Year |
Citation |
Score |
2021 |
Katzir I, Adler M, Karin O, Mendelsohn-Cohen N, Mayo A, Alon U. Senescent cells and the incidence of age-related diseases. Aging Cell. e13314. PMID 33559235 DOI: 10.1111/acel.13314 |
0.68 |
|
2021 |
Tendler A, Bar A, Mendelsohn-Cohen N, Karin O, Korem Kohanim Y, Maimon L, Milo T, Raz M, Mayo A, Tanay A, Alon U. Hormone seasonality in medical records suggests circannual endocrine circuits. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33531344 DOI: 10.1073/pnas.2003926118 |
0.68 |
|
2020 |
Shimshoni E, Adir I, Afik R, Solomonov I, Shenoy A, Adler M, Puricelli L, Sabino F, Savickas S, Mouhadeb O, Gluck N, Fishman S, Werner L, Salame TM, Shouval DS, ... ... Alon U, et al. Distinct extracellular-matrix remodeling events precede symptoms of inflammation. Matrix Biology : Journal of the International Society For Matrix Biology. PMID 33246101 DOI: 10.1016/j.matbio.2020.11.001 |
0.68 |
|
2020 |
Maimon L, Milo T, Moyal RS, Mayo A, Danon T, Bren A, Alon U. Timescales of Human Hair Cortisol Dynamics. Iscience. 23: 101501. PMID 32911331 DOI: 10.1016/j.isci.2020.101501 |
0.68 |
|
2020 |
Korem Kohanim Y, Tendler A, Mayo A, Friedman N, Alon U. Endocrine Autoimmune Disease as a Fragility of Immune Surveillance against Hypersecreting Mutants. Immunity. 52: 872-884.e5. PMID 32433950 DOI: 10.1016/j.immuni.2020.04.022 |
0.68 |
|
2020 |
Adler M, Mayo A, Zhou X, Franklin RA, Meizlish ML, Medzhitov R, Kallenberger SM, Alon U. Principles of Cell Circuits for Tissue Repair and Fibrosis. Iscience. 23: 100841. PMID 32058955 DOI: 10.1016/j.isci.2020.100841 |
0.68 |
|
2019 |
Tendler A, Zimmer A, Mayo A, Alon U. Noise-precision tradeoff in predicting combinations of mutations and drugs. Plos Computational Biology. 15: e1006956. PMID 31116755 DOI: 10.1371/journal.pcbi.1006956 |
0.68 |
|
2019 |
Adler M, Korem Kohanim Y, Tendler A, Mayo A, Alon U. Continuum of Gene-Expression Profiles Provides Spatial Division of Labor within a Differentiated Cell Type. Cell Systems. PMID 30638811 DOI: 10.1016/j.cels.2018.12.008 |
0.68 |
|
2019 |
Hausser J, Mayo A, Keren L, Alon U. Central dogma rates and the trade-off between precision and economy in gene expression. Nature Communications. 10: 68. PMID 30622246 DOI: 10.1038/s41467-018-07391-8 |
0.68 |
|
2018 |
Korem Kohanim Y, Levi D, Jona G, Towbin BD, Bren A, Alon U. A Bacterial Growth Law out of Steady State. Cell Reports. 23: 2891-2900. PMID 29874577 DOI: 10.1016/j.celrep.2018.05.007 |
0.36 |
|
2018 |
Sheftel H, Szekely P, Mayo A, Sella G, Alon U. Evolutionary trade-offs and the structure of polymorphisms. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 29632259 DOI: 10.1098/rstb.2017.0105 |
0.68 |
|
2018 |
Liron Y, Raindel N, Alon U. Dramatic action: A theater-based paradigm for analyzing human interactions. Plos One. 13: e0193404. PMID 29518101 DOI: 10.1371/journal.pone.0193404 |
0.56 |
|
2018 |
Adler M, Mayo A, Zhou X, Franklin RA, Jacox JB, Medzhitov R, Alon U. Endocytosis as a stabilizing mechanism for tissue homeostasis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29429964 DOI: 10.1073/pnas.1714377115 |
0.68 |
|
2018 |
Zhou X, Franklin RA, Adler M, Jacox JB, Bailis W, Shyer JA, Flavell RA, Mayo A, Alon U, Medzhitov R. Circuit Design Features of a Stable Two-Cell System. Cell. PMID 29398113 DOI: 10.1016/j.cell.2018.01.015 |
