| Year |
Citation |
Score |
| 2020 |
Ghosh S, Lawless MJ, Brubaker HJ, Singewald K, Kurpiewski MR, Jen-Jacobson L, Saxena S. Cu2+-based distance measurements by pulsed EPR provide distance constraints for DNA backbone conformations in solution. Nucleic Acids Research. PMID 32095832 DOI: 10.1093/Nar/Gkaa133 |
0.445 |
|
| 2018 |
Sinha K, Sangani S, Rule G, Jen-Jacobson L. Backbone assignments and ILV methyl assignments for EcoRV bound to 16-mer double stranded DNA (GCAAAGATATCTTTCG) without Lu3+ Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr25701 |
0.5 |
|
| 2016 |
Sinha K, Sangani SS, Kehr AD, Rule GS, Jen-Jacobson L. Metal Ion Binding at the Catalytic Site Induces Widely Distributed Changes in a Sequence Specific Protein-DNA Complex. Biochemistry. PMID 27786446 DOI: 10.1021/Acs.Biochem.6B00919 |
0.49 |
|
| 2015 |
Ghindilis AL, Smith MW, Simon HM, Seoudi IA, Yazvenko NS, Murray IA, Fu X, Smith K, Jen-Jacobson L, Xu SY. Restriction Cascade Exponential Amplification (RCEA) assay with an attomolar detection limit: a novel, highly specific, isothermal alternative to qPCR. Scientific Reports. 5: 7737. PMID 25583452 DOI: 10.1038/Srep07737 |
0.412 |
|
| 2014 |
Ji M, Tan L, Jen-Jacobson L, Saxena S. Insights into copper coordination in the EcoRI-DNA complex by ESR spectroscopy. Molecular Physics. 112: 3173-3182. PMID 25750461 DOI: 10.1080/00268976.2014.934313 |
0.478 |
|
| 2014 |
Sapienza PJ, Niu T, Kurpiewski MR, Grigorescu A, Jen-Jacobson L. Thermodynamic and structural basis for relaxation of specificity in protein-DNA recognition. Journal of Molecular Biology. 426: 84-104. PMID 24041571 DOI: 10.1016/J.Jmb.2013.09.005 |
0.491 |
|
| 2014 |
Trakselis MA, Bauer RJ, Lin H, Jen-Jacobson L. Complex Temperature Dependent Equilibria Dictate DNA Polymerase Exchange Processes during Synthesis Biophysical Journal. 106: 274a. DOI: 10.1016/J.Bpj.2013.11.1603 |
0.536 |
|
| 2013 |
Sinha K, Jen-Jacobson L, Rule GS. Divide and conquer is always best: sensitivity of methyl correlation experiments. Journal of Biomolecular Nmr. 56: 331-5. PMID 23771591 DOI: 10.1007/S10858-013-9751-9 |
0.328 |
|
| 2013 |
Ruthstein S, Ji M, Mehta P, Jen-Jacobson L, Saxena S. Sensitive Cu2+-Cu2+ distance measurements in a protein-DNA complex by double-quantum coherence ESR. The Journal of Physical Chemistry. B. 117: 6227-30. PMID 23631829 DOI: 10.1021/Jp4037149 |
0.371 |
|
| 2012 |
Lin HK, Chase SF, Laue TM, Jen-Jacobson L, Trakselis MA. Differential temperature-dependent multimeric assemblies of replication and repair polymerases on DNA increase processivity. Biochemistry. 51: 7367-82. PMID 22906116 DOI: 10.1021/Bi300956T |
0.541 |
|
| 2012 |
Yang Z, Kurpiewski MR, Ji M, Townsend JE, Mehta P, Jen-Jacobson L, Saxena S. ESR spectroscopy identifies inhibitory Cu2+ sites in a DNA-modifying enzyme to reveal determinants of catalytic specificity. Proceedings of the National Academy of Sciences of the United States of America. 109: E993-1000. PMID 22493217 DOI: 10.1073/Pnas.1200733109 |
