Michelle Girvan, Ph.D. - Publications

Affiliations: 
Physics University of Maryland, College Park, College Park, MD 
 2004 Cornell University, Ithaca, NY, United States 

51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Chandra S, Ott E, Girvan M. Critical network cascades with re-excitable nodes: Why treelike approximations usually work, when they break down, and how to correct them. Physical Review. E. 101: 062304. PMID 32688572 DOI: 10.1103/PhysRevE.101.062304  1
2020 Wikner A, Pathak J, Hunt B, Girvan M, Arcomano T, Szunyogh I, Pomerance A, Ott E. Combining machine learning with knowledge-based modeling for scalable forecasting and subgrid-scale closure of large, complex, spatiotemporal systems. Chaos (Woodbury, N.Y.). 30: 053111. PMID 32491877 DOI: 10.1063/5.0005541  1
2020 Krishnagopal S, Girvan M, Ott E, Hunt BR. Separation of chaotic signals by reservoir computing. Chaos (Woodbury, N.Y.). 30: 023123. PMID 32113243 DOI: 10.1063/1.5132766  1
2019 Peshkov A, Girvan M, Richardson DC, Losert W. Reversibility of granular rotations and translations. Physical Review. E. 100: 042905. PMID 31771010 DOI: 10.1103/PhysRevE.100.042905  1
2019 Chandra S, Girvan M, Ott E. Complexity reduction ansatz for systems of interacting orientable agents: Beyond the Kuramoto model. Chaos (Woodbury, N.Y.). 29: 053107. PMID 31154774 DOI: 10.1063/1.5093038  1
2018 Pathak J, Wikner A, Fussell R, Chandra S, Hunt BR, Girvan M, Ott E. Hybrid forecasting of chaotic processes: Using machine learning in conjunction with a knowledge-based model. Chaos (Woodbury, N.Y.). 28: 041101. PMID 31906641 DOI: 10.1063/1.5028373  1
2018 Pathak J, Hunt B, Girvan M, Lu Z, Ott E. Model-Free Prediction of Large Spatiotemporally Chaotic Systems from Data: A Reservoir Computing Approach. Physical Review Letters. 120: 024102. PMID 29376715 DOI: 10.1103/PhysRevLett.120.024102  1
2017 Pathak J, Lu Z, Hunt BR, Girvan M, Ott E. Using machine learning to replicate chaotic attractors and calculate Lyapunov exponents from data. Chaos (Woodbury, N.Y.). 27: 121102. PMID 29289043 DOI: 10.1063/1.5010300  1
2017 Lu Z, Pathak J, Hunt B, Girvan M, Brockett R, Ott E. Reservoir observers: Model-free inference of unmeasured variables in chaotic systems. Chaos (Woodbury, N.Y.). 27: 041102. PMID 28456169 DOI: 10.1063/1.4979665  1
2017 Chandra S, Hathcock D, Crain K, Antonsen TM, Girvan M, Ott E. Modeling the network dynamics of pulse-coupled neurons. Chaos (Woodbury, N.Y.). 27: 033102. PMID 28364765 DOI: 10.1063/1.4977514  1
2016 Lu Z, Squires S, Ott E, Girvan M. Inhibitory neurons promote robust critical firing dynamics in networks of integrate-and-fire neurons. Physical Review. E. 94: 062309. PMID 28085342 DOI: 10.1103/PhysRevE.94.062309  1
2016 Lu Z, Klein-Cardeña K, Lee S, Antonsen TM, Girvan M, Ott E. Resynchronization of circadian oscillators and the east-west asymmetry of jet-lag. Chaos (Woodbury, N.Y.). 26: 094811. PMID 27781473 DOI: 10.1063/1.4954275  1
2016 Burghardt K, Rand W, Girvan M. Competing opinions and stubborness: Connecting models to data Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 93. DOI: 10.1103/PhysRevE.93.032305  1
2015 Ku WL, Girvan M, Ott E. Dynamical transitions in large systems of mean field-coupled Landau-Stuart oscillators: Extensive chaos and cluster states. Chaos (Woodbury, N.Y.). 25: 123122. PMID 26723161 DOI: 10.1063/1.4938534  1
2015 Glass K, Girvan M. Finding New Order in Biological Functions from the Network Structure of Gene Annotations. Plos Computational Biology. 11: e1004565. PMID 26588252 DOI: 10.1371/journal.pcbi.1004565  1
2015 Melchionna A, Caloca J, Squires S, Antonsen TM, Ott E, Girvan M. Impact of imperfect information on network attack. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 032807. PMID 25871157 DOI: 10.1103/PhysRevE.91.032807  1
