| Year |
Citation |
Score |
| 2019 |
Cakir M, Mukherjee S, Wood KC. Label propagation defines signaling networks associated with recurrently mutated cancer genes. Scientific Reports. 9: 9401. PMID 31253832 DOI: 10.1038/s41598-019-45603-3 |
0.318 |
|
| 2019 |
Gao T, Brodzki J, Mukherjee S. The Geometry of Synchronization Problems and Learning Group Actions Discrete and Computational Geometry. 1-62. DOI: 10.1007/S00454-019-00100-2 |
0.316 |
|
| 2018 |
Zhao S, Engelhardt BE, Mukherjee S, Dunson DB. Fast Moment Estimation for Generalized Latent Dirichlet Models. Journal of the American Statistical Association. 113: 1528-1540. PMID 35875263 DOI: 10.1080/01621459.2017.1341839 |
0.321 |
|
| 2018 |
Crawford L, Wood KC, Zhou X, Mukherjee S. Bayesian Approximate Kernel Regression with Variable Selection. Journal of the American Statistical Association. 113: 1710-1721. PMID 30799887 DOI: 10.1080/01621459.2017.1361830 |
0.345 |
|
| 2017 |
Crawford L, Zeng P, Mukherjee S, Zhou X. Detecting epistasis with the marginal epistasis test in genetic mapping studies of quantitative traits. Plos Genetics. 13: e1006869. PMID 28746338 DOI: 10.1371/Journal.Pgen.1006869 |
0.31 |
|
| 2017 |
Sun S, Hood M, Scott L, Peng Q, Mukherjee S, Tung J, Zhou X. Differential expression analysis for RNAseq using Poisson mixed models. Nucleic Acids Research. PMID 28369632 DOI: 10.1093/Nar/Gkx204 |
0.338 |
|
| 2017 |
Bobrowski O, Mukherjee S, Taylor JE. Topological consistency via kernel estimation Bernoulli. 23: 288-328. DOI: 10.3150/15-BEJ744 |
0.309 |
|
| 2017 |
Lunagómez S, Mukherjee S, Wolpert RL, Airoldi EM. Geometric Representations of Random Hypergraphs Journal of the American Statistical Association. 112: 363-383. DOI: 10.1080/01621459.2016.1141686 |
0.738 |
|
| 2016 |
Mukherjee S, Steenbergen J. Random walks on simplicial complexes and harmonics. Random Structures & Algorithms. 49: 379-405. PMID 28303080 DOI: 10.1002/Rsa.20645 |
0.666 |
|
| 2016 |
Galinsky KJ, Bhatia G, Loh PR, Georgiev S, Mukherjee S, Patterson NJ, Price AL. Response to Shen et al. American Journal of Human Genetics. 99: 1220-1221. PMID 27814525 DOI: 10.1016/J.Ajhg.2016.09.013 |
0.569 |
|
| 2016 |
Galinsky KJ, Bhatia G, Loh PR, Georgiev S, Mukherjee S, Patterson NJ, Price AL. Fast Principal-Component Analysis Reveals Convergent Evolution of ADH1B in Europe and East Asia. American Journal of Human Genetics. PMID 26924531 DOI: 10.1016/J.Ajhg.2015.12.022 |
0.602 |
|
| 2015 |
Boyer DM, Puente J, Gladman JT, Glynn C, Mukherjee S, Yapuncich GS, Daubechies I. A new fully automated approach for aligning and comparing shapes. Anatomical Record (Hoboken, N.J. : 2007). 298: 249-76. PMID 25529243 DOI: 10.1002/Ar.23084 |
0.306 |
|
| 2015 |
McGoff K, Mukherjee S, Pillai N. Statistical inference for dynamical systems: A review Statistics Surveys. 9: 209-252. DOI: 10.1214/15-Ss111 |
0.511 |
|
| 2015 |
McGoff K, Mukherjee S, Nobel A, Pillai N. Consistency of maximum likelihood estimation for some dynamical systems Annals of Statistics. 43: 1-29. DOI: 10.1214/14-Aos1259 |
0.534 |
|
| 2015 |
Raskutti G, Mukherjee S. The information geometry of mirror descent Ieee Transactions On Information Theory. 61: 1451-1457. DOI: 10.1109/Tit.2015.2388583 |
0.338 |
|
| 2014 |
Whitney O, Pfenning AR, Howard JT, Blatti CA, Liu F, Ward JM, Wang R, Audet JN, Kellis M, Mukherjee S, Sinha S, Hartemink AJ, West AE, Jarvis ED. Core and region-enriched networks of behaviorally regulated genes and the singing genome. Science (New York, N.Y.). 346: 1256780. PMID 25504732 DOI: 10.1126/Science.1256780 |
0.304 |
|
| 2014 |
Weiser M, Mukherjee S, Furey TS. Novel distal eQTL analysis demonstrates effect of population genetic architecture on detecting and interpreting associations. Genetics. 198: 879-93. PMID 25230953 DOI: 10.1534/Genetics.114.167791 |
0.332 |
|
| 2014 |
Xiong Q, Mukherjee S, Furey TS. GSAASeqSP: a toolset for gene set association analysis of RNA-Seq data. Scientific Reports. 4: 6347. PMID 25213199 DOI: 10.1038/Srep06347 |
0.335 |
|
| 2014 |
Steenbergen J, Klivans C, Mukherjee S. A Cheeger-type inequality on simplicial complexes Advances in Applied Mathematics. 56: 56-77. DOI: 10.1016/J.Aam.2014.01.002 |
0.656 |
|
| 2013 |
Blum JM, Añó L, Li Z, Van Mater D, Bennett BD, Sachdeva M, Lagutina I, Zhang M, Mito JK, Dodd LG, Cardona DM, Dodd RD, Williams N, Ma Y, Lepper C, ... ... Mukherjee S, et al. Distinct and overlapping sarcoma subtypes initiated from muscle stem and progenitor cells. Cell Reports. 5: 933-40. PMID 24239359 DOI: 10.1016/J.Celrep.2013.10.020 |
0.501 |
|
| 2013 |