0.488 |
|
| 2012 |
Sarver JL, Townsend JE, Rajapakse G, Jen-Jacobson L, Saxena S. Simulating the dynamics and orientations of spin-labeled side chains in a protein-DNA complex. The Journal of Physical Chemistry. B. 116: 4024-33. PMID 22404310 DOI: 10.1021/Jp211094N |
0.389 |
|
| 2011 |
Sinha K, Jen-Jacobson L, Rule GS. Specific labeling of threonine methyl groups for NMR studies of protein-nucleic acid complexes. Biochemistry. 50: 10189-91. PMID 22039762 DOI: 10.1021/Bi201496D |
0.378 |
|
| 2011 |
Hancock SP, Hiller DA, Perona JJ, Jen-Jacobson L. The energetic contribution of induced electrostatic asymmetry to DNA bending by a site-specific protein. Journal of Molecular Biology. 406: 285-312. PMID 21167173 DOI: 10.1016/J.Jmb.2010.12.012 |
0.579 |
|
| 2011 |
Sarver J, Stone K, Townsend J, Sapienza P, Jen-Jacobson L, Saxena S. In the Arms of EcoRI - probing the Binding Specificity of the Restriction Endonuclease Using Electron Spin Resonance Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.995 |
0.484 |
|
| 2011 |
Ji M, Yang Z, Mehta P, Jen-Jacobson L, Saxena S. Insights on Copper Coordination and Reactivity of Endonuclease EcoRI by ESR Spectroscopy and Modeling Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.594 |
0.354 |
|
| 2010 |
Dylla-Spears R, Townsend JE, Jen-Jacobson L, Sohn LL, Muller SJ. Single-molecule sequence detection via microfluidic planar extensional flow at a stagnation point. Lab On a Chip. 10: 1543-9. PMID 20358051 DOI: 10.1039/B926847B |
0.499 |
|
| 2009 |
Dylla-Spears R, Townsend JE, Sohn LL, Jen-Jacobson L, Muller SJ. Fluorescent marker for direct detection of specific dsDNA sequences. Analytical Chemistry. 81: 10049-54. PMID 19908852 DOI: 10.1021/Ac9019895 |
0.461 |
|
| 2009 |
Mikheikin AL, Lin HK, Mehta P, Jen-Jacobson L, Trakselis MA. A trimeric DNA polymerase complex increases the native replication processivity. Nucleic Acids Research. 37: 7194-205. PMID 19773426 DOI: 10.1093/Nar/Gkp767 |
0.574 |
|
| 2009 |
Townsend JE, Stone K, Yang Z, Sarver J, Saxena S, Jen-Jacobson L. The Enfolding Arms of EcoRI Endonuclease as Probed by ESR Experiments Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.222 |
0.57 |
|
| 2008 |
Stone KM, Townsend JE, Sarver J, Sapienza PJ, Saxena S, Jen-Jacobson L. Electron spin resonance shows common structural features for different classes of EcoRI-DNA complexes. Angewandte Chemie (International Ed. in English). 47: 10192-4. PMID 19021169 DOI: 10.1002/Anie.200803588 |
0.412 |
|
| 2008 |
VanderVeen LA, Harris TM, Jen-Jacobson L, Marnett LJ. Formation of DNA-protein cross-links between gamma-hydroxypropanodeoxyguanosine and EcoRI. Chemical Research in Toxicology. 21: 1733-8. PMID 18690724 DOI: 10.1021/Tx800092G |
0.389 |
|
| 2007 |
Sapienza PJ, Rosenberg JM, Jen-Jacobson L. Structural and thermodynamic basis for enhanced DNA binding by a promiscuous mutant EcoRI endonuclease. Structure (London, England : 1993). 15: 1368-82. PMID 17997963 DOI: 10.1016/J.Str.2007.09.014 |
