Uri Alon - Publications

Weizmann Institute of Science, Rehovot, Israel 
Bioinformatics Biology, General Biophysics

111 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Katzir I, Adler M, Karin O, Mendelsohn-Cohen N, Mayo A, Alon U. Senescent cells and the incidence of age-related diseases. Aging Cell. e13314. PMID 33559235 DOI: 10.1111/acel.13314  0.68
2021 Tendler A, Bar A, Mendelsohn-Cohen N, Karin O, Korem Kohanim Y, Maimon L, Milo T, Raz M, Mayo A, Tanay A, Alon U. Hormone seasonality in medical records suggests circannual endocrine circuits. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33531344 DOI: 10.1073/pnas.2003926118  0.68
2020 Shimshoni E, Adir I, Afik R, Solomonov I, Shenoy A, Adler M, Puricelli L, Sabino F, Savickas S, Mouhadeb O, Gluck N, Fishman S, Werner L, Salame TM, Shouval DS, ... ... Alon U, et al. Distinct extracellular-matrix remodeling events precede symptoms of inflammation. Matrix Biology : Journal of the International Society For Matrix Biology. PMID 33246101 DOI: 10.1016/j.matbio.2020.11.001  0.68
2020 Maimon L, Milo T, Moyal RS, Mayo A, Danon T, Bren A, Alon U. Timescales of Human Hair Cortisol Dynamics. Iscience. 23: 101501. PMID 32911331 DOI: 10.1016/j.isci.2020.101501  0.68
2020 Korem Kohanim Y, Tendler A, Mayo A, Friedman N, Alon U. Endocrine Autoimmune Disease as a Fragility of Immune Surveillance against Hypersecreting Mutants. Immunity. 52: 872-884.e5. PMID 32433950 DOI: 10.1016/j.immuni.2020.04.022  0.68
2020 Adler M, Mayo A, Zhou X, Franklin RA, Meizlish ML, Medzhitov R, Kallenberger SM, Alon U. Principles of Cell Circuits for Tissue Repair and Fibrosis. Iscience. 23: 100841. PMID 32058955 DOI: 10.1016/j.isci.2020.100841  0.68
2019 Tendler A, Zimmer A, Mayo A, Alon U. Noise-precision tradeoff in predicting combinations of mutations and drugs. Plos Computational Biology. 15: e1006956. PMID 31116755 DOI: 10.1371/journal.pcbi.1006956  0.68
2019 Adler M, Korem Kohanim Y, Tendler A, Mayo A, Alon U. Continuum of Gene-Expression Profiles Provides Spatial Division of Labor within a Differentiated Cell Type. Cell Systems. PMID 30638811 DOI: 10.1016/j.cels.2018.12.008  0.68
2019 Hausser J, Mayo A, Keren L, Alon U. Central dogma rates and the trade-off between precision and economy in gene expression. Nature Communications. 10: 68. PMID 30622246 DOI: 10.1038/s41467-018-07391-8  0.68
2018 Korem Kohanim Y, Levi D, Jona G, Towbin BD, Bren A, Alon U. A Bacterial Growth Law out of Steady State. Cell Reports. 23: 2891-2900. PMID 29874577 DOI: 10.1016/j.celrep.2018.05.007  0.36
2018 Sheftel H, Szekely P, Mayo A, Sella G, Alon U. Evolutionary trade-offs and the structure of polymorphisms. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 29632259 DOI: 10.1098/rstb.2017.0105  0.68
2018 Liron Y, Raindel N, Alon U. Dramatic action: A theater-based paradigm for analyzing human interactions. Plos One. 13: e0193404. PMID 29518101 DOI: 10.1371/journal.pone.0193404  0.56
2018 Adler M, Mayo A, Zhou X, Franklin RA, Jacox JB, Medzhitov R, Alon U. Endocytosis as a stabilizing mechanism for tissue homeostasis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29429964 DOI: 10.1073/pnas.1714377115  0.68
2018 Zhou X, Franklin RA, Adler M, Jacox JB, Bailis W, Shyer JA, Flavell RA, Mayo A, Alon U, Medzhitov R. Circuit Design Features of a Stable Two-Cell System. Cell. PMID 29398113 DOI: 10.1016/j.cell.2018.01.015  0.68
2017 Drayman N, Karin O, Mayo A, Danon T, Shapira L, Rafael D, Zimmer A, Bren A, Kobiler O, Alon U. Dynamic Proteomics of Herpes Simplex Virus Infection. Mbio. 8. PMID 29114028 DOI: 10.1128/mBio.01612-17  0.68
