Simon Gravel, Ph.D. - Publications

2009 Cornell University, Ithaca, NY, United States 
Condensed Matter Physics, Computer Science, Mathematics

38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Deblois G, Smith HW, Tam IS, Gravel SP, Caron M, Savage P, Labbé DP, Bégin LR, Tremblay ML, Park M, Bourque G, St-Pierre J, Muller WJ, Giguère V. ERRα mediates metabolic adaptations driving lapatinib resistance in breast cancer. Nature Communications. 7: 12156. PMID 27402251 DOI: 10.1038/Ncomms12156  0.88
2016 Baharian S, Barakatt M, Gignoux CR, Shringarpure S, Errington J, Blot WJ, Bustamante CD, Kenny EE, Williams SM, Aldrich MC, Gravel S. The Great Migration and African-American Genomic Diversity. Plos Genetics. 12: e1006059. PMID 27232753 DOI: 10.1371/Journal.Pgen.1006059  0.88
2016 Gravel S. When is Selection Effective? Genetics. PMID 27010021 DOI: 10.1534/Genetics.115.184630  0.88
2016 Gandin V, Masvidal L, Hulea L, Gravel SP, Cargnello M, McLaughlan S, Cai Y, Balanathan P, Morita M, Rajakumar A, Furic L, Pollak M, Porco JA, St-Pierre J, Pelletier J, et al. nanoCAGE reveals 5' UTR features that define specific modes of translation of functionally related MTOR-sensitive mRNAs. Genome Research. PMID 26984228 DOI: 10.1101/Gr.197566.115  0.88
2016 Audet-Walsh É, Papadopoli DJ, Gravel SP, Yee T, Bridon G, Caron M, Bourque G, Giguère V, St-Pierre J. The PGC-1α/ERRα Axis Represses One-Carbon Metabolism and Promotes Sensitivity to Anti-folate Therapy in Breast Cancer. Cell Reports. PMID 26804918 DOI: 10.1016/J.Celrep.2015.12.086  0.88
2015 Homburger JR, Moreno-Estrada A, Gignoux CR, Nelson D, Sanchez E, Ortiz-Tello P, Pons-Estel BA, Acevedo-Vasquez E, Miranda P, Langefeld CD, Gravel S, Alarcón-Riquelme ME, Bustamante CD. Genomic Insights into the Ancestry and Demographic History of South America. Plos Genetics. 11: e1005602. PMID 26636962 DOI: 10.1371/Journal.Pgen.1005602  0.88
2015 Coffman AJ, Hsieh P, Gravel S, Gutenkunst RN. Computationally efficient composite likelihood statistics for demographic inference. Molecular Biology and Evolution. PMID 26545922 DOI: 10.1093/Molbev/Msv255  0.88
2015 Henn BM, Botigué LR, Bustamante CD, Clark AG, Gravel S. Estimating the mutation load in human genomes. Nature Reviews. Genetics. 16: 333-43. PMID 25963372 DOI: 10.1038/Nrg3931  0.88
2015 Gravel S, Steel M. The existence and abundance of ghost ancestors in biparental populations. Theoretical Population Biology. 101: 47-53. PMID 25703300 DOI: 10.1016/J.Tpb.2015.02.002  0.88
2015 Morita M, Gravel SP, Hulea L, Larsson O, Pollak M, St-Pierre J, Topisirovic I. mTOR coordinates protein synthesis, mitochondrial activity and proliferation. Cell Cycle (Georgetown, Tex.). 14: 473-80. PMID 25590164 DOI: 10.4161/15384101.2014.991572  0.88
2014 Gravel SP, Hulea L, Toban N, Birman E, Blouin MJ, Zakikhani M, Zhao Y, Topisirovic I, St-Pierre J, Pollak M. Serine deprivation enhances antineoplastic activity of biguanides. Cancer Research. 74: 7521-33. PMID 25377470 DOI: 10.1158/0008-5472.Can-14-2643-T  0.88
2014 Perry GH, Foll M, Grenier JC, Patin E, Nédélec Y, Pacis A, Barakatt M, Gravel S, Zhou X, Nsobya SL, Excoffier L, Quintana-Murci L, Dominy NJ, Barreiro LB. Adaptive, convergent origins of the pygmy phenotype in African rainforest hunter-gatherers. Proceedings of the National Academy of Sciences of the United States of America. 111: E3596-603. PMID 25136101 DOI: 10.1073/Pnas.1402875111  0.88
2014 Gravel S. Predicting discovery rates of genomic features. Genetics. 197: 601-10. PMID 24637199 DOI: 10.1534/Genetics.114.162149  0.88
