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Katherina J. Kechris, Ph.D. - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA, United States 
Area:
numerical weather prediction, astronomy, genomics
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8/26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2013 Howard JB, Kechris KJ, Rees DC, Glazer AN. Multiple amino acid sequence alignment nitrogenase component 1: insights into phylogenetics and structure-function relationships. Plos One. 8: e72751. PMID 24019874 DOI: 10.1371/Journal.Pone.0072751  0.308
2011 Pollock DD, de Koning AP, Kim H, Castoe TA, Churchill ME, Kechris KJ. Bayesian analysis of high-throughput quantitative measurement of protein-DNA interactions. Plos One. 6: e26105. PMID 22069446 DOI: 10.1371/Journal.Pone.0026105  0.355
2007 Hyunmin K, Kechris KJ, Hunter L. Mining discriminative distance context of transcription factor binding sites on ChIP enriched regions Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4463: 338-349.  0.308
2006 Kechris KJ, Lin JC, Bickel PJ, Glazer AN. Quantitative exploration of the occurrence of lateral gene transfer by using nitrogen fixation genes as a case study. Proceedings of the National Academy of Sciences of the United States of America. 103: 9584-9. PMID 16769896 DOI: 10.1073/Pnas.0603534103  0.425
2005 van Zwet EW, Kechris KJ, Bickel PJ, Eisen MB. Estimating motifs under order restrictions. Statistical Applications in Genetics and Molecular Biology. 4: Article1. PMID 16646826 DOI: 10.2202/1544-6115.1100  0.535
2005 Van Zwet EW, Kechris KJ, Bickel PJ, Eisen MB. Estimating motifs under order restrictions Statistical Applications in Genetics and Molecular Biology. 4: 16P.  0.416
2004 Kechris KJ, van Zwet E, Bickel PJ, Eisen MB. Detecting DNA regulatory motifs by incorporating positional trends in information content. Genome Biology. 5: R50. PMID 15239835 DOI: 10.1186/Gb-2004-5-7-R50  0.488
2002 Bickel PJ, Kechris KJ, Spector PC, Wedemayer GJ, Glazer AN. Finding important sites in protein sequences. Proceedings of the National Academy of Sciences of the United States of America. 99: 14764-71. PMID 12417758 DOI: 10.1073/Pnas.222508899  0.49
Low-probability matches (unlikely to be authored by this person)
2009 Glazer AN, Kechris KJ. Conserved amino acid sequence features in the alpha subunits of MoFe, VFe, and FeFe nitrogenases. Plos One. 4: e6136. PMID 19578539 DOI: 10.1371/Journal.Pone.0006136  0.257
2010 Kechris KJ, Biehs B, Kornberg TB. Generalizing moving averages for tiling arrays using combined p-value statistics. Statistical Applications in Genetics and Molecular Biology. 9: Article29. PMID 20812907 DOI: 10.2202/1544-6115.1434  0.253
2014 De S, Pedersen BS, Kechris K. The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment. Briefings in Bioinformatics. 15: 919-28. PMID 23956260 DOI: 10.1093/Bib/Bbt053  0.219
2011 Bennett B, Saba LM, Hornbaker CK, Kechris KJ, Hoffman P, Tabakoff B. Genetical genomic analysis of complex phenotypes using the PhenoGen website. Behavior Genetics. 41: 625-8. PMID 21184165 DOI: 10.1007/S10519-010-9427-0  0.211
2009 Siewert EA, Kechris KJ. Prediction of motifs based on a repeated-measures model for integrating cross-species sequence and expression data. Statistical Applications in Genetics and Molecular Biology. 8: Article 36. PMID 19799555 DOI: 10.2202/1544-6115.1464  0.187