2017 Zimmer A, Tendler A, Katzir I, Mayo A, Alon U. Prediction of drug cocktail effects when the number of measurements is limited. Plos Biology. 15: e2002518. PMID 29073201 DOI: 10.1371/journal.pbio.2002518  0.68
2017 Zimmer A, Amar-Farkash S, Danon T, Alon U. Dynamic proteomics reveals bimodal protein dynamics of cancer cells in response to HSP90 inhibitor. Bmc Systems Biology. 11: 33. PMID 28270142 DOI: 10.1186/s12918-017-0410-8  0.56
2017 Gaziv G, Noy L, Liron Y, Alon U. A reduced-dimensionality approach to uncovering dyadic modes of body motion in conversations. Plos One. 12: e0170786. PMID 28141861 DOI: 10.1371/journal.pone.0170786  0.56
2017 Towbin BD, Korem Y, Bren A, Doron S, Sorek R, Alon U. Optimality and sub-optimality in a bacterial growth law. Nature Communications. 8: 14123. PMID 28102224 DOI: 10.1038/ncomms14123  0.36
2017 Adler M, Szekely P, Mayo A, Alon U. Optimal Regulatory Circuit Topologies for Fold-Change Detection. Cell Systems. PMID 28089543 DOI: 10.1016/j.cels.2016.12.009  0.68
2016 Dahan A, Noy L, Hart Y, Mayo A, Alon U. Exit from Synchrony in Joint Improvised Motion. Plos One. 11: e0160747. PMID 27711185 DOI: 10.1371/journal.pone.0160747  0.68
2016 Zimmer A, Katzir I, Dekel E, Mayo AE, Alon U. Prediction of multidimensional drug dose responses based on measurements of drug pairs. Proceedings of the National Academy of Sciences of the United States of America. PMID 27562164 DOI: 10.1073/pnas.1606301113  0.76
2016 Keren L, Hausser J, Lotan-Pompan M, Vainberg Slutskin I, Alisar H, Kaminski S, Weinberger A, Alon U, Milo R, Segal E. Massively Parallel Interrogation of the Effects of Gene Expression Levels on Fitness. Cell. PMID 27545349 DOI: 10.1016/j.cell.2016.07.024  0.76
2016 Bren A, Park JO, Towbin BD, Dekel E, Rabinowitz JD, Alon U. Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP. Scientific Reports. 6: 24834. PMID 27109914 DOI: 10.1038/srep24834  0.76
2015 Szekely P, Korem Y, Moran U, Mayo A, Alon U. The Mass-Longevity Triangle: Pareto Optimality and the Geometry of Life-History Trait Space. Plos Computational Biology. 11: e1004524. PMID 26465336 DOI: 10.1371/journal.pcbi.1004524  0.76
2015 Korem Y, Szekely P, Hart Y, Sheftel H, Hausser J, Mayo A, Rothenberg ME, Kalisky T, Alon U. Geometry of the Gene Expression Space of Individual Cells. Plos Computational Biology. 11: e1004224. PMID 26161936 DOI: 10.1371/journal.pcbi.1004224  0.76
2015 Tendler A, Mayo A, Alon U. Evolutionary tradeoffs, Pareto optimality and the morphology of ammonite shells. Bmc Systems Biology. 9: 12. PMID 25884468 DOI: 10.1186/s12918-015-0149-z  0.68
2015 Noy L, Alon U, Friedman J. Corrective jitter motion shows similar individual frequencies for the arm and the finger. Experimental Brain Research. 233: 1307-20. PMID 25630905 DOI: 10.1007/s00221-015-4204-1  0.76
2015 Hart Y, Sheftel H, Hausser J, Szekely P, Ben-Moshe NB, Korem Y, Tendler A, Mayo AE, Alon U. Inferring biological tasks using Pareto analysis of high-dimensional data. Nature Methods. 12: 233-5, 3 p following. PMID 25622107 DOI: 10.1038/nmeth.3254  0.76
2014 Aidelberg G, Towbin BD, Rothschild D, Dekel E, Bren A, Alon U. Hierarchy of non-glucose sugars in Escherichia coli. Bmc Systems Biology. 8: 133. PMID 25539838 DOI: 10.1186/s12918-014-0133-z  0.76
2014 Adler M, Mayo A, Alon U. Logarithmic and power law input-output relations in sensory systems with fold-change detection. Plos Computational Biology. 10: e1003781. PMID 25121598 DOI: 10.1371/journal.pcbi.1003781  0.76