Stifanelli PF, Creanza TM, Anglani R, Liuzzi VC, Mukherjee S, Schena FP, Ancona N. A comparative study of covariance selection models for the inference of gene regulatory networks. Journal of Biomedical Informatics. 46: 894-904. PMID 23876513 DOI: 10.1016/j.jbi.2013.07.002 |
0.342 |
|
| 2013 |
Runcie DE, Mukherjee S. Dissecting high-dimensional phenotypes with bayesian sparse factor analysis of genetic covariance matrices. Genetics. 194: 753-67. PMID 23636737 DOI: 10.1534/Genetics.113.151217 |
0.35 |
|
| 2013 |
Wu Q, Liang F, Mukherjee S. Kernel sliced inverse regression: Regularization and consistency Abstract and Applied Analysis. 2013. DOI: 10.1155/2013/540725 |
0.453 |
|
| 2012 |
Bennett BD, Xiong Q, Mukherjee S, Furey TS. A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning. Plos One. 7: e44635. PMID 23028573 DOI: 10.1371/Journal.Pone.0044635 |
0.587 |
|
| 2012 |
Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS. Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets. Genome Research. 22: 386-97. PMID 21940837 DOI: 10.1101/Gr.124370.111 |
0.351 |
|
| 2012 |
Anglani R, Creanza T, Liuzzi V, Stifanelli P, Maglietta R, Piepoli A, Mukherjee S, Schena F, Ancona N. Topological analysis of co-expression networks in neoplastic tissues Embnet.Journal. 18: 127. DOI: 10.14806/Ej.18.A.457 |
0.337 |
|
| 2011 |
Garman KS, Acharya CR, Edelman E, Grade M, Gaedcke J, Sud S, Barry W, Diehl AM, Provenzale D, Ginsburg GS, Ghadimi BM, Ried T, Nevins JR, Mukherjee S, Hsu D, et al. Retraction for Garman et al: A genomic approach to colon cancer risk stratification yields biologic insights into therapeutic opportunities. Proceedings of the National Academy of Sciences of the United States of America. 108: 17569. PMID 21969600 DOI: 10.1073/pnas.1115170108 |
0.413 |
|
| 2011 |
D'Addabbo A, Palmieri O, Maglietta R, Latiano A, Mukherjee S, Annese V, Ancona N. Discovering genetic variants in Crohn's disease by exploring genomic regions enriched of weak association signals. Digestive and Liver Disease : Official Journal of the Italian Society of Gastroenterology and the Italian Association For the Study of the Liver. 43: 623-31. PMID 21411385 DOI: 10.1016/j.dld.2011.02.010 |
0.313 |
|
| 2011 |
Guinney J, Wu Q, Mukherjee S. Estimating variable structure and dependence in multitask learning via gradients Machine Learning. 83: 265-287. DOI: 10.1007/S10994-010-5217-4 |
0.628 |
|
| 2010 |
Georgiev S, Boyle AP, Jayasurya K, Ding X, Mukherjee S, Ohler U. Evidence-ranked motif identification. Genome Biology. 11: R19. PMID 20156354 DOI: 10.1186/Gb-2010-11-2-R19 |
0.585 |
|
| 2010 |
Maglietta R, Distaso A, Piepoli A, Palumbo O, Carella M, D'Addabbo A, Mukherjee S, Ancona N. On the reproducibility of results of pathway analysis in genome-wide expression studies of colorectal cancers. Journal of Biomedical Informatics. 43: 397-406. PMID 19796710 DOI: 10.1016/j.jbi.2009.09.005 |
0.37 |
|
| 2010 |
Mukherjee S, Wu Q, Zhou DX. Learning gradients on manifolds Bernoulli. 16: 181-207. DOI: 10.3150/09-BEJ206 |
0.453 |
|
| 2010 |
Wu Q, Liang F, Mukherjee S. Localized sliced inverse regression Journal of Computational and Graphical Statistics. 19: 843-860. DOI: 10.1198/jcgs.2010.08080 |
0.433 |
|
| 2010 |
Edelman E, Garman K, Potti A, Mukherjee S. Making Mountains out of Molehills: Moving from Single Gene to Pathway Based Models of Colon Cancer Progression Medical Biostatistics For Complex Diseases. 73-87. DOI: 10.1002/9783527630332.ch4 |
0.448 |
|
| 2009 |
Abatangelo L, Maglietta R, Distaso A, D'Addabbo A, Creanza TM, Mukherjee S, Ancona N. Comparative study of gene set enrichment methods. Bmc Bioinformatics. 10: 275. PMID 19725948 DOI: 10.1186/1471-2105-10-275 |
0.343 |
|
| 2009 |
Tung J, Fédrigo O, Haygood R, Mukherjee S, Wray GA. Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation. Molecular Biology and Evolution. 26: 2047-59. PMID 19506001 DOI: 10.1093/Molbev/Msp113 |
0.334 |
|
| 2008 |
Garman KS, Acharya CR, Edelman E, Grade M, Gaedcke J, Sud S, Barry W, Diehl AM, Provenzale D, Ginsburg GS, Ghadimi BM, Ried T, Nevins JR, Mukherjee S, Hsu D, et al. A genomic approach to colon cancer risk stratification yields biologic insights into therapeutic opportunities. Proceedings of the National Academy of Sciences of the United States of America. 105: 19432-7. PMID 19050079 DOI: 10.1073/Pnas.0806674105 |
0.519 |
|
| 2008 |
Edelman EJ, Guinney J, Chi JT, Febbo PG, Mukherjee S. Modeling cancer progression via pathway dependencies. Plos Computational Biology. 4: e28. PMID 18282083 DOI: 10.1371/Journal.Pcbi.0040028 |
0.669 |
|
| 2007 |
Liang F, Mukherjee S, West M. The use of unlabeled data in predictive modeling Statistical Science. 22: 189-205. DOI: 10.1214/088342307000000032 |
0.349 |
|
| 2006 |
