| Year |
Citation |
Score |
| 2022 |
Newcomb ESP, Douma LG, Morris LA, Bloom LB. The Escherichia coli clamp loader rapidly remodels SSB on DNA to load clamps. Nucleic Acids Research. PMID 36511874 DOI: 10.1093/nar/gkac1169 |
0.69 |
|
| 2022 |
Weeks-Pollenz SJ, Ali Y, Morris L, Sutera VA, Dudenhausen EE, Hibnick M, Lovett ST, Bloom LB. Characterization of the Escherichia coli XPD/Rad3 iron-sulfur helicase YoaA in complex with the DNA polymerase III clamp loader subunit chi (χ). The Journal of Biological Chemistry. 102786. PMID 36509145 DOI: 10.1016/j.jbc.2022.102786 |
0.601 |
|
| 2021 |
Sikand A, Jaszczur M, Bloom LB, Woodgate R, Cox MM, Goodman MF. The SOS Error-Prone DNA Polymerase V Mutasome and β-Sliding Clamp Acting in Concert on Undamaged DNA and during Translesion Synthesis. Cells. 10. PMID 34062858 DOI: 10.3390/cells10051083 |
0.536 |
|
| 2021 |
Sutera VA, Weeks SJ, Dudenhausen EE, Baggett HBR, Shaw MC, Brand KA, Glass DJ, Bloom LB, Lovett ST. Alternative complexes formed by the Escherichia coli clamp loader accessory protein HolC (x) with replication protein HolD (ψ) and repair protein YoaA. Dna Repair. 100: 103006. PMID 33582602 DOI: 10.1016/j.dnarep.2020.103006 |
0.576 |
|
| 2020 |
Tondnevis F, Dudenhausen EE, Miller AM, McKenna R, Altschul SF, Bloom LB, Neuwald AF. Deep Analysis of Residue Constraints (DARC): identifying determinants of protein functional specificity. Scientific Reports. 10: 1691. PMID 32015389 DOI: 10.1038/S41598-019-55118-6 |
0.491 |
|
| 2019 |
Andrud K, Xing H, Gabrielsen B, Bloom L, Mahnir V, Lee S, Green BT, Lindstrom J, Kem W. Investigation of the Possible Pharmacologically Active Forms of the Nicotinic Acetylcholine Receptor Agonist Anabaseine. Marine Drugs. 17. PMID 31671780 DOI: 10.3390/Md17110614 |
0.36 |
|
| 2019 |
Sathish S, Morris L, Bloom L. Expression and Characterization of YoaA, a Putative Helicase in Bacteria, Involved in Repairing Blocks to DNA Replication Uf Journal of Undergraduate Research. 20. DOI: 10.32473/UFJUR.V20I3.106284 |
0.565 |
|
| 2017 |
Douma LG, Yu KK, England JK, Levitus M, Bloom LB. Mechanism of opening a sliding clamp. Nucleic Acids Research. 45: 10178-10189. PMID 28973453 DOI: 10.1093/Nar/Gkx665 |
0.539 |
|
| 2017 |
Purohit A, England JK, Douma LG, Tondnevis F, Bloom LB, Levitus M. Electrostatic Interactions at the Dimer Interface Stabilize the E. coli β Sliding Clamp. Biophysical Journal. 113: 794-804. PMID 28834716 DOI: 10.1016/J.Bpj.2017.06.057 |
0.38 |
|
| 2016 |
Tondnevis F, Weiss TM, Matsui T, Bloom LB, Mckenna R. Solution Structure of an "open" E. coli Pol III Clamp Loader Sliding Clamp Complex. Journal of Structural Biology. PMID 26968362 DOI: 10.1016/J.Jsb.2016.03.003 |
0.418 |
|
| 2015 |
Marzahn MR, Hayner JN, Meyer JA, Bloom LB. Kinetic analysis of PCNA clamp binding and release in the clamp loading reaction catalyzed by Saccharomyces cerevisiae replication factor C. Biochimica Et Biophysica Acta. 1854: 31-8. PMID 25450506 DOI: 10.1016/J.Bbapap.2014.09.019 |
0.853 |
|
| 2015 |