2014 Rothschild D, Dekel E, Hausser J, Bren A, Aidelberg G, Szekely P, Alon U. Linear superposition and prediction of bacterial promoter activity dynamics in complex conditions. Plos Computational Biology. 10: e1003602. PMID 24809350 DOI: 10.1371/journal.pcbi.1003602  0.76
2014 Dasgupta T, Croll DH, Owen JA, Vander Heiden MG, Locasale JW, Alon U, Cantley LC, Gunawardena J. A fundamental trade-off in covalent switching and its circumvention by enzyme bifunctionality in glucose homeostasis. The Journal of Biological Chemistry. 289: 13010-25. PMID 24634222 DOI: 10.1074/jbc.M113.546515  0.76
2014 Farkash-Amar S, Zimmer A, Eden E, Cohen A, Geva-Zatorsky N, Cohen L, Milo R, Sigal A, Danon T, Alon U. Noise genetics: inferring protein function by correlating phenotype with protein levels and localization in individual human cells. Plos Genetics. 10: e1004176. PMID 24603725 DOI: 10.1371/journal.pgen.1004176  0.76
2014 Hart Y, Noy L, Feniger-Schaal R, Mayo AE, Alon U. Individuality and togetherness in joint improvised motion. Plos One. 9: e87213. PMID 24533054 DOI: 10.1371/journal.pone.0087213  0.76
2013 Madar D, Dekel E, Bren A, Zimmer A, Porat Z, Alon U. Promoter activity dynamics in the lag phase of Escherichia coli. Bmc Systems Biology. 7: 136. PMID 24378036 DOI: 10.1186/1752-0509-7-136  0.76
2013 Keren L, Zackay O, Lotan-Pompan M, Barenholz U, Dekel E, Sasson V, Aidelberg G, Bren A, Zeevi D, Weinberger A, Alon U, Milo R, Segal E. Promoters maintain their relative activity levels under different growth conditions. Molecular Systems Biology. 9: 701. PMID 24169404 DOI: 10.1038/msb.2013.59  0.76
2013 Kavanagh KD, Shoval O, Winslow BB, Alon U, Leary BP, Kan A, Tabin CJ. Developmental bias in the evolution of phalanges. Proceedings of the National Academy of Sciences of the United States of America. 110: 18190-5. PMID 24151335 DOI: 10.1073/pnas.1315213110  0.76
2013 Szekely P, Sheftel H, Mayo A, Alon U. Evolutionary tradeoffs between economy and effectiveness in biological homeostasis systems. Plos Computational Biology. 9: e1003163. PMID 23950698 DOI: 10.1371/journal.pcbi.1003163  0.76
2013 Mitarai N, Alon U, Jensen MH. Entrainment of noise-induced and limit cycle oscillators under weak noise. Chaos (Woodbury, N.Y.). 23: 023125. PMID 23822490 DOI: 10.1063/1.4808253  0.76
2013 Sheftel H, Shoval O, Mayo A, Alon U. The geometry of the Pareto front in biological phenotype space. Ecology and Evolution. 3: 1471-83. PMID 23789060 DOI: 10.1002/ece3.528  0.68
2013 Bren A, Hart Y, Dekel E, Koster D, Alon U. The last generation of bacterial growth in limiting nutrient. Bmc Systems Biology. 7: 27. PMID 23531321 DOI: 10.1186/1752-0509-7-27  0.76
2013 Shoval O, Sheftel H, Shinar G, Hart Y, Ramote O, Mayo A, Dekel E, Kavanagh K, Alon U. Response to comment on "Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space". Science (New York, N.Y.). 339: 757. PMID 23413339 DOI: 10.1126/science.1228921  0.76
2012 Farkash-Amar S, Eden E, Cohen A, Geva-Zatorsky N, Cohen L, Milo R, Sigal A, Danon T, Alon U. Dynamic proteomics of human protein level and localization across the cell cycle. Plos One. 7: e48722. PMID 23144944 DOI: 10.1371/journal.pone.0048722  0.76
2012 Koster DA, Mayo A, Bren A, Alon U. Surface growth of a motile bacterial population resembles growth in a chemostat. Journal of Molecular Biology. 424: 180-91. PMID 23000812 DOI: 10.1016/j.jmb.2012.09.005  0.68