Edelman E, Porrello A, Guinney J, Balakumaran B, Bild A, Febbo PG, Mukherjee S. Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles. Bioinformatics (Oxford, England). 22: e108-16. PMID 16873460 DOI: 10.1093/Bioinformatics/Btl231 |
0.68 |
|
| 2006 |
Tropea D, Kreiman G, Lyckman A, Mukherjee S, Yu H, Horng S, Sur M. Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex. Nature Neuroscience. 9: 660-8. PMID 16633343 DOI: 10.1038/Nn1689 |
0.561 |
|
| 2006 |
Mukherjee S, Niyogi P, Poggio T, Rifkin R. Learning theory: Stability is sufficient for generalization and necessary and sufficient for consistency of empirical risk minimization Advances in Computational Mathematics. 25: 161-193. DOI: 10.1007/s10444-004-7634-z |
0.677 |
|
| 2005 |
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences of the United States of America. 102: 15545-50. PMID 16199517 DOI: 10.1073/Pnas.0506580102 |
0.35 |
|
| 2005 |
Sweet-Cordero A, Mukherjee S, Subramanian A, You H, Roix JJ, Ladd-Acosta C, Mesirov J, Golub TR, Jacks T. An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis. Nature Genetics. 37: 48-55. PMID 15608639 DOI: 10.1038/Ng1490 |
0.326 |
|
| 2005 |
Rakhlin A, Mukherjee S, Poggio T. Stability Results In Learning Theory Analysis and Applications. 3: 397-417. DOI: 10.1142/S0219530505000650 |
0.689 |
|
| 2005 |
Rakhlin A, Panchenko D, Mukherjee S. Risk bounds for mixture density estimation Esaim - Probability and Statistics. 9: 220-229. DOI: 10.1051/ps:2005011 |
0.594 |
|
| 2004 |
Poggio T, Rifkin R, Mukherjee S, Niyogi P. General conditions for predictivity in learning theory. Nature. 428: 419-22. PMID 15042089 DOI: 10.1038/nature02341 |
0.673 |
|
| 2003 |
Mukherjee S, Tamayo P, Rogers S, Rifkin R, Engle A, Campbell C, Golub TR, Mesirov JP. Estimating dataset size requirements for classifying DNA microarray data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 119-42. PMID 12804087 DOI: 10.1089/106652703321825928 |
0.343 |
|
| 2003 |
Rifkin R, Mukherjee S, Tamayo P, Ramaswamy S, Yeang CH, Angelo M, Reich M, Poggio T, Lander ES, Golub TR, Mesirov JP. An analytical method for multiclass molecular cancer classification Siam Review. 45: 706-723. DOI: 10.1137/S0036144502411986 |
0.552 |
|
| 2002 |
Miller LD, Long PM, Wong L, Mukherjee S, McShane LM, Liu ET. Optimal gene expression analysis by microarrays. Cancer Cell. 2: 353-61. PMID 12450790 DOI: 10.1016/S1535-6108(02)00181-2 |
0.328 |
|
| 2001 |
Ramaswamy S, Tamayo P, Rifkin R, Mukherjee S, Yeang CH, Angelo M, Ladd C, Reich M, Latulippe E, Mesirov JP, Poggio T, Gerald W, Loda M, Lander ES, Golub TR. Multiclass cancer diagnosis using tumor gene expression signatures. Proceedings of the National Academy of Sciences of the United States of America. 98: 15149-54. PMID 11742071 DOI: 10.1073/Pnas.211566398 |
0.552 |
|
| 2001 |
Yeang CH, Ramaswamy S, Tamayo P, Mukherjee S, Rifkin RM, Angelo M, Reich M, Lander E, Mesirov J, Golub T. Molecular classification of multiple tumor types. Bioinformatics (Oxford, England). 17: S316-22. PMID 11473023 DOI: 10.1093/Bioinformatics/17.Suppl_1.S316 |
0.314 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2008 |
Acharya CR, Hsu DS, Anders CK, Anguiano A, Salter KH, Walters KS, Redman RC, Tuchman SA, Moylan CA, Mukherjee S, Barry WT, Dressman HK, Ginsburg GS, Marcom KP, Garman KS, et al. Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. Jama. 299: 1574-87. PMID 18387932 DOI: 10.1001/Jama.299.13.1574 |
0.297 |
|
| 2006 |
Harpole DH, Petersen R, Mukherjee S, Bild A, Dressman H, Kratzke R, Kelley MJ, Garst J, Crawford J, Nevins JR, Potti A. A genomic strategy to refine prognosis in early stage non-small cell lung carcinoma (NSCLC) Journal of Clinical Oncology. 24: 7026-7026. DOI: 10.1200/Jco.2006.24.18_Suppl.7026 |
0.294 |
|
| 2011 |
Mileyko Y, Mukherjee S, Harer J. Probability measures on the space of persistence diagrams Inverse Problems. 27. DOI: 10.1088/0266-5611/27/12/124007 |
0.293 |
|
| 2009 |
Hsu DS, Acharya CR, Balakumaran BS, Riedel RF, Kim MK, Stevenson M, Tuchman S, Mukherjee S, Barry W, Dressman HK, Nevins JR, Powers S, Mu D, Potti A. Characterizing the developmental pathways TTF-1, NKX2-8, and PAX9 in lung cancer. Proceedings of the National Academy of Sciences of the United States of America. 106: 5312-7. PMID 19279207 DOI: 10.1073/Pnas.0900827106 |
0.293 |
|
| 2008 |
Salter KH, Acharya CR, Walters KS, Redman R, Anguiano A, Garman KS, Anders CK, Mukherjee S, Dressman HK, Barry WT, Marcom KP, Olson J, Nevins JR, Potti A. An integrated approach to the prediction of chemotherapeutic response in patients with breast cancer. Plos One. 3: e1908. PMID 18382681 DOI: 10.1371/Journal.Pone.0001908 |