0.68 |
|
2017 |
Drayman N, Karin O, Mayo A, Danon T, Shapira L, Rafael D, Zimmer A, Bren A, Kobiler O, Alon U. Dynamic Proteomics of Herpes Simplex Virus Infection. Mbio. 8. PMID 29114028 DOI: 10.1128/mBio.01612-17 |
0.68 |
|
2017 |
Zimmer A, Tendler A, Katzir I, Mayo A, Alon U. Prediction of drug cocktail effects when the number of measurements is limited. Plos Biology. 15: e2002518. PMID 29073201 DOI: 10.1371/journal.pbio.2002518 |
0.68 |
|
2017 |
Zimmer A, Amar-Farkash S, Danon T, Alon U. Dynamic proteomics reveals bimodal protein dynamics of cancer cells in response to HSP90 inhibitor. Bmc Systems Biology. 11: 33. PMID 28270142 DOI: 10.1186/s12918-017-0410-8 |
0.56 |
|
2017 |
Gaziv G, Noy L, Liron Y, Alon U. A reduced-dimensionality approach to uncovering dyadic modes of body motion in conversations. Plos One. 12: e0170786. PMID 28141861 DOI: 10.1371/journal.pone.0170786 |
0.56 |
|
2017 |
Towbin BD, Korem Y, Bren A, Doron S, Sorek R, Alon U. Optimality and sub-optimality in a bacterial growth law. Nature Communications. 8: 14123. PMID 28102224 DOI: 10.1038/ncomms14123 |
0.36 |
|
2017 |
Adler M, Szekely P, Mayo A, Alon U. Optimal Regulatory Circuit Topologies for Fold-Change Detection. Cell Systems. PMID 28089543 DOI: 10.1016/j.cels.2016.12.009 |
0.68 |
|
2016 |
Dahan A, Noy L, Hart Y, Mayo A, Alon U. Exit from Synchrony in Joint Improvised Motion. Plos One. 11: e0160747. PMID 27711185 DOI: 10.1371/journal.pone.0160747 |
0.68 |
|
2016 |
Zimmer A, Katzir I, Dekel E, Mayo AE, Alon U. Prediction of multidimensional drug dose responses based on measurements of drug pairs. Proceedings of the National Academy of Sciences of the United States of America. PMID 27562164 DOI: 10.1073/pnas.1606301113 |
0.76 |
|
2016 |
Keren L, Hausser J, Lotan-Pompan M, Vainberg Slutskin I, Alisar H, Kaminski S, Weinberger A, Alon U, Milo R, Segal E. Massively Parallel Interrogation of the Effects of Gene Expression Levels on Fitness. Cell. PMID 27545349 DOI: 10.1016/j.cell.2016.07.024 |
0.76 |
|
2016 |
Bren A, Park JO, Towbin BD, Dekel E, Rabinowitz JD, Alon U. Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP. Scientific Reports. 6: 24834. PMID 27109914 DOI: 10.1038/srep24834 |
0.76 |
|
2015 |
Szekely P, Korem Y, Moran U, Mayo A, Alon U. The Mass-Longevity Triangle: Pareto Optimality and the Geometry of Life-History Trait Space. Plos Computational Biology. 11: e1004524. PMID 26465336 DOI: 10.1371/journal.pcbi.1004524 |
0.76 |
|
2015 |
Korem Y, Szekely P, Hart Y, Sheftel H, Hausser J, Mayo A, Rothenberg ME, Kalisky T, Alon U. Geometry of the Gene Expression Space of Individual Cells. Plos Computational Biology. 11: e1004224. PMID 26161936 DOI: 10.1371/journal.pcbi.1004224 |
0.76 |
|
2015 |
Tendler A, Mayo A, Alon U. Evolutionary tradeoffs, Pareto optimality and the morphology of ammonite shells. Bmc Systems Biology. 9: 12. PMID 25884468 DOI: 10.1186/s12918-015-0149-z |
0.68 |
|
2015 |
Noy L, Alon U, Friedman J. Corrective jitter motion shows similar individual frequencies for the arm and the finger. Experimental Brain Research. 233: 1307-20. PMID 25630905 DOI: 10.1007/s00221-015-4204-1 |
0.76 |
|
2015 |