0.442 |
|
| 2005 |
Sapienza PJ, Dela Torre CA, McCoy WH, Jana SV, Jen-Jacobson L. Thermodynamic and kinetic basis for the relaxed DNA sequence specificity of "promiscuous" mutant EcoRI endonucleases. Journal of Molecular Biology. 348: 307-24. PMID 15811370 DOI: 10.1016/J.Jmb.2005.02.051 |
0.517 |
|
| 2004 |
Kurpiewski MR, Engler LE, Wozniak LA, Kobylanska A, Koziolkiewicz M, Stec WJ, Jen-Jacobson L. Mechanisms of coupling between DNA recognition specificity and catalysis in EcoRI endonuclease. Structure (London, England : 1993). 12: 1775-88. PMID 15458627 DOI: 10.1016/J.Str.2004.07.016 |
0.53 |
|
| 2004 |
Shuttleworth G, Fogg MJ, Kurpiewski MR, Jen-Jacobson L, Connolly BA. Recognition of the pro-mutagenic base uracil by family B DNA polymerases from archaea. Journal of Molecular Biology. 337: 621-34. PMID 15019782 DOI: 10.1016/J.Jmb.2004.01.021 |
0.548 |
|
| 2001 |
Engler LE, Sapienza P, Dorner LF, Kucera R, Schildkraut I, Jen-Jacobson L. The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC Journal of Molecular Biology. 307: 619-636. PMID 11254386 DOI: 10.1006/Jmbi.2000.4428 |
0.538 |
|
| 2001 |
Watrob H, Liu W, Chen Y, Bartlett SG, Jen-Jacobson L, Barkley MD. Solution conformation of EcoRI restriction endonuclease changes upon binding of cognate DNA and Mg2+ cofactor Biochemistry. 40: 683-692. PMID 11170385 DOI: 10.1021/bi002055j |
0.441 |
|
| 2000 |
Jen-Jacobson L, Engler LE, Jacobson LA. Structural and thermodynamic strategies for site-specific DNA binding proteins Structure. 8: 1015-1023. PMID 11080623 DOI: 10.1016/S0969-2126(00)00501-3 |
0.587 |
|
| 2000 |
Jen-Jacobson L, Engler LE, Ames JT, Kurpiewski MR, Grigorescu A. Thermodynamic Parameters of Specific and Nonspecific Protein-DNA Binding Supramolecular Chemistry. 12: 143-160. DOI: 10.1080/10610270008027446 |
0.556 |
|
| 1999 |
Malygin EG, Zinoviev VV, Petrov NA, Evdokimov AA, Jen-Jacobson L, Kossykh VG, Hattman S. Effect of base analog substitutions in the specific GATC site on binding and methylation of oligonucleotide duplexes by the bacteriophage T4 Dam DNA-[N6-adenine] methyltransferase Nucleic Acids Research. 27: 1135-1144. PMID 9927748 DOI: 10.1093/Nar/27.4.1135 |
0.454 |
|
| 1998 |
Liu W, Chen Y, Watrob H, Bartlett SG, Jen-Jacobson L, Barkley MD. N-termini of EcoRI restriction endonuclease dimer are in close proximity on the protein surface. Biochemistry. 37: 15457-65. PMID 9799508 DOI: 10.1021/Bi980557F |
0.42 |
|
| 1997 |
Jen-Jacobson L. Protein-DNA recognition complexes: Conservation of structure and binding energy in the transition state Biopolymers - Nucleic Acid Sciences Section. 44: 153-180. PMID 9354759 DOI: 10.1002/(Sici)1097-0282(1997)44:2<153::Aid-Bip4>3.0.Co;2-U |
0.563 |
|
| 1997 |
Engler LE, Welch KK, Jen-Jacobson L. Specific binding by EcoRV endonuclease to its DNA recognition site GATATC Journal of Molecular Biology. 269: 82-101. PMID 9193002 DOI: 10.1006/Jmbi.1997.1027 |
0.487 |