0.293 |
|
| 2013 |
Richard Hahn P, Carvalho CM, Mukherjee S. Partial factor modeling: Predictor-dependent shrinkage for linear regression Journal of the American Statistical Association. 108: 999-1008. DOI: 10.1080/01621459.2013.779843 |
0.291 |
|
| 2012 |
Runcie DE, Garfield DA, Babbitt CC, Wygoda JA, Mukherjee S, Wray GA. Genetics of gene expression responses to temperature stress in a sea urchin gene network. Molecular Ecology. 21: 4547-62. PMID 22856327 DOI: 10.1111/J.1365-294X.2012.05717.X |
0.29 |
|
| 2018 |
Silverman JD, Durand HK, Bloom RJ, Mukherjee S, David LA. Dynamic linear models guide design and analysis of microbiota studies within artificial human guts. Microbiome. 6: 202. PMID 30419949 DOI: 10.1186/s40168-018-0584-3 |
0.29 |
|
| 2013 |
Megraw M, Mukherjee S, Ohler U. Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits. Genome Biology. 14: R85. PMID 23972209 DOI: 10.1186/Gb-2013-14-8-R85 |
0.29 |
|
| 2013 |
Hafez D, Ni T, Mukherjee S, Zhu J, Ohler U. Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation. Bioinformatics (Oxford, England). 29: i108-16. PMID 23812974 DOI: 10.1093/Bioinformatics/Btt233 |
0.289 |
|
| 2007 |
Chi JT, Rodriguez EH, Wang Z, Nuyten DS, Mukherjee S, van de Rijn M, van de Vijver MJ, Hastie T, Brown PO. Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers. Plos Genetics. 3: 1770-84. PMID 17907811 DOI: 10.1371/Journal.Pgen.0030164 |
0.288 |
|
| 2019 |
Wu F, Lopatkin AJ, Needs DA, Lee CT, Mukherjee S, You L. A unifying framework for interpreting and predicting mutualistic systems. Nature Communications. 10: 242. PMID 30651549 DOI: 10.1038/S41467-018-08188-5 |
0.284 |
|
| 2014 |
Turner K, Mukherjee S, Boyer DM. Persistent homology transform for modeling shapes and surfaces Information and Inference. 3: 310-344. DOI: 10.1093/IMAIAI/IAU011 |
0.283 |
|
| 2019 |
Washburne AD, Silverman JD, Morton JT, Becker DJ, Crowley D, Mukherjee S, David LA, Plowright RK. Phylofactorization: a graph partitioning algorithm to identify phylogenetic scales of ecological data Ecological Monographs. 89: e01353. DOI: 10.1002/Ecm.1353 |
0.282 |
|
| 2015 |
Munch E, Turner K, Bendich P, Mukherjee S, Mattingly J, Harer J. Probabilistic Fréchet means for time varying persistence diagrams Electronic Journal of Statistics. 9: 1173-1204. DOI: 10.1214/15-Ejs1030 |
0.281 |
|
| 2017 |
Washburne AD, Silverman JD, Leff JW, Bennett DJ, Darcy JL, Mukherjee S, Fierer N, David LA. Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets. Peerj. 5: e2969. PMID 28289558 DOI: 10.7717/Peerj.2969 |
0.28 |
|
| 2017 |
Gao T, Yapuncich GS, Daubechies I, Mukherjee S, Boyer DM. Development and assessment of fully automated and globally transitive geometric morphometric methods, with application to a biological comparative dataset with high interspecific variation. Anatomical Record (Hoboken, N.J. : 2007). PMID 29024541 DOI: 10.1002/Ar.23700 |
0.277 |
|
| 2018 |
Vilgalys T, Rogers J, Jolly C, Mukherjee S, Tung J. Evolution of DNA methylation in Papio baboons. Molecular Biology and Evolution. PMID 30521003 DOI: 10.1093/Molbev/Msy227 |
0.277 |
|
| 2009 |
Jesneck JL, Mukherjee S, Yurkovetsky Z, Clyde M, Marks JR, Lokshin AE, Lo JY. Do serum biomarkers really measure breast cancer? Bmc Cancer. 9: 164. PMID 19476629 DOI: 10.1186/1471-2407-9-164 |
0.277 |
|
| 2002 |
Chapelle O, Vapnik V, Bousquet O, Mukherjee S. Choosing multiple parameters for support vector machines Machine Learning. 46: 131-159. DOI: 10.1023/A:1012450327387 |
0.277 |
|
| 2019 |
Berchuck SI, Mukherjee S, Medeiros FA. Estimating Rates of Progression and Predicting Future Visual Fields in Glaucoma Using a Deep Variational Autoencoder. Scientific Reports. 9: 18113. PMID 31792321 DOI: 10.1038/s41598-019-54653-6 |
0.276 |
|
| 2008 |
Anders CK, Acharya CR, Hsu DS, Broadwater G, Garman K, Foekens JA, Zhang Y, Wang Y, Marcom K, Marks JR, Mukherjee S, Nevins JR, Blackwell KL, Potti A. Age-specific differences in oncogenic pathway deregulation seen in human breast tumors. Plos One. 3: e1373. PMID 18167534 DOI: 10.1371/Journal.Pone.0001373 |
0.275 |
|
| 2016 |
Snyder-Mackler N, Majoros WH, Yuan ML, Shaver AO, Gordon JB, Kopp GH, Schlebusch SA, Wall JD, Alberts SC, Mukherjee S, Zhou X, Tung J. Efficient Genome-Wide Sequencing and Low Coverage Pedigree Analysis from Non-invasively Collected Samples. Genetics. PMID 27098910 DOI: 10.1534/Genetics.116.187492 |
0.271 |
|
| 2007 |
Bonnefoi H, Potti A, Delorenzi M, Mauriac L, Campone M, Tubiana-Hulin M, Petit T, Rouanet P, Jassem J, Blot E, Becette V, Farmer P, André S, Acharya CR, Mukherjee S, et al. Validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: a substudy of the EORTC 10994/BIG 00-01 clinical trial. The Lancet. Oncology. 8: 1071-8. PMID 18024211 DOI: 10.1016/S1470-2045(07)70345-5 |