2012 Sasson V, Shachrai I, Bren A, Dekel E, Alon U. Mode of regulation and the insulation of bacterial gene expression. Molecular Cell. 46: 399-407. PMID 22633488 DOI: 10.1016/j.molcel.2012.04.032  0.76
2012 Shoval O, Sheftel H, Shinar G, Hart Y, Ramote O, Mayo A, Dekel E, Kavanagh K, Alon U. Evolutionary trade-offs, Pareto optimality, and the geometry of phenotype space. Science (New York, N.Y.). 336: 1157-60. PMID 22539553 DOI: 10.1126/science.1217405  0.76
2012 Geva-Zatorsky N, Issaeva I, Mayo A, Cohen A, Dekel E, Danon T, Cohen L, Liron Y, Alon U, Eden E. Using bleach-chase to measure protein half-lives in living cells. Nature Protocols. 7: 801-11. PMID 22461069 DOI: 10.1038/nprot.2012.028  0.76
2012 Silander OK, Nikolic N, Zaslaver A, Bren A, Kikoin I, Alon U, Ackermann M. A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli. Plos Genetics. 8: e1002443. PMID 22275871 DOI: 10.1371/journal.pgen.1002443  0.76
2011 Noy L, Dekel E, Alon U. The mirror game as a paradigm for studying the dynamics of two people improvising motion together. Proceedings of the National Academy of Sciences of the United States of America. 108: 20947-52. PMID 22160696 DOI: 10.1073/pnas.1108155108  0.76
2011 Hart Y, Mayo AE, Milo R, Alon U. Robust control of PEP formation rate in the carbon fixation pathway of C(4) plants by a bi-functional enzyme. Bmc Systems Biology. 5: 171. PMID 22024416 DOI: 10.1186/1752-0509-5-171  0.56
2011 Madar D, Dekel E, Bren A, Alon U. Negative auto-regulation increases the input dynamic-range of the arabinose system of Escherichia coli. Bmc Systems Biology. 5: 111. PMID 21749723 DOI: 10.1186/1752-0509-5-111  0.76
2011 Kirschner MW, Shapiro L, McAdams H, Almouzni G, Sharp PA, Young RA, Alon U. Fifty years after Jacob and Monod: what are the unanswered questions in molecular biology? Molecular Cell. 42: 403-4. PMID 21748867  0.76
2011 Eden E, Geva-Zatorsky N, Issaeva I, Cohen A, Dekel E, Danon T, Cohen L, Mayo A, Alon U. Proteome half-life dynamics in living human cells. Science (New York, N.Y.). 331: 764-8. PMID 21233346 DOI: 10.1126/science.1199784  0.76
2011 Hart Y, Madar D, Yuan J, Bren A, Mayo AE, Rabinowitz JD, Alon U. Robust control of nitrogen assimilation by a bifunctional enzyme in E. coli. Molecular Cell. 41: 117-27. PMID 21211727 DOI: 10.1016/j.molcel.2010.12.023  0.76
2010 Issaeva I, Cohen AA, Eden E, Cohen-Saidon C, Danon T, Cohen L, Alon U. Generation of double-labeled reporter cell lines for studying co-dynamics of endogenous proteins in individual human cells. Plos One. 5: e13524. PMID 20975952 DOI: 10.1371/journal.pone.0013524  0.56
2010 Noor E, Eden E, Milo R, Alon U. Central carbon metabolism as a minimal biochemical walk between precursors for biomass and energy. Molecular Cell. 39: 809-20. PMID 20832731 DOI: 10.1016/j.molcel.2010.08.031  0.56
2010 Shoval O, Goentoro L, Hart Y, Mayo A, Sontag E, Alon U. Fold-change detection and scalar symmetry of sensory input fields. Proceedings of the National Academy of Sciences of the United States of America. 107: 15995-6000. PMID 20729472 DOI: 10.1073/pnas.1002352107  0.68
2010 Geva-Zatorsky N, Dekel E, Batchelor E, Lahav G, Alon U. Fourier analysis and systems identification of the p53 feedback loop. Proceedings of the National Academy of Sciences of the United States of America. 107: 13550-5. PMID 20622152 DOI: 10.1073/pnas.1001107107  0.76
2010 Shachrai I, Zaslaver A, Alon U, Dekel E. Cost of unneeded proteins in E. coli is reduced after several generations in exponential growth. Molecular Cell. 38: 758-67. PMID 20434381 DOI: 10.1016/j.molcel.2010.04.015  0.76