2015 Darmon D, Girvan M. Complexity-regularized regression for serially-correlated residuals with applications to stock market data Entropy. 17: 1-27. DOI: 10.3390/e17010001  1
2014 Zitin A, Gorowara A, Squires S, Herrera M, Antonsen TM, Girvan M, Ott E. Spatially embedded growing small-world networks. Scientific Reports. 4: 7047. PMID 25395180 DOI: 10.1038/srep07047  1
2014 Squires S, Pomerance A, Girvan M, Ott E. Stability of Boolean networks: the joint effects of topology and update rules. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 022814. PMID 25215788 DOI: 10.1103/PhysRevE.90.022814  1
2014 Mailman M, Harrington M, Girvan M, Losert W. Consequences of anomalous diffusion in disordered systems under cyclic forcing. Physical Review Letters. 112: 228001. PMID 24949788 DOI: 10.1103/PhysRevLett.112.228001  1
2014 Glass K, Girvan M. Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets. Scientific Reports. 4: 4191. PMID 24569707 DOI: 10.1038/srep04191  1
2014 Squires S, Pomerance A, Girvan M, Ott E. Publisher's note: Stability of Boolean networks: The joint effects of topology and update rules [Phys. Rev. e 90, 022814 (2014)] Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 90. DOI: 10.1103/PhysRevE.90.049905  1
2013 Platig J, Ott E, Girvan M. Robustness of network measures to link errors. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 062812. PMID 24483516 DOI: 10.1103/PhysRevE.88.062812  1
2013 Ku WL, Girvan M, Yuan GC, Sorrentino F, Ott E. Modeling the dynamics of bivalent histone modifications. Plos One. 8: e77944. PMID 24223747 DOI: 10.1371/journal.pone.0077944  1
2013 Squires S, Sytwu K, Alcala D, Antonsen TM, Ott E, Girvan M. Weakly explosive percolation in directed networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 052127. PMID 23767507 DOI: 10.1103/PhysRevE.87.052127  1
2013 Kiessling TR, Herrera M, Nnetu KD, Balzer EM, Girvan M, Fritsch AW, Martin SS, Käs JA, Losert W. Analysis of multiple physical parameters for mechanical phenotyping of living cells. European Biophysics Journal : Ebj. 42: 383-94. PMID 23504046 DOI: 10.1007/s00249-013-0888-y  1
2013 Darmon D, Sylvester J, Girvan M, Rand W. Predictability of user behavior in social media: Bottom-up v. top-down modeling Proceedings - Socialcom/Passat/Bigdata/Econcom/Biomedcom 2013. 102-107. DOI: 10.2139/SSRN.2285537  1
2013 Wang H, Duggal G, Patro R, Girvan M, Hannenhalli S, Kingsford C. Topological properties of chromosome conformation graphs reflect spatial proximities within chromatin 2013 Acm Conference On Bioinformatics, Computational Biology and Biomedical Informatics, Acm-Bcb 2013. 306-315. DOI: 10.1145/2506583.2506633  1
2012 Chauhan S, Girvan M, Ott E. A network function-based definition of communities in complex networks. Chaos (Woodbury, N.Y.). 22: 033129. PMID 23020468 DOI: 10.1063/1.4745854  1
2012 Squires S, Ott E, Girvan M. Dynamical instability in Boolean networks as a percolation problem. Physical Review Letters. 109: 085701. PMID 23002759 DOI: 10.1103/PhysRevLett.109.085701  1
2012 Pomerance A, Girvan M, Ott E. Stability of Boolean networks with generalized canalizing rules. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 046106. PMID 22680537 DOI: 10.1103/PhysRevE.85.046106  1
2012 Slotterback S, Mailman M, Ronaszegi K, van Hecke M, Girvan M, Losert W. Onset of irreversibility in cyclic shear of granular packings. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 021309. PMID 22463204 DOI: 10.1103/PhysRevE.85.021309  1
2012 Anderson D, Tenzer A, Barlev G, Girvan M, Antonsen TM, Ott E. Multiscale dynamics in communities of phase oscillators. Chaos (Woodbury, N.Y.). 22: 013102. PMID 22462978 DOI: 10.1063/1.3672513  1
