0.553 |
|
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