Hart Y, Sheftel H, Hausser J, Szekely P, Ben-Moshe NB, Korem Y, Tendler A, Mayo AE, Alon U. Inferring biological tasks using Pareto analysis of high-dimensional data. Nature Methods. 12: 233-5, 3 p following. PMID 25622107 DOI: 10.1038/nmeth.3254 |
0.76 |
|
2014 |
Aidelberg G, Towbin BD, Rothschild D, Dekel E, Bren A, Alon U. Hierarchy of non-glucose sugars in Escherichia coli. Bmc Systems Biology. 8: 133. PMID 25539838 DOI: 10.1186/s12918-014-0133-z |
0.76 |
|
2014 |
Adler M, Mayo A, Alon U. Logarithmic and power law input-output relations in sensory systems with fold-change detection. Plos Computational Biology. 10: e1003781. PMID 25121598 DOI: 10.1371/journal.pcbi.1003781 |
0.76 |
|
2014 |
Rothschild D, Dekel E, Hausser J, Bren A, Aidelberg G, Szekely P, Alon U. Linear superposition and prediction of bacterial promoter activity dynamics in complex conditions. Plos Computational Biology. 10: e1003602. PMID 24809350 DOI: 10.1371/journal.pcbi.1003602 |
0.76 |
|
2014 |
Dasgupta T, Croll DH, Owen JA, Vander Heiden MG, Locasale JW, Alon U, Cantley LC, Gunawardena J. A fundamental trade-off in covalent switching and its circumvention by enzyme bifunctionality in glucose homeostasis. The Journal of Biological Chemistry. 289: 13010-25. PMID 24634222 DOI: 10.1074/jbc.M113.546515 |
0.76 |
|
2014 |
Farkash-Amar S, Zimmer A, Eden E, Cohen A, Geva-Zatorsky N, Cohen L, Milo R, Sigal A, Danon T, Alon U. Noise genetics: inferring protein function by correlating phenotype with protein levels and localization in individual human cells. Plos Genetics. 10: e1004176. PMID 24603725 DOI: 10.1371/journal.pgen.1004176 |
0.76 |
|
2014 |
Hart Y, Noy L, Feniger-Schaal R, Mayo AE, Alon U. Individuality and togetherness in joint improvised motion. Plos One. 9: e87213. PMID 24533054 DOI: 10.1371/journal.pone.0087213 |
0.76 |
|
2013 |
Madar D, Dekel E, Bren A, Zimmer A, Porat Z, Alon U. Promoter activity dynamics in the lag phase of Escherichia coli. Bmc Systems Biology. 7: 136. PMID 24378036 DOI: 10.1186/1752-0509-7-136 |
0.76 |
|
2013 |
Keren L, Zackay O, Lotan-Pompan M, Barenholz U, Dekel E, Sasson V, Aidelberg G, Bren A, Zeevi D, Weinberger A, Alon U, Milo R, Segal E. Promoters maintain their relative activity levels under different growth conditions. Molecular Systems Biology. 9: 701. PMID 24169404 DOI: 10.1038/msb.2013.59 |
0.76 |
|
2013 |
Kavanagh KD, Shoval O, Winslow BB, Alon U, Leary BP, Kan A, Tabin CJ. Developmental bias in the evolution of phalanges. Proceedings of the National Academy of Sciences of the United States of America. 110: 18190-5. PMID 24151335 DOI: 10.1073/pnas.1315213110 |
0.76 |
|
2013 |
Szekely P, Sheftel H, Mayo A, Alon U. Evolutionary tradeoffs between economy and effectiveness in biological homeostasis systems. Plos Computational Biology. 9: e1003163. PMID 23950698 DOI: 10.1371/journal.pcbi.1003163 |
0.76 |
|
2013 |
Mitarai N, Alon U, Jensen MH. Entrainment of noise-induced and limit cycle oscillators under weak noise. Chaos (Woodbury, N.Y.). 23: 023125. PMID 23822490 DOI: 10.1063/1.4808253 |
0.76 |
|
2013 |
Sheftel H, Shoval O, Mayo A, Alon U. The geometry of the Pareto front in biological phenotype space. Ecology and Evolution. 3: 1471-83. PMID 23789060 DOI: 10.1002/ece3.528 |
0.68 |
|
2013 |
Bren A, Hart Y, Dekel E, Koster D, Alon U. The last generation of bacterial growth in limiting nutrient. Bmc Systems Biology. 7: 27. PMID 23531321 DOI: 10.1186/1752-0509-7-27 |