Tondnevis F, Gillilan RE, Bloom LB, McKenna R. Solution study of the Escherichia coli DNA polymerase III clamp loader reveals the location of the dynamic ψχ heterodimer Structural Dynamics. 2. DOI: 10.1063/1.4927407 |
0.426 |
|
| 2014 |
Hayner JN, Douma LG, Bloom LB. The interplay of primer-template DNA phosphorylation status and single-stranded DNA binding proteins in directing clamp loaders to the appropriate polarity of DNA. Nucleic Acids Research. 42: 10655-67. PMID 25159615 DOI: 10.1093/nar/gku774 |
0.864 |
|
| 2014 |
Broxson C, Hayner JN, Beckett J, Bloom LB, Tornaletti S. Human AP endonuclease inefficiently removes abasic sites within G4 structures compared to duplex DNA. Nucleic Acids Research. 42: 7708-19. PMID 24848015 DOI: 10.1093/nar/gku417 |
0.849 |
|
| 2014 |
Marzahn MR, Hayner JN, Finkelstein J, O'Donnell M, Bloom LB. The ATP sites of AAA+ clamp loaders work together as a switch to assemble clamps on DNA. The Journal of Biological Chemistry. 289: 5537-48. PMID 24436332 DOI: 10.1074/Jbc.M113.541466 |
0.845 |
|
| 2014 |
Binder JK, Ranjit S, Chakraborty M, Kanno D, Douma L, Bloom L, Levitus M. Single Molecule Studies of DNA Replication Processivity Clamps Biophysical Journal. 106: 229a. DOI: 10.1016/J.Bpj.2013.11.1342 |
0.556 |
|
| 2013 |
Chiraniya A, Finkelstein J, O'Donnell M, Bloom LB. A novel function for the conserved glutamate residue in the walker B motif of replication factor C. Genes. 4: 134-51. PMID 23946885 DOI: 10.3390/Genes4020134 |
0.782 |
|
| 2013 |
Hayner JN, Bloom LB. The β sliding clamp closes around DNA prior to release by the Escherichia coli clamp loader γ complex. The Journal of Biological Chemistry. 288: 1162-70. PMID 23161545 DOI: 10.1074/jbc.M112.406231 |
0.814 |
|
| 2012 |
Bloom LB, Hayner JN. Sliding clamps: an open and shut case? Current Biology : Cb. 22: R157-60. PMID 22401895 DOI: 10.1016/j.cub.2012.01.029 |
0.831 |
|
| 2012 |
Thompson JA, Marzahn MR, O'Donnell M, Bloom LB. Replication factor C is a more effective proliferating cell nuclear antigen (PCNA) opener than the checkpoint clamp loader, Rad24-RFC. The Journal of Biological Chemistry. 287: 2203-9. PMID 22115746 DOI: 10.1074/Jbc.C111.318899 |
0.638 |
|
| 2012 |
Ranjit S, Douma L, Bloom LB, Levitus M. The Stability and Dynamics of E-Coli Beta-Clamp by Single Molecule and Fluorescence Correlation Spectroscopy Biophysical Journal. 102: 179a. DOI: 10.1016/J.Bpj.2011.11.973 |
0.385 |
|
| 2011 |
Paschall CO, Thompson JA, Marzahn MR, Chiraniya A, Hayner JN, O'Donnell M, Robbins AH, McKenna R, Bloom LB. The Escherichia coli clamp loader can actively pry open the β-sliding clamp. The Journal of Biological Chemistry. 286: 42704-14. PMID 21971175 DOI: 10.1074/Jbc.M111.268169 |
0.754 |
|
| 2009 |
Thompson JA, Paschall CO, O'Donnell M, Bloom LB. A slow ATP-induced conformational change limits the rate of DNA binding but not the rate of beta clamp binding by the escherichia coli gamma complex clamp loader. The Journal of Biological Chemistry. 284: 32147-57. PMID 19759003 DOI: 10.1074/jbc.M109.045997 |
0.538 |
|
| 2009 |