2012 Ku WL, Duggal G, Li Y, Girvan M, Ott E. Interpreting patterns of gene expression: signatures of coregulation, the data processing inequality, and triplet motifs. Plos One. 7: e31969. PMID 22393375 DOI: 10.1371/journal.pone.0031969  1
2012 Glass K, Ott E, Losert W, Girvan M. Implications of functional similarity for gene regulatory interactions. Journal of the Royal Society, Interface / the Royal Society. 9: 1625-36. PMID 22298814 DOI: 10.1098/rsif.2011.0585  1
2011 Herrera M, McCarthy S, Slotterback S, Cephas E, Losert W, Girvan M. Path to fracture in granular flows: dynamics of contact networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 83: 061303. PMID 21797354 DOI: 10.1103/PhysRevE.83.061303  1
2011 Stout J, Whiteway M, Ott E, Girvan M, Antonsen TM. Local synchronization in complex networks of coupled oscillators. Chaos (Woodbury, N.Y.). 21: 025109. PMID 21721787 DOI: 10.1063/1.3581168  1
2011 Kempes CP, West GB, Crowell K, Girvan M. Predicting maximum tree heights and other traits from allometric scaling and resource limitations. Plos One. 6: e20551. PMID 21695189 DOI: 10.1371/journal.pone.0020551  1
2010 Barlev G, Girvan M, Ott E. Map model for synchronization of systems of many coupled oscillators. Chaos (Woodbury, N.Y.). 20: 023109. PMID 20590305 DOI: 10.1063/1.3357983  1
2010 Peters O, Girvan M. Universality Under Conditions of Self-tuning Journal of Statistical Physics. 141: 53-59. DOI: 10.1007/s10955-010-0039-0  1
2009 Chauhan S, Girvan M, Ott E. Spectral properties of networks with community structure. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 056114. PMID 20365050 DOI: 10.1103/PhysRevE.80.056114  1
2009 Pomerance A, Ott E, Girvan M, Losert W. The effect of network topology on the stability of discrete state models of genetic control. Proceedings of the National Academy of Sciences of the United States of America. 106: 8209-14. PMID 19416903 DOI: 10.1073/pnas.0900142106  1
2008 Ott E, Platig JH, Antonsen TM, Girvan M. Echo phenomena in large systems of coupled oscillators. Chaos (Woodbury, N.Y.). 18: 037115. PMID 19045489 DOI: 10.1063/1.2973816  1
2008 Antonsen TM, Faghih RT, Girvan M, Ott E, Platig J. External periodic driving of large systems of globally coupled phase oscillators. Chaos (Woodbury, N.Y.). 18: 037112. PMID 19045486 DOI: 10.1063/1.2952447  1
2006 Wiley DA, Strogatz SH, Girvan M. The size of the sync basin. Chaos (Woodbury, N.Y.). 16: 015103. PMID 16599769 DOI: 10.1063/1.2165594  1
2006 Flack JC, Girvan M, de Waal FB, Krakauer DC. Policing stabilizes construction of social niches in primates. Nature. 439: 426-9. PMID 16437106 DOI: 10.1038/nature04326  1
2004 Newman ME, Girvan M. Finding and evaluating community structure in networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 026113. PMID 14995526 DOI: 10.1103/PhysRevE.69.026113  1
2002 Newman ME, Girvan M, Farmer JD. Optimal design, robustness, and risk aversion. Physical Review Letters. 89: 028301. PMID 12097019  1
2002 Girvan M, Newman ME. Community structure in social and biological networks. Proceedings of the National Academy of Sciences of the United States of America. 99: 7821-6. PMID 12060727 DOI: 10.1073/pnas.122653799  1
2002 Girvan M, Callaway DS, Newman ME, Strogatz SH. Simple model of epidemics with pathogen mutation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 031915. PMID 11909117 DOI: 10.1103/PhysRevE.65.031915  1
2001 Jin EM, Girvan M, Newman ME. Structure of growing social networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 64: 046132. PMID 11690115 DOI: 10.1103/PhysRevE.64.046132  1
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