0.76 |
|
2013 |
Shoval O, Sheftel H, Shinar G, Hart Y, Ramote O, Mayo A, Dekel E, Kavanagh K, Alon U. Response to comment on "Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space". Science (New York, N.Y.). 339: 757. PMID 23413339 DOI: 10.1126/science.1228921 |
0.76 |
|
2012 |
Farkash-Amar S, Eden E, Cohen A, Geva-Zatorsky N, Cohen L, Milo R, Sigal A, Danon T, Alon U. Dynamic proteomics of human protein level and localization across the cell cycle. Plos One. 7: e48722. PMID 23144944 DOI: 10.1371/journal.pone.0048722 |
0.76 |
|
2012 |
Koster DA, Mayo A, Bren A, Alon U. Surface growth of a motile bacterial population resembles growth in a chemostat. Journal of Molecular Biology. 424: 180-91. PMID 23000812 DOI: 10.1016/j.jmb.2012.09.005 |
0.68 |
|
2012 |
Sasson V, Shachrai I, Bren A, Dekel E, Alon U. Mode of regulation and the insulation of bacterial gene expression. Molecular Cell. 46: 399-407. PMID 22633488 DOI: 10.1016/j.molcel.2012.04.032 |
0.76 |
|
2012 |
Shoval O, Sheftel H, Shinar G, Hart Y, Ramote O, Mayo A, Dekel E, Kavanagh K, Alon U. Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space. Science (New York, N.Y.). 336: 1157-60. PMID 22539553 DOI: 10.1126/science.1217405 |
0.76 |
|
2012 |
Geva-Zatorsky N, Issaeva I, Mayo A, Cohen A, Dekel E, Danon T, Cohen L, Liron Y, Alon U, Eden E. Using bleach-chase to measure protein half-lives in living cells. Nature Protocols. 7: 801-11. PMID 22461069 DOI: 10.1038/nprot.2012.028 |
0.76 |
|
2012 |
Silander OK, Nikolic N, Zaslaver A, Bren A, Kikoin I, Alon U, Ackermann M. A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli. Plos Genetics. 8: e1002443. PMID 22275871 DOI: 10.1371/journal.pgen.1002443 |
0.76 |
|
2011 |
Noy L, Dekel E, Alon U. The mirror game as a paradigm for studying the dynamics of two people improvising motion together. Proceedings of the National Academy of Sciences of the United States of America. 108: 20947-52. PMID 22160696 DOI: 10.1073/pnas.1108155108 |
0.76 |
|
2011 |
Hart Y, Mayo AE, Milo R, Alon U. Robust control of PEP formation rate in the carbon fixation pathway of C(4) plants by a bi-functional enzyme. Bmc Systems Biology. 5: 171. PMID 22024416 DOI: 10.1186/1752-0509-5-171 |
0.56 |
|
2011 |
Madar D, Dekel E, Bren A, Alon U. Negative auto-regulation increases the input dynamic-range of the arabinose system of Escherichia coli. Bmc Systems Biology. 5: 111. PMID 21749723 DOI: 10.1186/1752-0509-5-111 |
0.76 |
|
2011 |
Kirschner MW, Shapiro L, McAdams H, Almouzni G, Sharp PA, Young RA, Alon U. Fifty years after Jacob and Monod: what are the unanswered questions in molecular biology? Molecular Cell. 42: 403-4. PMID 21748867 |
0.76 |
|
2011 |
Eden E, Geva-Zatorsky N, Issaeva I, Cohen A, Dekel E, Danon T, Cohen L, Mayo A, Alon U. Proteome half-life dynamics in living human cells. Science (New York, N.Y.). 331: 764-8. PMID 21233346 DOI: 10.1126/science.1199784 |
0.76 |
|
2011 |
Hart Y, Madar D, Yuan J, Bren A, Mayo AE, Rabinowitz JD, Alon U. Robust control of nitrogen assimilation by a bifunctional enzyme in E. coli. Molecular Cell. 41: 117-27. PMID 21211727 DOI: 10.1016/j.molcel.2010.12.023 |
0.76 |
|
2010 |