Anderson SG, Thompson JA, Paschall CO, O'Donnell M, Bloom LB. Temporal correlation of DNA binding, ATP hydrolysis, and clamp release in the clamp loading reaction catalyzed by the Escherichia coli gamma complex. Biochemistry. 48: 8516-27. PMID 19663416 DOI: 10.1021/bi900912a |
0.605 |
|
| 2009 |
Bloom LB. Loading clamps for DNA replication and repair. Dna Repair. 8: 570-8. PMID 19213612 DOI: 10.1016/j.dnarep.2008.12.014 |
0.643 |
|
| 2009 |
Bloom LB. DNA replication, recombination, and repair Bioinformatics For Systems Biology. 67-87. DOI: 10.1007/978-1-59745-440-7_4 |
0.549 |
|
| 2007 |
Balusu R, Jaiswal AS, Armas ML, Kundu CN, Bloom LB, Narayan S. Structure/function analysis of the interaction of adenomatous polyposis coli with DNA polymerase beta and its implications for base excision repair. Biochemistry. 46: 13961-74. PMID 17999539 DOI: 10.1021/Bi701632E |
0.37 |
|
| 2007 |
Maher RL, Bloom LB. Pre-steady-state kinetic characterization of the AP endonuclease activity of human AP endonuclease 1. The Journal of Biological Chemistry. 282: 30577-85. PMID 17724035 DOI: 10.1074/Jbc.M704341200 |
0.803 |
|
| 2007 |
Anderson SG, Williams CR, O'donnell M, Bloom LB. A function for the psi subunit in loading the Escherichia coli DNA polymerase sliding clamp. The Journal of Biological Chemistry. 282: 7035-45. PMID 17210572 DOI: 10.1074/jbc.M610136200 |
0.602 |
|
| 2007 |
Maher RL, Vallur AC, Feller JA, Bloom LB. Slow base excision by human alkyladenine DNA glycosylase limits the rate of formation of AP sites and AP endonuclease 1 does not stimulate base excision. Dna Repair. 6: 71-81. PMID 17018265 DOI: 10.1016/J.Dnarep.2006.09.001 |
0.816 |
|
| 2006 |
Bloom LB. Dynamics of loading the Escherichia coli DNA polymerase processivity clamp. Critical Reviews in Biochemistry and Molecular Biology. 41: 179-208. PMID 16760017 DOI: 10.1080/10409230600648751 |
0.484 |
|
| 2006 |
Hariharan C, Bloom LB, Helquist SA, Kool ET, Reha-Krantz LJ. Dynamics of nucleotide incorporation: snapshots revealed by 2-aminopurine fluorescence studies. Biochemistry. 45: 2836-44. PMID 16503638 DOI: 10.1021/Bi051644S |
0.493 |
|
| 2006 |
Aksyonov SA, Bittner M, Bloom LB, Reha-Krantz LJ, Gould IR, Hayes MA, Kiernan UA, Niederkofler EE, Pizziconi V, Rivera RS, Williams DJ, Williams P. Multiplexed DNA sequencing-by-synthesis. Analytical Biochemistry. 348: 127-38. PMID 16289447 DOI: 10.1016/J.Ab.2005.10.001 |
0.502 |
|
| 2005 |
Vallur AC, Maher RL, Bloom LB. The efficiency of hypoxanthine excision by alkyladenine DNA glycosylase is altered by changes in nearest neighbor bases. Dna Repair. 4: 1088-98. PMID 15990363 DOI: 10.1016/J.Dnarep.2005.05.008 |
0.828 |
|
| 2004 |
Shaw RW, Feller JA, Bloom LB. Contribution of a conserved phenylalanine residue to the activity of Escherichia coli uracil DNA glycosylase. Dna Repair. 3: 1273-83. PMID 15336623 DOI: 10.1016/J.Dnarep.2004.05.003 |
0.817 |
|
| 2004 |
Bertram JG, Bloom LB, O'Donnell M, Goodman MF. Increased dNTP binding affinity reveals a nonprocessive role for Escherichia coli beta clamp with DNA polymerase IV. The Journal of Biological Chemistry. 279: 33047-50. PMID 15210708 DOI: 10.1074/jbc.C400265200 |