2014 Patin E, Siddle KJ, Laval G, Quach H, Harmant C, Becker N, Froment A, Régnault B, Lemée L, Gravel S, Hombert JM, Van der Veen L, Dominy NJ, Perry GH, Barreiro LB, et al. The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists. Nature Communications. 5: 3163. PMID 24495941 DOI: 10.1038/Ncomms4163  0.88
2013 Carpenter ML, Buenrostro JD, Valdiosera C, Schroeder H, Allentoft ME, Sikora M, Rasmussen M, Gravel S, Guillén S, Nekhrizov G, Leshtakov K, Dimitrova D, Theodossiev N, Pettener D, Luiselli D, et al. Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries. American Journal of Human Genetics. 93: 852-64. PMID 24568772 DOI: 10.1016/J.Ajhg.2013.10.002  0.88
2013 Gravel S, Zakharia F, Moreno-Estrada A, Byrnes JK, Muzzio M, Rodriguez-Flores JL, Kenny EE, Gignoux CR, Maples BK, Guiblet W, Dutil J, Via M, Sandoval K, Bedoya G, et al. Reconstructing Native American migrations from whole-genome and whole-exome data. Plos Genetics. 9: e1004023. PMID 24385924 DOI: 10.1371/Journal.Pgen.1004023  0.88
2013 Mamer O, Gravel SP, Choinière L, Chénard V, St-Pierre J, Avizonis D. The complete targeted profile of the organic acid intermediates of the citric acid cycle using a single stable isotope dilution analysis, sodium borodeuteride reduction and selected ion monitoring GC/MS. Metabolomics : Official Journal of the Metabolomic Society. 9: 1019-1030. PMID 24348278 DOI: 10.1007/S11306-013-0521-1  0.88
2013 Moreno-Estrada A, Gravel S, Zakharia F, McCauley JL, Byrnes JK, Gignoux CR, Ortiz-Tello PA, Martínez RJ, Hedges DJ, Morris RW, Eng C, Sandoval K, Acevedo-Acevedo S, Norman PJ, Layrisse Z, et al. Reconstructing the population genetic history of the Caribbean. Plos Genetics. 9: e1003925. PMID 24244192 DOI: 10.1371/Journal.Pgen.1003925  0.88
2013 Morita M, Gravel SP, Chénard V, Sikström K, Zheng L, Alain T, Gandin V, Avizonis D, Arguello M, Zakaria C, McLaughlan S, Nouet Y, Pause A, Pollak M, Gottlieb E, et al. mTORC1 controls mitochondrial activity and biogenesis through 4E-BP-dependent translational regulation. Cell Metabolism. 18: 698-711. PMID 24206664 DOI: 10.1016/J.Cmet.2013.10.001  0.88
2013 Maples BK, Gravel S, Kenny EE, Bustamante CD. RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. American Journal of Human Genetics. 93: 278-88. PMID 23910464 DOI: 10.1016/J.Ajhg.2013.06.020  0.88
2013 Botigué LR, Henn BM, Gravel S, Maples BK, Gignoux CR, Corona E, Atzmon G, Burns E, Ostrer H, Flores C, Bertranpetit J, Comas D, Bustamante CD. Gene flow from North Africa contributes to differential human genetic diversity in southern Europe. Proceedings of the National Academy of Sciences of the United States of America. 110: 11791-6. PMID 23733930 DOI: 10.1073/Pnas.1306223110  0.88
2012 Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R, McLaughlin SF, Peckham HE, Omberg L, Bormann Chung CA, Stanley S, et al. Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation. American Journal of Human Genetics. 91: 660-71. PMID 23040495 DOI: 10.1016/J.Ajhg.2012.08.025  0.88
2012 Tennessen JA, Bigham AW, O'Connor TD, Fu W, Kenny EE, Gravel S, McGee S, Do R, Liu X, Jun G, Kang HM, Jordan D, Leal SM, Gabriel S, Rieder MJ, et al. Evolution and functional impact of rare coding variation from deep sequencing of human exomes. Science (New York, N.Y.). 337: 64-9. PMID 22604720 DOI: 10.1126/Science.1219240  0.88
2012 Gravel S. Population genetics models of local ancestry. Genetics. 191: 607-19. PMID 22491189 DOI: 10.1534/Genetics.112.139808  0.88