Issaeva I, Cohen AA, Eden E, Cohen-Saidon C, Danon T, Cohen L, Alon U. Generation of double-labeled reporter cell lines for studying co-dynamics of endogenous proteins in individual human cells. Plos One. 5: e13524. PMID 20975952 DOI: 10.1371/journal.pone.0013524 |
0.56 |
|
2010 |
Noor E, Eden E, Milo R, Alon U. Central carbon metabolism as a minimal biochemical walk between precursors for biomass and energy. Molecular Cell. 39: 809-20. PMID 20832731 DOI: 10.1016/j.molcel.2010.08.031 |
0.56 |
|
2010 |
Shoval O, Goentoro L, Hart Y, Mayo A, Sontag E, Alon U. Fold-change detection and scalar symmetry of sensory input fields. Proceedings of the National Academy of Sciences of the United States of America. 107: 15995-6000. PMID 20729472 DOI: 10.1073/pnas.1002352107 |
0.68 |
|
2010 |
Geva-Zatorsky N, Dekel E, Batchelor E, Lahav G, Alon U. Fourier analysis and systems identification of the p53 feedback loop. Proceedings of the National Academy of Sciences of the United States of America. 107: 13550-5. PMID 20622152 DOI: 10.1073/pnas.1001107107 |
0.76 |
|
2010 |
Shachrai I, Zaslaver A, Alon U, Dekel E. Cost of unneeded proteins in E. coli is reduced after several generations in exponential growth. Molecular Cell. 38: 758-67. PMID 20434381 DOI: 10.1016/j.molcel.2010.04.015 |
0.76 |
|
2010 |
Rosenheim JA, Alon U, Shinar G. Evolutionary balancing of fitness-limiting factors. The American Naturalist. 175: 662-74. PMID 20397907 DOI: 10.1086/652468 |
0.76 |
|
2010 |
Geva-Zatorsky N, Dekel E, Cohen AA, Danon T, Cohen L, Alon U. Protein dynamics in drug combinations: a linear superposition of individual-drug responses. Cell. 140: 643-51. PMID 20211134 DOI: 10.1016/j.cell.2010.02.011 |
0.76 |
|
2010 |
Frenkel-Morgenstern M, Cohen AA, Geva-Zatorsky N, Eden E, Prilusky J, Issaeva I, Sigal A, Cohen-Saidon C, Liron Y, Cohen L, Danon T, Perzov N, Alon U. Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells. Nucleic Acids Research. 38: D508-12. PMID 19820112 DOI: 10.1093/nar/gkp808 |
0.76 |
|
2009 |
Goentoro L, Shoval O, Kirschner MW, Alon U. The incoherent feedforward loop can provide fold-change detection in gene regulation. Molecular Cell. 36: 894-9. PMID 20005851 DOI: 10.1016/j.molcel.2009.11.018 |
0.76 |
|
2009 |
Cohen-Saidon C, Cohen AA, Sigal A, Liron Y, Alon U. Dynamics and variability of ERK2 response to EGF in individual living cells. Molecular Cell. 36: 885-93. PMID 20005850 DOI: 10.1016/j.molcel.2009.11.025 |
0.76 |
|
2009 |
Zaslaver A, Kaplan S, Bren A, Jinich A, Mayo A, Dekel E, Alon U, Itzkovitz S. Invariant distribution of promoter activities in Escherichia coli. Plos Computational Biology. 5: e1000545. PMID 19851443 DOI: 10.1371/journal.pcbi.1000545 |
0.76 |
|
2009 |
Rahat O, Alon U, Levy Y, Schreiber G. Understanding hydrogen-bond patterns in proteins using network motifs. Bioinformatics (Oxford, England). 25: 2921-8. PMID 19767299 DOI: 10.1093/bioinformatics/btp541 |
0.76 |
|
2009 |
Kashtan N, Parter M, Dekel E, Mayo AE, Alon U. Extinctions in heterogeneous environments and the evolution of modularity. Evolution; International Journal of Organic Evolution. 63: 1964-75. PMID 19473401 DOI: 10.1111/j.1558-5646.2009.00684.x |
0.76 |
|
2009 |