0.268 |
|
| 2017 |
Silverman JD, Washburne AD, Mukherjee S, David LA. A phylogenetic transform enhances analysis of compositional microbiota data. Elife. 6. PMID 28198697 DOI: 10.7554/eLife.21887 |
0.267 |
|
| 2009 |
Mito JK, Riedel RF, Dodd L, Lahat G, Lazar AJ, Dodd RD, Stangenberg L, Eward WC, Hornicek FJ, Yoon SS, Brigman BE, Jacks T, Lev D, Mukherjee S, Kirsch DG. Cross species genomic analysis identifies a mouse model as undifferentiated pleomorphic sarcoma/malignant fibrous histiocytoma. Plos One. 4: e8075. PMID 19956606 DOI: 10.1371/Journal.Pone.0008075 |
0.267 |
|
| 2017 |
Lynch J, Tang K, Priya S, Sands J, Sands M, Tang E, Mukherjee S, Knights D, Blekhman R. HOMINID: A framework for identifying associations between host genetic variation and microbiome composition. Gigascience. PMID 29126115 DOI: 10.1093/Gigascience/Gix107 |
0.265 |
|
| 2020 |
Crawford L, Monod A, Chen AX, Mukherjee S, Rabadán R. Predicting Clinical Outcomes in Glioblastoma: An Application of Topological and Functional Data Analysis Journal of the American Statistical Association. 115: 1139-1150. DOI: 10.1080/01621459.2019.1671198 |
0.265 |
|
| 2013 |
Perez BA, Ghafoori AP, Lee CL, Johnston SM, Li Y, Moroshek JG, Ma Y, Mukherjee S, Kim Y, Badea CT, Kirsch DG. Assessing the radiation response of lung cancer with different gene mutations using genetically engineered mice. Frontiers in Oncology. 3: 72. PMID 23565506 DOI: 10.3389/Fonc.2013.00072 |
0.264 |
|
| 2011 |
D'Addabbo A, Palmieri O, Latiano A, Annese V, Mukherjee S, Ancona N. RS-SNP: a random-set method for genome-wide association studies. Bmc Genomics. 12: 166. PMID 21450072 DOI: 10.1186/1471-2164-12-166 |
0.264 |
|
| 2011 |
Potti A, Mukherjee S, Petersen R, Dressman HK, Bild A, Koontz J, Kratzke R, Watson MA, Kelley M, Ginsburg GS, West M, Harpole DH, Nevins JR. Retraction: A genomic strategy to refine prognosis in early-stage non-small-cell lung cancer. N Engl J Med 2006;355:570-80. The New England Journal of Medicine. 364: 1176. PMID 21366430 DOI: 10.1056/Nejmc1101915 |
0.262 |
|
| 2012 |
Acharya CR, Hsu DS, Anders CK, Anguiano A, Salter KH, Walters KS, Redman RC, Tuchman SA, Moylan CA, Mukherjee S, Barry WT, Dressman HK, Ginsburg GS, Marcom KP, Garman KS, et al. Retraction: Acharya CR, et al. Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. JAMA. 2008;299(13):1574-1587. Jama. 307: 453. PMID 22228686 DOI: 10.1001/Jama.2012.2 |
0.262 |
|
| 2013 |
Winter DR, Song L, Mukherjee S, Furey TS, Crawford GE. DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types. Genome Research. 23: 1118-29. PMID 23657885 DOI: 10.1101/Gr.150482.112 |
0.26 |
|
| 2017 |
Singleton KR, Crawford L, Tsui E, Manchester HE, Maertens O, Liu X, Liberti MV, Magpusao AN, Stein EM, Tingley JP, Frederick DT, Boland GM, Flaherty KT, McCall SJ, Krepler C, ... ... Mukherjee S, et al. Melanoma Therapeutic Strategies that Select against Resistance by Exploiting MYC-Driven Evolutionary Convergence. Cell Reports. 21: 2796-2812. PMID 29212027 DOI: 10.1016/J.Celrep.2017.11.022 |
0.259 |
|
| 2006 |
Potti A, Mukherjee S, Petersen R, Dressman HK, Bild A, Koontz J, Kratzke R, Watson MA, Kelley M, Ginsburg GS, West M, Harpole DH, Nevins JR. A genomic strategy to refine prognosis in early-stage non-small-cell lung cancer. The New England Journal of Medicine. 355: 570-80. PMID 16899777 DOI: 10.1056/Nejmoa060467 |
0.258 |
|
| 2006 |
Wang Z, Willard HF, Mukherjee S, Furey TS. Evidence of influence of genomic DNA sequence on human X chromosome inactivation Plos Computational Biology. 2: 0979-0988. PMID 16948528 DOI: 10.1371/Journal.Pcbi.0020113 |
0.255 |
|
| 2014 |
Turner K, Mileyko Y, Mukherjee S, Harer J. Fréchet Means for Distributions of Persistence Diagrams Discrete and Computational Geometry. 52: 44-70. DOI: 10.1007/S00454-014-9604-7 |
0.253 |
|
| 2015 |
Stewart L, MacLean EL, Ivy D, Woods V, Cohen E, Rodriguez K, McIntyre M, Mukherjee S, Call J, Kaminski J, Miklósi Á, Wrangham RW, Hare B. Citizen Science as a New Tool in Dog Cognition Research. Plos One. 10: e0135176. PMID 26376443 DOI: 10.1371/Journal.Pone.0135176 |
0.248 |
|
| 2012 |
Creanza T, Maglietta R, Liuzzi V, Anglani R, Stifanelli P, Piepoli A, Mukherjee S, Schena F, Ancona N. miRNA-mRNA integrated pathway analysis: an application to colorectal cancer Embnet.Journal. 18: 129. DOI: 10.14806/Ej.18.A.456 |
0.248 |
|
| 2014 |
Kapur A, Schneider JA, Heard D, Mukherjee S, Schumm P, Oruganti G, Laumann EO. A digital network approach to infer sex behavior in emerging HIV epidemics. Plos One. 9: e101416. PMID 24992340 DOI: 10.1371/Journal.Pone.0101416 |