0.631 |
|
| 2004 |
Snyder AK, Williams CR, Johnson A, O'Donnell M, Bloom LB. Mechanism of loading the Escherichia coli DNA polymerase III sliding clamp: II. Uncoupling the beta and DNA binding activities of the gamma complex. The Journal of Biological Chemistry. 279: 4386-93. PMID 14610068 DOI: 10.1074/jbc.M310430200 |
0.57 |
|
| 2004 |
Williams CR, Snyder AK, Kuzmic P, O'Donnell M, Bloom LB. Mechanism of loading the Escherichia coli DNA polymerase III sliding clamp: I. Two distinct activities for individual ATP sites in the gamma complex. The Journal of Biological Chemistry. 279: 4376-85. PMID 14610067 DOI: 10.1074/jbc.M310429200 |
0.584 |
|
| 2003 |
Ason B, Handayani R, Williams CR, Bertram JG, Hingorani MM, O'Donnell M, Goodman MF, Bloom LB. Mechanism of loading the Escherichia coli DNA polymerase III beta sliding clamp on DNA. Bona fide primer/templates preferentially trigger the gamma complex to hydrolyze ATP and load the clamp. The Journal of Biological Chemistry. 278: 10033-40. PMID 12519754 DOI: 10.1074/Jbc.M211741200 |
0.64 |
|
| 2002 |
Jaiswal AS, Bloom LB, Narayan S. Long-patch base excision repair of apurinic/apyrimidinic site DNA is decreased in mouse embryonic fibroblast cell lines treated with plumbagin: involvement of cyclin-dependent kinase inhibitor p21Waf-1/Cip-1. Oncogene. 21: 5912-22. PMID 12185591 DOI: 10.1038/Sj.Onc.1205789 |
0.468 |
|
| 2002 |
Vallur AC, Feller JA, Abner CW, Tran RK, Bloom LB. Effects of hydrogen bonding within a damaged base pair on the activity of wild type and DNA-intercalating mutants of human alkyladenine DNA glycosylase. The Journal of Biological Chemistry. 277: 31673-8. PMID 12077143 DOI: 10.1074/Jbc.M204475200 |
0.809 |
|
| 2001 |
Abner CW, Lau AY, Ellenberger T, Bloom LB. Base excision and DNA binding activities of human alkyladenine DNA glycosylase are sensitive to the base paired with a lesion. The Journal of Biological Chemistry. 276: 13379-87. PMID 11278716 DOI: 10.1074/Jbc.M010641200 |
0.856 |
|
| 2000 |
Bertram JG, Bloom LB, Hingorani MM, Beechem JM, O'Donnell M, Goodman MF. Molecular mechanism and energetics of clamp assembly in Escherichia coli. The role of ATP hydrolysis when gamma complex loads beta on DNA. The Journal of Biological Chemistry. 275: 28413-20. PMID 10874049 DOI: 10.1074/Jbc.M910441199 |
0.535 |
|
| 2000 |
Ason B, Bertram JG, Hingorani MM, Beechem JM, O'Donnell M, Goodman MF, Bloom LB. A model for Escherichia coli DNA polymerase III holoenzyme assembly at primer/template ends. DNA triggers a change in binding specificity of the gamma complex clamp loader. The Journal of Biological Chemistry. 275: 3006-15. PMID 10644772 DOI: 10.1074/Jbc.275.4.3006 |
0.616 |
|
| 1999 |
Hingorani MM, Bloom LB, Goodman MF, O'Donnell M. Division of labor--sequential ATP hydrolysis drives assembly of a DNA polymerase sliding clamp around DNA. The Embo Journal. 18: 5131-44. PMID 10487764 DOI: 10.1093/Emboj/18.18.5131 |
0.513 |
|
| 1998 |