Oved K, Eden E, Akerman M, Noy R, Wolchinsky R, Izhaki O, Schallmach E, Kubi A, Zabari N, Schachter J, Alon U, Mandel-Gutfreund Y, Besser MJ, Reiter Y. Predicting and controlling the reactivity of immune cell populations against cancer. Molecular Systems Biology. 5: 265. PMID 19401677 DOI: 10.1038/msb.2009.15 |
0.36 |
|
2009 |
Cohen AA, Kalisky T, Mayo A, Geva-Zatorsky N, Danon T, Issaeva I, Kopito RB, Perzov N, Milo R, Sigal A, Alon U. Protein dynamics in individual human cells: experiment and theory. Plos One. 4: e4901. PMID 19381343 DOI: 10.1371/journal.pone.0004901 |
0.76 |
|
2009 |
Shinar G, Rabinowitz JD, Alon U. Robustness in glyoxylate bypass regulation. Plos Computational Biology. 5: e1000297. PMID 19266029 DOI: 10.1371/journal.pcbi.1000297 |
0.76 |
|
2008 |
Cohen AA, Geva-Zatorsky N, Eden E, Frenkel-Morgenstern M, Issaeva I, Sigal A, Milo R, Cohen-Saidon C, Liron Y, Kam Z, Cohen L, Danon T, Perzov N, Alon U. Dynamic proteomics of individual cancer cells in response to a drug. Science (New York, N.Y.). 322: 1511-6. PMID 19023046 DOI: 10.1126/science.1160165 |
0.76 |
|
2008 |
Kaplan S, Bren A, Dekel E, Alon U. The incoherent feed-forward loop can generate non-monotonic input functions for genes. Molecular Systems Biology. 4: 203. PMID 18628744 DOI: 10.1038/msb.2008.43 |
0.76 |
|
2008 |
Oxman E, Alon U, Dekel E. Defined order of evolutionary adaptations: experimental evidence. Evolution; International Journal of Organic Evolution. 62: 1547-54. PMID 18410537 DOI: 10.1111/j.1558-5646.2008.00397.x |
0.76 |
|
2008 |
Kaplan S, Bren A, Zaslaver A, Dekel E, Alon U. Diverse two-dimensional input functions control bacterial sugar genes. Molecular Cell. 29: 786-92. PMID 18374652 DOI: 10.1016/j.molcel.2008.01.021 |
0.76 |
|
2007 |
Shinar G, Milo R, Martínez MR, Alon U. Input output robustness in simple bacterial signaling systems. Proceedings of the National Academy of Sciences of the United States of America. 104: 19931-5. PMID 18077424 DOI: 10.1073/pnas.0706792104 |
0.56 |
|
2007 |
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB. Accurate prediction of gene feedback circuit behavior from component properties. Molecular Systems Biology. 3: 143. PMID 18004276 DOI: 10.1038/msb4100185 |
0.76 |
|
2007 |
Kalisky T, Dekel E, Alon U. Cost-benefit theory and optimal design of gene regulation functions. Physical Biology. 4: 229-45. PMID 17991990 DOI: 10.1088/1478-3975/4/4/001 |
0.76 |
|
2007 |
Sigal A, Danon T, Cohen A, Milo R, Geva-Zatorsky N, Lustig G, Liron Y, Alon U, Perzov N. Generation of a fluorescently labeled endogenous protein library in living human cells. Nature Protocols. 2: 1515-27. PMID 17571059 DOI: 10.1038/nprot.2007.197 |
0.76 |
|
2007 |
Amit I, Citri A, Shay T, Lu Y, Katz M, Zhang F, Tarcic G, Siwak D, Lahad J, Jacob-Hirsch J, Amariglio N, Vaisman N, Segal E, Rechavi G, Alon U, et al. A module of negative feedback regulators defines growth factor signaling. Nature Genetics. 39: 503-12. PMID 17322878 DOI: 10.1038/ng1987 |
0.76 |
|
2007 |
Itzkovitz S, Alon U. The genetic code is nearly optimal for allowing additional information within protein-coding sequences. Genome Research. 17: 405-12. PMID 17293451 DOI: 10.1101/gr.5987307 |
0.32 |
|
2006 |
Sigal A, Milo R, Cohen A, Geva-Zatorsky N, Klein Y, Liron Y, Rosenfeld N, Danon T, Perzov N, Alon U. Variability and memory of protein levels in human cells. Nature. 444: 643-6. PMID 17122776 DOI: 10.1038/nature05316 |