0.24 |
|
| 2012 |
Simmons Kovacs LA, Mayhew MB, Orlando DA, Jin Y, Li Q, Huang C, Reed SI, Mukherjee S, Haase SB. Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network. Molecular Cell. 45: 669-79. PMID 22306294 DOI: 10.1016/J.Molcel.2011.12.033 |
0.239 |
|
| 2018 |
Barish S, Nuss S, Strunilin I, Bao S, Mukherjee S, Jones CD, Volkan PC. Combinations of DIPs and Dprs control organization of olfactory receptor neuron terminals in Drosophila. Plos Genetics. 14: e1007560. PMID 30102700 DOI: 10.1371/journal.pgen.1007560 |
0.239 |
|
| 2018 |
Silverman JD, Durand HK, Bloom RJ, Mukherjee S, David LA. Correction to: Dynamic linear models guide design and analysis of microbiota studies within artificial human guts. Microbiome. 6: 212. PMID 30482245 DOI: 10.1186/s40168-018-0601-6 |
0.237 |
|
| 2014 |
Fusco D, Barnum TJ, Bruno AE, Luft JR, Snell EH, Mukherjee S, Charbonneau P. Statistical analysis of crystallization database links protein physico-chemical features with crystallization mechanisms. Plos One. 9: e101123. PMID 24988076 DOI: 10.1371/Journal.Pone.0101123 |
0.237 |
|
| 2014 |
Bobrowski O, Mukherjee S. The topology of probability distributions on manifolds Probability Theory and Related Fields. DOI: 10.1007/s00440-014-0556-x |
0.232 |
|
| 2012 |
Tung J, Charpentier MJ, Mukherjee S, Altmann J, Alberts SC. Genetic effects on mating success and partner choice in a social mammal. The American Naturalist. 180: 113-29. PMID 22673655 DOI: 10.1086/665993 |
0.228 |
|
| 2017 |
Silverman JD, Washburne AD, Mukherjee S, David LA. Author response: A phylogenetic transform enhances analysis of compositional microbiota data Elife. DOI: 10.7554/Elife.21887.025 |
0.225 |
|
| 2006 |
Vitek MP, Badea A, Lutz MW, Mukherjee S, Thompson JW, Sundseth S, Colton CA. P3-070: ANALYSIS OF A SPORADIC MOUSE MODEL OF ALZHEIMER'S DISEASE Alzheimer's & Dementia. 14: P1091-P1091. DOI: 10.1016/J.Jalz.2018.06.1426 |
0.223 |
|
| 2002 |
Mukherjee N, Mukherjee S. Predicting signal peptides with support vector machines Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2388: 1-7. DOI: 10.1007/3-540-45665-1_1 |
0.221 |
|
| 2020 |
Silverman JD, Roche K, Mukherjee S, David LA. Naught all zeros in sequence count data are the same. Computational and Structural Biotechnology Journal. 18: 2789-2798. PMID 33101615 DOI: 10.1016/j.csbj.2020.09.014 |
0.205 |
|
| 2023 |
Baek Y, Aquino W, Mukherjee S. Generalized Bayes approach to inverse problems with model misspecification. Inverse Problems. 39. PMID 37990698 DOI: 10.1088/1361-6420/acf51c |
0.198 |
|
| 2011 |
Winter D, Song L, Mukherjee S, Furey T, Crawford G. Analyzing high resolution nucleosome structure by DNase-seq F1000research. 2. DOI: 10.7490/F1000Research.2123.1 |
0.197 |
|
| 2020 |
Berchuck S, Jammal A, Mukherjee S, Somers T, Medeiros FA. Impact of anxiety and depression on progression to glaucoma among glaucoma suspects. The British Journal of Ophthalmology. PMID 32862132 DOI: 10.1136/bjophthalmol-2020-316617 |
0.183 |
|
| 2022 |
Roche KE, Mukherjee S. The accuracy of absolute differential abundance analysis from relative count data. Plos Computational Biology. 18: e1010284. PMID 35816553 DOI: 10.1371/journal.pcbi.1010284 |
0.17 |
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| 2023 |
Shi C, Gottschalk WK, Colton CA, Mukherjee S, Lutz MW. Alzheimer's Disease Protein Relevance Analysis Using Human and Mouse Model Proteomics Data. Frontiers in Systems Biology. 3. PMID 37650081 DOI: 10.3389/fsysb.2023.1085577 |
0.156 |
|
| 2022 |
Tang WS, da Silva GM, Kirveslahti H, Skeens E, Feng B, Sudijono T, Yang KK, Mukherjee S, Rubenstein B, Crawford L. A topological data analytic approach for discovering biophysical signatures in protein dynamics. Plos Computational Biology. 18: e1010045. PMID 35500014 DOI: 10.1371/journal.pcbi.1010045 |
0.148 |
|
| 2021 |
Silverman JD, Bloom RJ, Jiang S, Durand HK, Dallow E, Mukherjee S, David LA. Measuring and mitigating PCR bias in microbiota datasets. Plos Computational Biology. 17: e1009113. PMID 34228723 DOI: 10.1371/journal.pcbi.1009113 |
0.144 |
|
| 2021 |
Bryan J, Mandan A, Kamat G, Gottschalk WK, Badea A, Adams KJ, Thompson JW, Colton CA, Mukherjee S, Lutz MW. Likelihood ratio statistics for gene set enrichment in Alzheimer's disease pathways. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 33480182 DOI: 10.1002/alz.12223 |
0.113 |
|
| 2021 |
Murgas KA, Ma Y, Shahidi LK, Mukherjee S, Allen AS, Shibata D, Ryser MD. A Bayesian Hierarchical Model to Estimate DNA Methylation Conservation in Colorectal Tumors. Bioinformatics (Oxford, England). PMID 34487148 DOI: 10.1093/bioinformatics/btab637 |