2010 Rosenheim JA, Alon U, Shinar G. Evolutionary balancing of fitness-limiting factors. The American Naturalist. 175: 662-74. PMID 20397907 DOI: 10.1086/652468  0.76
2010 Geva-Zatorsky N, Dekel E, Cohen AA, Danon T, Cohen L, Alon U. Protein dynamics in drug combinations: a linear superposition of individual-drug responses. Cell. 140: 643-51. PMID 20211134 DOI: 10.1016/j.cell.2010.02.011  0.76
2010 Frenkel-Morgenstern M, Cohen AA, Geva-Zatorsky N, Eden E, Prilusky J, Issaeva I, Sigal A, Cohen-Saidon C, Liron Y, Cohen L, Danon T, Perzov N, Alon U. Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells. Nucleic Acids Research. 38: D508-12. PMID 19820112 DOI: 10.1093/nar/gkp808  0.76
2009 Goentoro L, Shoval O, Kirschner MW, Alon U. The incoherent feedforward loop can provide fold-change detection in gene regulation. Molecular Cell. 36: 894-9. PMID 20005851 DOI: 10.1016/j.molcel.2009.11.018  0.76
2009 Cohen-Saidon C, Cohen AA, Sigal A, Liron Y, Alon U. Dynamics and variability of ERK2 response to EGF in individual living cells. Molecular Cell. 36: 885-93. PMID 20005850 DOI: 10.1016/j.molcel.2009.11.025  0.76
2009 Zaslaver A, Kaplan S, Bren A, Jinich A, Mayo A, Dekel E, Alon U, Itzkovitz S. Invariant distribution of promoter activities in Escherichia coli. Plos Computational Biology. 5: e1000545. PMID 19851443 DOI: 10.1371/journal.pcbi.1000545  0.76
2009 Rahat O, Alon U, Levy Y, Schreiber G. Understanding hydrogen-bond patterns in proteins using network motifs. Bioinformatics (Oxford, England). 25: 2921-8. PMID 19767299 DOI: 10.1093/bioinformatics/btp541  0.76
2009 Kashtan N, Parter M, Dekel E, Mayo AE, Alon U. Extinctions in heterogeneous environments and the evolution of modularity. Evolution; International Journal of Organic Evolution. 63: 1964-75. PMID 19473401 DOI: 10.1111/j.1558-5646.2009.00684.x  0.76
2009 Oved K, Eden E, Akerman M, Noy R, Wolchinsky R, Izhaki O, Schallmach E, Kubi A, Zabari N, Schachter J, Alon U, Mandel-Gutfreund Y, Besser MJ, Reiter Y. Predicting and controlling the reactivity of immune cell populations against cancer. Molecular Systems Biology. 5: 265. PMID 19401677 DOI: 10.1038/msb.2009.15  0.36
2009 Cohen AA, Kalisky T, Mayo A, Geva-Zatorsky N, Danon T, Issaeva I, Kopito RB, Perzov N, Milo R, Sigal A, Alon U. Protein dynamics in individual human cells: experiment and theory. Plos One. 4: e4901. PMID 19381343 DOI: 10.1371/journal.pone.0004901  0.76
2009 Shinar G, Rabinowitz JD, Alon U. Robustness in glyoxylate bypass regulation. Plos Computational Biology. 5: e1000297. PMID 19266029 DOI: 10.1371/journal.pcbi.1000297  0.76
2008 Cohen AA, Geva-Zatorsky N, Eden E, Frenkel-Morgenstern M, Issaeva I, Sigal A, Milo R, Cohen-Saidon C, Liron Y, Kam Z, Cohen L, Danon T, Perzov N, Alon U. Dynamic proteomics of individual cancer cells in response to a drug. Science (New York, N.Y.). 322: 1511-6. PMID 19023046 DOI: 10.1126/science.1160165  0.76
2008 Kaplan S, Bren A, Dekel E, Alon U. The incoherent feed-forward loop can generate non-monotonic input functions for genes. Molecular Systems Biology. 4: 203. PMID 18628744 DOI: 10.1038/msb.2008.43  0.76
2008 Oxman E, Alon U, Dekel E. Defined order of evolutionary adaptations: experimental evidence. Evolution; International Journal of Organic Evolution. 62: 1547-54. PMID 18410537 DOI: 10.1111/j.1558-5646.2008.00397.x  0.76
2008 Kaplan S, Bren A, Zaslaver A, Dekel E, Alon U. Diverse two-dimensional input functions control bacterial sugar genes. Molecular Cell. 29: 786-92. PMID 18374652 DOI: 10.1016/j.molcel.2008.01.021  0.76