2012 Henn BM, Botigué LR, Gravel S, Wang W, Brisbin A, Byrnes JK, Fadhlaoui-Zid K, Zalloua PA, Moreno-Estrada A, Bertranpetit J, Bustamante CD, Comas D. Genomic ancestry of North Africans supports back-to-Africa migrations. Plos Genetics. 8: e1002397. PMID 22253600 DOI: 10.1371/Journal.Pgen.1002397  0.88
2011 Marth GT, Yu F, Indap AR, Garimella K, Gravel S, Leong WF, Tyler-Smith C, Bainbridge M, Blackwell T, Zheng-Bradley X, Chen Y, Challis D, Clarke L, Ball EV, Cibulskis K, et al. The functional spectrum of low-frequency coding variation. Genome Biology. 12: R84. PMID 21917140 DOI: 10.1186/Gb-2011-12-9-R84  0.88
2011 Gravel S, Henn BM, Gutenkunst RN, Indap AR, Marth GT, Clark AG, Yu F, Gibbs RA, Bustamante CD. Demographic history and rare allele sharing among human populations. Proceedings of the National Academy of Sciences of the United States of America. 108: 11983-8. PMID 21730125 DOI: 10.1073/Pnas.1019276108  0.88
2011 Gravel S, Elser V, Kallus Y. Upper Bound on the Packing Density of Regular Tetrahedra and Octahedra Discrete and Computational Geometry. 46: 799-818. DOI: 10.1007/S00454-010-9304-X  0.88
2010 Kallus Y, Elser V, Gravel S. Method for dense packing discovery. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 056707. PMID 21230619 DOI: 10.1103/Physreve.82.056707  0.88
2010 Henn BM, Gravel S, Moreno-Estrada A, Acevedo-Acevedo S, Bustamante CD. Fine-scale population structure and the era of next-generation sequencing. Human Molecular Genetics. 19: R221-6. PMID 20876616 DOI: 10.1093/Hmg/Ddq403  0.88
2010 Kallus Y, Elser V, Gravel S. Dense periodic packings of tetrahedra with small repeating units Discrete and Computational Geometry. 44: 245-252. DOI: 10.1007/S00454-010-9254-3  0.88
2010 Elser V, Gravel S. Laminating lattices with symmetrical glue Discrete and Computational Geometry. 43: 363-374. DOI: 10.1007/S00454-008-9112-8  0.88
2008 Gravel S, Elser V. Divide and concur: a general approach to constraint satisfaction. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 036706. PMID 18851188 DOI: 10.1103/Physreve.78.036706  0.88
2008 Clément JF, Bibeau-Poirier A, Gravel SP, Grandvaux N, Bonneil E, Thibault P, Meloche S, Servant MJ. Phosphorylation of IRF-3 on Ser 339 generates a hyperactive form of IRF-3 through regulation of dimerization and CBP association. Journal of Virology. 82: 3984-96. PMID 18272581 DOI: 10.1128/Jvi.02526-07  0.88
2007 Gravel S, Ashcroft NW. Nonlinear response theories and effective pair potentials Physical Review B - Condensed Matter and Materials Physics. 76. DOI: 10.1103/Physrevb.76.144103  0.88
2006 Bibeau-Poirier A, Gravel SP, Clément JF, Rolland S, Rodier G, Coulombe P, Hiscott J, Grandvaux N, Meloche S, Servant MJ. Involvement of the IkappaB kinase (IKK)-related kinases tank-binding kinase 1/IKKi and cullin-based ubiquitin ligases in IFN regulatory factor-3 degradation. Journal of Immunology (Baltimore, Md. : 1950). 177: 5059-67. PMID 17015689 DOI: 10.4049/Jimmunol.177.8.5059  0.88
2006 Douillette A, Bibeau-Poirier A, Gravel SP, Clément JF, Chénard V, Moreau P, Servant MJ. The proinflammatory actions of angiotensin II are dependent on p65 phosphorylation by the IkappaB kinase complex. The Journal of Biological Chemistry. 281: 13275-84. PMID 16513650 DOI: 10.1074/Jbc.M512815200  0.88
2005 Gravel SP, Servant MJ. Roles of an IkappaB kinase-related pathway in human cytomegalovirus-infected vascular smooth muscle cells: a molecular link in pathogen-induced proatherosclerotic conditions. The Journal of Biological Chemistry. 280: 7477-86. PMID 15619605 DOI: 10.1074/Jbc.M410392200  0.88
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