0.111 |
|
| 2011 |
Bonnefoi H, Potti A, Delorenzi M, Mauriac L, Campone M, Tubiana-Hulin M, Petit T, Rouanet P, Jassem J, Blot E, Becette V, Farmer P, André S, Acharya CR, Mukherjee S, et al. Retraction--Validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: a substudy of the EORTC 10994/BIG 00-01 clinical trial. The Lancet. Oncology. 12: 116. PMID 21277543 DOI: 10.1016/S1470-2045(11)70011-0 |
0.109 |
|
| 2017 |
Palit SK, Fataf NAA, Md Said MR, Mukherjee S, Banerjee S. Complexity in synchronized and non-synchronized states: A comparative analysis and application The European Physical Journal Special Topics. 226: 2219-2234. DOI: 10.1140/EPJST/E2016-60399-8 |
0.098 |
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| 2023 |
Roche KE, Bjork JR, Dasari MR, Grieneisen L, Jansen DAWAM, Gould TJ, Gesquiere LR, Barreiro LB, Alberts SC, Blekhman R, Gilbert JA, Tung J, Mukherjee S, Archie EA. Universal gut microbial relationships in the gut microbiome of wild baboons. Elife. 12. PMID 37158607 DOI: 10.7554/eLife.83152 |
0.095 |
|
| 2016 |
Banerjee S, Palit SK, Mukherjee S, Ariffin M, Rondoni L. Complexity in congestive heart failure: A time-frequency approach. Chaos (Woodbury, N.Y.). 26: 033105. PMID 27036183 DOI: 10.1063/1.4941374 |
0.095 |
|
| 2021 |
Johnston RA, Vullioud P, Thorley J, Kirveslahti H, Shen L, Mukherjee S, Karner CM, Clutton-Brock T, Tung J. Morphological and genomic shifts in mole-rat 'queens' increase fecundity but reduce skeletal integrity. Elife. 10. PMID 33843584 DOI: 10.7554/eLife.65760 |
0.089 |
|
| 2011 |
Salter KH, Acharya CR, Walters KS, Redman R, Anguiano A, Garman KS, Anders CK, Mukherjee S, Dressman HK, Barry WT, Marcom KP, Olson J, Nevins JR, Potti A. Retraction: An integrated approach to the prediction of chemotherapeutic response in patients with breast cancer. Plos One. 6. PMID 21912632 DOI: 10.1371/annotation/8f94e479-4161-43a0-a28c-4c0460bb89a4 |
0.088 |
|
| 2022 |
Björk JR, Dasari MR, Roche K, Grieneisen L, Gould TJ, Grenier JC, Yotova V, Gottel N, Jansen D, Gesquiere LR, Gordon JB, Learn NH, Wango TL, Mututua RS, Kinyua Warutere J, ... ... Mukherjee S, et al. Synchrony and idiosyncrasy in the gut microbiome of wild baboons. Nature Ecology & Evolution. PMID 35654895 DOI: 10.1038/s41559-022-01773-4 |
0.088 |
|
| 2016 |
Mukherjee S, Chatterjee G, Ghosh M, Das B, Majumder D. Efficacy and Toxicity Assessment of Different Antibody Based Antiangiogenic Drugs by Computational Docking Method. Advances in Bioinformatics. 2016: 7053712. PMID 27047544 DOI: 10.1155/2016/7053712 |
0.086 |
|
| 2023 |
Shi A, Berchuck SI, Jammal AA, Singh G, Hunt S, Roche K, Mukherjee S, Medeiros FA. Identifying risk factors for blindness from glaucoma at first presentation to a tertiary clinic. American Journal of Ophthalmology. PMID 36764425 DOI: 10.1016/j.ajo.2023.02.006 |
0.08 |
|
| 2016 |
Dang TS, Palit SK, Mukherjee S, Hoang TM, Banerjee S. Complexity and synchronization in stochastic chaotic systems European Physical Journal: Special Topics. 225: 159-170. DOI: 10.1140/epjst/e2016-02616-9 |
0.074 |
|
| 2021 |
Mishra R, Behera BK, Mukherjee S, Petru M, Muller M. Axial and Radial Compression Behavior of Composite Rocket Launcher Developed by Robotized Filament Winding: Simulation and Experimental Validation. Polymers. 13. PMID 33572252 DOI: 10.3390/polym13040517 |
0.071 |
|
| 2024 |
Dhar D, Ghosh S, Mukherjee S, Dhara S, Chatterjee J, Das S. Assessment of chitosan-coated zinc cobalt ferrite nanoparticle as a multifunctional theranostic platform facilitating pH-sensitive drug delivery and OCT image contrast enhancement. International Journal of Pharmaceutics. 654: 123999. PMID 38490403 DOI: 10.1016/j.ijpharm.2024.123999 |
0.07 |
|
| 2022 |
He S, Mukherjee S. Exploration of stochastic dynamics and complexity in an epidemic system. The European Physical Journal. Special Topics. 1-7. PMID 36061075 DOI: 10.1140/epjs/s11734-022-00658-8 |
0.069 |
|
| 2013 |
Simmons Kovacs LA, Mayhew MB, Orlando DA, Jin Y, Li Q, Huang C, Reed SI, Mukherjee S, Haase SB. Errata to Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network [Molecular Cell, 45 (2012) 669-679] Molecular Cell. 49: 1177-1179. DOI: 10.1016/j.molcel.2013.03.007 |
0.069 |
|
| 2020 |
Yan B, Prasad PK, Mukherjee S, Saha A, Banerjee S. Dynamical Complexity and Multistability in a Novel Lunar Wake Plasma System Complexity. 2020: 1-11. DOI: 10.1155/2020/5428548 |
0.066 |
|
| 2023 |
Mukherjee S, Pandey AK, Dogra N, Das B, Singh UK, Dhara S. Iodine functionalized 2,5-dimethoxy-2,5-dihydrofuran (DHFI) crosslinked whey protein-derived carbon nanodots (WCND) for antibacterial application. Colloids and Surfaces. B, Biointerfaces. 231: 113543. PMID 37769387 DOI: 10.1016/j.colsurfb.2023.113543 |