Bertram JG, Bloom LB, Turner J, O'Donnell M, Beechem JM, Goodman MF. Pre-steady state analysis of the assembly of wild type and mutant circular clamps of Escherichia coli DNA polymerase III onto DNA. The Journal of Biological Chemistry. 273: 24564-74. PMID 9733751 DOI: 10.1074/jbc.273.38.24564 |
0.484 |
|
| 1998 |
Reha-Krantz LJ, Marquez LA, Elisseeva E, Baker RP, Bloom LB, Dunford HB, Goodman MF. The proofreading pathway of bacteriophage T4 DNA polymerase. The Journal of Biological Chemistry. 273: 22969-76. PMID 9722519 DOI: 10.1074/jbc.273.36.22969 |
0.559 |
|
| 1998 |
Otto MR, Bloom LB, Goodman MF, Beechem JM. Stopped-flow fluorescence study of precatalytic primer strand base-unstacking transitions in the exonuclease cleft of bacteriophage T4 DNA polymerase. Biochemistry. 37: 10156-63. PMID 9665721 DOI: 10.1021/Bi9800754 |
0.544 |
|
| 1998 |
Beechem JM, Otto MR, Bloom LB, Eritja R, Reha-Krantz LJ, Goodman MF. Exonuclease-polymerase active site partitioning of primer-template DNA strands and equilibrium Mg2+ binding properties of bacteriophage T4 DNA polymerase. Biochemistry. 37: 10144-55. PMID 9665720 DOI: 10.1021/Bi980074B |
0.525 |
|
| 1997 |
Bloom LB, Chen X, Fygenson DK, Turner J, O'Donnell M, Goodman MF. Fidelity of Escherichia coli DNA polymerase III holoenzyme. The effects of beta, gamma complex processivity proteins and epsilon proofreading exonuclease on nucleotide misincorporation efficiencies. The Journal of Biological Chemistry. 272: 27919-30. PMID 9346941 DOI: 10.1074/Jbc.272.44.27919 |
0.379 |
|
| 1996 |
Bloom LB, Turner J, Kelman Z, Beechem JM, O'Donnell M, Goodman MF. Dynamics of loading the beta sliding clamp of DNA polymerase III onto DNA. The Journal of Biological Chemistry. 271: 30699-708. PMID 8940047 DOI: 10.1074/Jbc.271.48.30699 |
0.543 |
|
| 1996 |
Sibghat-Ullah, Gallinari P, Xu YZ, Goodman MF, Bloom LB, Jiricny J, Day RS. Base analog and neighboring base effects on substrate specificity of recombinant human G:T mismatch-specific thymine DNA-glycosylase. Biochemistry. 35: 12926-32. PMID 8841138 DOI: 10.1021/bi961022u |
0.41 |
|
| 1994 |
Goodman MF, Cai H, Bloom LB, Eritja R. Nucleotide insertion and primer extension at abasic template sites in different sequence contexts. Annals of the New York Academy of Sciences. 726: 132-42; discussion 1. PMID 8092671 DOI: 10.1111/j.1749-6632.1994.tb52804.x |
0.303 |
|
| 1994 |
Bloom LB, Otto MR, Eritja R, Reha-Krantz LJ, Goodman MF, Beechem JM. Pre-steady-state kinetic analysis of sequence-dependent nucleotide excision by the 3'-exonuclease activity of bacteriophage T4 DNA polymerase. Biochemistry. 33: 7576-86. PMID 8011623 DOI: 10.1021/Bi00190A010 |
0.384 |
|
| 1993 |
Goodman MF, Creighton S, Bloom LB, Petruska J, Kunkel TA. Biochemical basis of DNA replication fidelity Critical Reviews in Biochemistry and Molecular Biology. 28: 83-126. PMID 8485987 DOI: 10.3109/10409239309086792 |
0.614 |
|
| 1993 |
Bloom LB, Otto MR, Beechem JM, Goodman MF. Influence of 5'-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment. Biochemistry. 32: 11247-58. PMID 8218190 DOI: 10.1021/Bi00092A039 |
0.351 |
|
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