2011 Hoffman PL, Bennett B, Saba LM, Bhave SV, Carosone-Link PJ, Hornbaker CK, Kechris KJ, Williams RW, Tabakoff B. Using the Phenogen website for 'in silico' analysis of morphine-induced analgesia: identifying candidate genes. Addiction Biology. 16: 393-404. PMID 21054686 DOI: 10.1111/J.1369-1600.2010.00254.X  0.176
2007 Bhave SV, Hornbaker C, Phang TL, Saba L, Lapadat R, Kechris K, Gaydos J, McGoldrick D, Dolbey A, Leach S, Soriano B, Ellington A, Ellington E, Jones K, Mangion J, et al. The PhenoGen informatics website: tools for analyses of complex traits. Bmc Genetics. 8: 59. PMID 17760997 DOI: 10.1186/1471-2156-8-59  0.175
2014 Ru Y, Kechris KJ, Tabakoff B, Hoffman P, Radcliffe RA, Bowler R, Mahaffey S, Rossi S, Calin GA, Bemis L, Theodorescu D. The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations. Nucleic Acids Research. 42: e133. PMID 25063298 DOI: 10.1093/Nar/Gku631  0.153
2005 Klebes A, Sustar A, Kechris K, Li H, Schubiger G, Kornberg TB. Regulation of cellular plasticity in Drosophila imaginal disc cells by the Polycomb group, trithorax group and lama genes. Development (Cambridge, England). 132: 3753-65. PMID 16077094 DOI: 10.1242/Dev.01927  0.145
2008 Tabakoff B, Saba L, Kechris K, Hu W, Bhave SV, Finn DA, Grahame NJ, Hoffman PL. The genomic determinants of alcohol preference in mice. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 19: 352-65. PMID 18563486 DOI: 10.1007/S00335-008-9115-Z  0.13
2013 Bahr TM, Hughes GJ, Armstrong M, Reisdorph R, Coldren CD, Edwards MG, Schnell C, Kedl R, LaFlamme DJ, Reisdorph N, Kechris KJ, Bowler RP. Peripheral blood mononuclear cell gene expression in chronic obstructive pulmonary disease. American Journal of Respiratory Cell and Molecular Biology. 49: 316-23. PMID 23590301 DOI: 10.1165/Rcmb.2012-0230Oc  0.112
2008 Hu W, Saba L, Kechris K, Bhave SV, Hoffman PL, Tabakoff B. Genomic insights into acute alcohol tolerance. The Journal of Pharmacology and Experimental Therapeutics. 326: 792-800. PMID 18550690 DOI: 10.1124/Jpet.108.137521  0.109
2012 Pedersen BS, Schwartz DA, Yang IV, Kechris KJ. Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values. Bioinformatics (Oxford, England). 28: 2986-8. PMID 22954632 DOI: 10.1093/Bioinformatics/Bts545  0.096
2013 Siewert E, Kechris KJ. Modeling considerations for using expression data from multiple species. Statistics in Medicine. 32: 4057-70. PMID 23703923 DOI: 10.1002/sim.5850  0.087
2007 Washenberger CL, Han JQ, Kechris KJ, Jha BK, Silverman RH, Barton DJ. Hepatitis C virus RNA: dinucleotide frequencies and cleavage by RNase L. Virus Research. 130: 85-95. PMID 17604869 DOI: 10.1016/J.Virusres.2007.05.020  0.035
2012 Downing C, Flink S, Florez-McClure ML, Johnson TE, Tabakoff B, Kechris KJ. Gene expression changes in C57BL/6J and DBA/2J mice following prenatal alcohol exposure. Alcoholism, Clinical and Experimental Research. 36: 1519-29. PMID 22530671 DOI: 10.1111/J.1530-0277.2012.01757.X  0.035
2013 Bowler RP, Bahr TM, Hughes G, Lutz S, Kim YI, Coldren CD, Reisdorph N, Kechris KJ. Integrative omics approach identifies interleukin-16 as a biomarker of emphysema. Omics : a Journal of Integrative Biology. 17: 619-26. PMID 24138069 DOI: 10.1089/Omi.2013.0038  0.033
2015 Goldstein NB, Koster MI, Hoaglin LG, Spoelstra NS, Kechris KJ, Robinson SE, Robinson WA, Roop DR, Norris DA, Birlea SA. Narrow Band Ultraviolet B Treatment for Human Vitiligo Is Associated with Proliferation, Migration, and Differentiation of Melanocyte Precursors. The Journal of Investigative Dermatology. 135: 2068-76. PMID 25822579 DOI: 10.1038/jid.2015.126  0.025
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