0.063 |
|
| 2016 |
Hoang TM, Palit SK, Mukherjee S, Banerjee S. Synchronization and secure communication in time delayed semiconductor laser systems Optik. 127: 10930-10947. DOI: 10.1016/j.ijleo.2016.08.105 |
0.06 |
|
| 2009 |
Mukherjee S, Majumder D. Computational molecular docking assessment of hormone receptor adjuvant drugs: Breast cancer as an example. Pathophysiology : the Official Journal of the International Society For Pathophysiology / Isp. 16: 19-29. PMID 19147336 DOI: 10.1016/j.pathophys.2008.12.001 |
0.058 |
|
| 2024 |
Vijayvergia P, Mukherjee S, Singh L, Dhakad U. Urinary bladder involvement in IgG4-related disease: A case-based review. Modern Rheumatology Case Reports. PMID 38537149 DOI: 10.1093/mrcr/rxae011 |
0.056 |
|
| 2023 |
Mukherjee S, Manna S, Som N, Dhara S. Organic-Inorganic Hybrid Nanocomposites for Nanotheranostics: Special Focus on Preventing Emerging Variants of SARS-COV-2. Biomedical Materials & Devices (New York, N.Y.). 1-15. PMID 37363138 DOI: 10.1007/s44174-023-00077-w |
0.051 |
|
| 2021 |
Mahato CK, Mukherjee S, Kundu M, Vallapure VP, Pramanik A. Asymmetric 1,4-Michael Addition in Aqueous Medium Using Hydrophobic Chiral Organocatalysts. The Journal of Organic Chemistry. PMID 33764066 DOI: 10.1021/acs.joc.1c00124 |
0.051 |
|
| 2022 |
Chandwar K, Mukherjee S, Ekbote D, Kishor K, Dogga P, Dixit J, Kumar P, Dhakad U. Impact of COVID-19 pandemic on rheumatology trainees: an online survey. Rheumatology International. PMID 36255483 DOI: 10.1007/s00296-022-05225-x |
0.042 |
|
| 2021 |
Mukherjee S, Pramanik A. Mild and Expeditious Synthesis of Sulfenyl Enaminones of l-α-Amino Esters and Aryl/Alkyl Amines through NCS-Mediated Sulfenylation. Acs Omega. 6: 33805-33821. PMID 34926928 DOI: 10.1021/acsomega.1c05058 |
0.036 |
|
| 2017 |
Sahoo H, Mukherjee S, Grandhi GS, Selvakumar J, Baidya M. Copper Catalyzed C-N Cross-Coupling Reaction of Aryl Boronic Acids at Room Temperature through Chelation Assistance. The Journal of Organic Chemistry. PMID 28186417 DOI: 10.1021/acs.joc.7b00002 |
0.034 |
|
| 2005 |
Mukherjee S, De S, Ghosh Z, Dasgupta S. A docking interaction study of the effect of critical mutations in ribonuclease a on protein-ligand binding. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. 33: 335-43. PMID 21638595 DOI: 10.1002/bmb.2005.49403305335 |
0.028 |
|
| 2018 |
Mahato CK, Mukherjee S, Kundu M, Pramanik A. Pyrrolidine-oxadiazolone Conjugates as Organocatalysts in Asymmetric Michael Reaction. The Journal of Organic Chemistry. PMID 30577689 DOI: 10.1021/acs.joc.8b02393 |
0.028 |
|
| 2023 |
Biswas J, Khatun N, Bandyopadhyay R, Bhattacharya N, Maitra A, Mukherjee S, Mondal S. Optic nerve sheath diameter measurements using ultrasonography to diagnose raised intracranial pressure in preeclampsia: an observational study. Journal of the Turkish German Gynecological Association. 24: 5-11. PMID 36919381 DOI: 10.4274/jtgga.galenos.2022.2022-3-3 |
0.027 |
|
| 2020 |
Mukherjee S, Das S, Mukherjee S, Ghosh PS, Bhattacharya S. Arterial Blood Gas as a Prognostic Indicator in Patients with Sepsis. Indian Journal of Medical Microbiology. 38: 457-460. PMID 33589203 DOI: 10.4103/ijmm.IJMM_19_478 |
0.024 |
|
| 2020 |
Mukherjee S, Das S, Mukherjee S, Ghosh PS, Bhattacharya S. Arterial blood gas as a prognostic indicator in patients with sepsis. Indian Journal of Medical Microbiology. 38: 457-460. PMID 33154263 DOI: 10.4103/ijmm.IJMM_19_478 |
0.024 |
|
| 2017 |
Fataf NAA, Palit SK, Mukherjee S, Said MRM, Son DH, Banerjee S. Communication scheme using a hyperchaotic semiconductor laser model: Chaos shift key revisited The European Physical Journal Plus. 132. DOI: 10.1140/EPJP/I2017-11786-Y |
0.023 |
|
| 2022 |
Pustake M, Mane S, Ganiyani MA, Mukherjee S, Sayed M, Mithbavkar V, Memon Z, Momin AS, Deshmukh K, Chordia A, Parida S, Johnson A, Warghade S, Varma D, Bhagwat A. Have the COVID-19 pandemic and lockdown affected children's mental health in the long term? A repeated cross-sectional study. Bmj Open. 12: e058609. PMID 35798530 DOI: 10.1136/bmjopen-2021-058609 |
0.013 |
|
| 2019 |
Mukherjee S, Pramanik A. Catalyst-Free One-Pot Three-Component Synthesis of 4-Hydroxy-3-pyrazolylcoumarins in Ethanol at Room Temperature: Enolisable Aroylhydrazones as Efficient Ambident Nucleophile Acs Sustainable Chemistry & Engineering. 8: 403-414. DOI: 10.1021/acssuschemeng.9b05682 |
0.011 |
|
| 2022 |
Mukherjee S, Maurya MK, Kumar P. A rare Scleroderma mimic: Huriez Syndrome. Arthritis & Rheumatology (Hoboken, N.J.). PMID 35606925 DOI: 10.1002/art.42242 |
0.01 |
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