0.76 |
|
2006 |
Zaslaver A, Mayo A, Ronen M, Alon U. Optimal gene partition into operons correlates with gene functional order. Physical Biology. 3: 183-9. PMID 17021382 DOI: 10.1088/1478-3975/3/3/003 |
0.76 |
|
2006 |
Itzkovitz S, Tlusty T, Alon U. Coding limits on the number of transcription factors. Bmc Genomics. 7: 239. PMID 16984633 DOI: 10.1186/1471-2164-7-239 |
0.32 |
|
2006 |
Zaslaver A, Bren A, Ronen M, Itzkovitz S, Kikoin I, Shavit S, Liebermeister W, Surette MG, Alon U. A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nature Methods. 3: 623-8. PMID 16862137 DOI: 10.1038/nmeth895 |
0.76 |
|
2006 |
Sigal A, Milo R, Cohen A, Geva-Zatorsky N, Klein Y, Alaluf I, Swerdlin N, Perzov N, Danon T, Liron Y, Raveh T, Carpenter AE, Lahav G, Alon U. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. Nature Methods. 3: 525-31. PMID 16791210 DOI: 10.1038/nmeth892 |
0.76 |
|
2006 |
Geva-Zatorsky N, Rosenfeld N, Itzkovitz S, Milo R, Sigal A, Dekel E, Yarnitzky T, Liron Y, Polak P, Lahav G, Alon U. Oscillations and variability in the p53 system. Molecular Systems Biology. 2: 2006.0033. PMID 16773083 DOI: 10.1038/msb4100068 |
0.76 |
|
2006 |
Rosenfeld N, Perkins TJ, Alon U, Elowitz MB, Swain PS. A fluctuation method to quantify in vivo fluorescence data. Biophysical Journal. 91: 759-66. PMID 16648159 DOI: 10.1529/biophysj.105.073098 |
0.76 |
|
2006 |
Mayo AE, Setty Y, Shavit S, Zaslaver A, Alon U. Plasticity of the cis-regulatory input function of a gene. Plos Biology. 4: e45. PMID 16602820 DOI: 10.1371/journal.pbio.0040045 |
0.56 |
|
2006 |
Shinar G, Dekel E, Tlusty T, Alon U. Rules for biological regulation based on error minimization. Proceedings of the National Academy of Sciences of the United States of America. 103: 3999-4004. PMID 16537475 DOI: 10.1073/pnas.0506610103 |
0.76 |
|
2006 |
Mangan S, Itzkovitz S, Zaslaver A, Alon U. The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli. Journal of Molecular Biology. 356: 1073-81. PMID 16406067 DOI: 10.1016/j.jmb.2005.12.003 |
0.56 |
|
2005 |
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB. Gene regulation at the single-cell level. Science (New York, N.Y.). 307: 1962-5. PMID 15790856 DOI: 10.1126/science.1106914 |
0.76 |
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2005 |
Itzkovitz S, Levitt R, Kashtan N, Milo R, Itzkovitz M, Alon U. Coarse-graining and self-dissimilarity of complex networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 016127. PMID 15697678 DOI: 10.1103/PhysRevE.71.016127 |
0.56 |
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2004 |
Zaslaver A, Mayo AE, Rosenberg R, Bashkin P, Sberro H, Tsalyuk M, Surette MG, Alon U. Just-in-time transcription program in metabolic pathways. Nature Genetics. 36: 486-91. PMID 15107854 DOI: 10.1038/ng1348 |
0.76 |
|
2004 |
Yeger-Lotem E, Sattath S, Kashtan N, Itzkovitz S, Milo R, Pinter RY, Alon U, Margalit H. Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 101: 5934-9. PMID 15079056 DOI: 10.1073/pnas.0306752101 |
0.56 |
|
2004 |
Milo R, Itzkovitz S, Kashtan N, Levitt R, Shen-Orr S, Ayzenshtat I, Sheffer M, Alon U. Superfamilies of evolved and designed networks. Science (New York, N.Y.). 303: 1538-42. PMID 15001784 DOI: 10.1126/science.1089167 |
0.76 |
|
2004 |