|
| 1996 |
Kurpiewski MR, Koziolkiewicz M, Wilk A, Stec WJ, Jen-Jacobson L. Chiral phosphorothioates as probes of protein interactions with individual DNA phosphoryl oxygens: Essential interactions of EcoRI endonuclease with the phosphate at pGAATTC Biochemistry. 35: 8846-8854. PMID 8688420 DOI: 10.1021/Bi960261E |
0.427 |
|
| 1996 |
Jen-Jacobson L, Engler LE, Lesser DR, Kurpiewski MR, Yee C, McVerry B. Structural adaptations in the interaction of EcoRI endonuclease with methylated GAATTC sites Embo Journal. 15: 2870-2882. PMID 8654385 |
0.471 |
|
| 1995 |
Jen-Jacobson L. Structural-Perturbation approaches to thermodynamics of site-specific protein-DNA interactions Methods in Enzymology. 259: 305-344. PMID 8538460 DOI: 10.1016/0076-6879(95)59050-1 |
0.525 |
|
| 1993 |
Lesser DR, Kurpiewski MR, Waters T, Connolly BA, Jen-Jacobson L. Facilitated distortion of the DNA site enhances EcoRI endonuclease-DNA recognition Proceedings of the National Academy of Sciences of the United States of America. 90: 7548-7552. PMID 8356054 DOI: 10.1073/Pnas.90.16.7548 |
0.496 |
|
| 1992 |
Lesser DR, Grajkowski A, Kurpiewski MR, Koziolkiewicz M, Stec WJ, Jen-Jacobson L. Stereoselective interaction with chiral phosphorothioates at the central DNA kink of the EcoRI endonuclease-GAATTC complex Journal of Biological Chemistry. 267: 24810-24818. PMID 1447218 |
0.463 |
|
| 1990 |
Lesser DR, Kurpiewski MR, Jen-Jacobson L. The energetic basis of specificity in the Eco RI endonuclease-DNA interaction Science. 250: 776-786. PMID 2237428 DOI: 10.1126/Science.2237428 |
0.539 |
|
| 1988 |
Becker MM, Lesser D, Kurpiewski M, Baranger A, Jen-Jacobson L. 'Ultraviolet footprinting' accurately maps sequence-specific contacts and DNA kinking in the EcoRI endonuclease-DNA complex Proceedings of the National Academy of Sciences of the United States of America. 85: 6247-6251. PMID 2842760 DOI: 10.1073/Pnas.85.17.6247 |
0.562 |
|
| 1986 |
Jen-Jacobson L, Lesser D, Kurpiewski M. The enfolding arms of EcoRI endonuclease: Role in DNA binding and cleavage Cell. 45: 619-629. PMID 3011275 DOI: 10.1016/0092-8674(86)90294-1 |
0.548 |
|
| 1984 |
Grable J, Frederick CA, Samudzi C, Jen-Jacobson L, Lesser D, Greene P, Boyer HW, Itakura K, Rosenberg JM. Two-fold symmetry of crystalline DNA-EcoRI endonuclease recognition complexes. Journal of Biomolecular Structure & Dynamics. 1: 1149-60. PMID 6400815 DOI: 10.1080/07391102.1984.10507509 |
0.505 |
|
| 1984 |
Frederick CA, Grable J, Melia M, Samudzi C, Jen-Jacobson L, Wang BC, Greene P, Boyer HW, Rosenberg JM. Kinked DNA in crystalline complex with EcoRI endonuclease. Nature. 309: 327-31. PMID 6328307 DOI: 10.1038/309327A0 |
0.565 |
|
| 1983 |
Jen-Jacobson L, Kurpiewski M, Lesser D, Grable J, Boyer HW, Rosenberg JM, Greene PJ. Coordinate ion pair formation between EcoRI endonuclease and DNA. The Journal of Biological Chemistry. 258: 14638-46. PMID 6315732 |
0.416 |
|
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