Lahav G, Rosenfeld N, Sigal A, Geva-Zatorsky N, Levine AJ, Elowitz MB, Alon U. Dynamics of the p53-Mdm2 feedback loop in individual cells. Nature Genetics. 36: 147-50. PMID 14730303 DOI: 10.1038/ng1293 |
0.76 |
|
2003 |
Mangan S, Zaslaver A, Alon U. The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. Journal of Molecular Biology. 334: 197-204. PMID 14607112 |
0.56 |
|
2003 |
Setty Y, Mayo AE, Surette MG, Alon U. Detailed map of a cis-regulatory input function. Proceedings of the National Academy of Sciences of the United States of America. 100: 7702-7. PMID 12805558 DOI: 10.1073/pnas.1230759100 |
0.76 |
|
2003 |
Rosenfeld N, Alon U. Response delays and the structure of transcription networks. Journal of Molecular Biology. 329: 645-54. PMID 12787666 DOI: 10.1016/S0022-2836(03)00506-0 |
0.76 |
|
2002 |
Rosenfeld N, Elowitz MB, Alon U. Negative autoregulation speeds the response times of transcription networks. Journal of Molecular Biology. 323: 785-93. PMID 12417193 DOI: 10.1016/S0022-2836(02)00994-4 |
0.76 |
|
2002 |
Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U. Network motifs: simple building blocks of complex networks. Science (New York, N.Y.). 298: 824-7. PMID 12399590 DOI: 10.1126/science.298.5594.824 |
0.76 |
|
2002 |
Ronen M, Rosenberg R, Shraiman BI, Alon U. Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. Proceedings of the National Academy of Sciences of the United States of America. 99: 10555-60. PMID 12145321 DOI: 10.1073/pnas.152046799 |
0.76 |
|
2002 |
Shen-Orr SS, Milo R, Mangan S, Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nature Genetics. 31: 64-8. PMID 11967538 DOI: 10.1038/ng881 |
0.76 |
|
2001 |
Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science (New York, N.Y.). 292: 2080-3. PMID 11408658 DOI: 10.1126/science.1058758 |
0.76 |
|
2001 |
Barkai N, Alon U, Leibler S. Robust amplification in adaptive signal transduction networks Comptes Rendus De L'Academie Des Sciences - Series Iv: Physics, Astrophysics. 2: 871-877. DOI: 10.1016/S1296-2147(01)01230-6 |
0.76 |
|
2000 |
Lev Bar-Or R, Maya R, Segel LA, Alon U, Levine AJ, Oren M. Generation of oscillations by the p53-Mdm2 feedback loop: a theoretical and experimental study. Proceedings of the National Academy of Sciences of the United States of America. 97: 11250-5. PMID 11016968 DOI: 10.1073/pnas.210171597 |
0.76 |
|
2000 |
Staropoli JF, Alon U. Computerized analysis of chemotaxis at different stages of bacterial growth Biophysical Journal. 78: 513-519. PMID 10620314 DOI: 10.1016/S0006-3495(00)76613-6 |
0.76 |
|
1999 |
Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, Levine AJ. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America. 96: 6745-50. PMID 10359783 DOI: 10.1073/pnas.96.12.6745 |
0.76 |
|
1998 |
Alon U, Camarena L, Surette MG, Aguera y Arcas B, Liu Y, Leibler S, Stock JB. Response regulator output in bacterial chemotaxis. The Embo Journal. 17: 4238-48. PMID 9687492 DOI: 10.1093/emboj/17.15.4238 |
0.76 |
|
1995 |
Hecht J, Orszag SA, McCrory RL, Ofer D, Alon U, Shvarts D. Three-Dimensional Simulations and Analysis of the Nonlinear Stage of the Rayleigh-Taylor Instability Laser and Particle Beams. 13: 423-440. DOI: 10.1017/S026303460000954X |
0.76 |
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