2007 Shinar G, Milo R, Martínez MR, Alon U. Input output robustness in simple bacterial signaling systems. Proceedings of the National Academy of Sciences of the United States of America. 104: 19931-5. PMID 18077424 DOI: 10.1073/pnas.0706792104  0.56
2007 Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB. Accurate prediction of gene feedback circuit behavior from component properties. Molecular Systems Biology. 3: 143. PMID 18004276 DOI: 10.1038/msb4100185  0.76
2007 Kalisky T, Dekel E, Alon U. Cost-benefit theory and optimal design of gene regulation functions. Physical Biology. 4: 229-45. PMID 17991990 DOI: 10.1088/1478-3975/4/4/001  0.76
2007 Sigal A, Danon T, Cohen A, Milo R, Geva-Zatorsky N, Lustig G, Liron Y, Alon U, Perzov N. Generation of a fluorescently labeled endogenous protein library in living human cells. Nature Protocols. 2: 1515-27. PMID 17571059 DOI: 10.1038/nprot.2007.197  0.76
2007 Amit I, Citri A, Shay T, Lu Y, Katz M, Zhang F, Tarcic G, Siwak D, Lahad J, Jacob-Hirsch J, Amariglio N, Vaisman N, Segal E, Rechavi G, Alon U, et al. A module of negative feedback regulators defines growth factor signaling. Nature Genetics. 39: 503-12. PMID 17322878 DOI: 10.1038/ng1987  0.76
2007 Itzkovitz S, Alon U. The genetic code is nearly optimal for allowing additional information within protein-coding sequences. Genome Research. 17: 405-12. PMID 17293451 DOI: 10.1101/gr.5987307  0.32
2006 Sigal A, Milo R, Cohen A, Geva-Zatorsky N, Klein Y, Liron Y, Rosenfeld N, Danon T, Perzov N, Alon U. Variability and memory of protein levels in human cells. Nature. 444: 643-6. PMID 17122776 DOI: 10.1038/nature05316  0.76
2006 Zaslaver A, Mayo A, Ronen M, Alon U. Optimal gene partition into operons correlates with gene functional order. Physical Biology. 3: 183-9. PMID 17021382 DOI: 10.1088/1478-3975/3/3/003  0.76
2006 Itzkovitz S, Tlusty T, Alon U. Coding limits on the number of transcription factors. Bmc Genomics. 7: 239. PMID 16984633 DOI: 10.1186/1471-2164-7-239  0.32
2006 Zaslaver A, Bren A, Ronen M, Itzkovitz S, Kikoin I, Shavit S, Liebermeister W, Surette MG, Alon U. A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nature Methods. 3: 623-8. PMID 16862137 DOI: 10.1038/nmeth895  0.76
2006 Sigal A, Milo R, Cohen A, Geva-Zatorsky N, Klein Y, Alaluf I, Swerdlin N, Perzov N, Danon T, Liron Y, Raveh T, Carpenter AE, Lahav G, Alon U. Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. Nature Methods. 3: 525-31. PMID 16791210 DOI: 10.1038/nmeth892  0.76
2006 Geva-Zatorsky N, Rosenfeld N, Itzkovitz S, Milo R, Sigal A, Dekel E, Yarnitzky T, Liron Y, Polak P, Lahav G, Alon U. Oscillations and variability in the p53 system. Molecular Systems Biology. 2: 2006.0033. PMID 16773083 DOI: 10.1038/msb4100068  0.76
2006 Rosenfeld N, Perkins TJ, Alon U, Elowitz MB, Swain PS. A fluctuation method to quantify in vivo fluorescence data. Biophysical Journal. 91: 759-66. PMID 16648159 DOI: 10.1529/biophysj.105.073098  0.76
2006 Mayo AE, Setty Y, Shavit S, Zaslaver A, Alon U. Plasticity of the cis-regulatory input function of a gene. Plos Biology. 4: e45. PMID 16602820 DOI: 10.1371/journal.pbio.0040045  0.56
2006 Shinar G, Dekel E, Tlusty T, Alon U. Rules for biological regulation based on error minimization. Proceedings of the National Academy of Sciences of the United States of America. 103: 3999-4004. PMID 16537475 DOI: 10.1073/pnas.0506610103  0.76
2006 Mangan S, Itzkovitz S, Zaslaver A, Alon U. The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli. Journal of Molecular Biology. 356: 1073-81. PMID 16406067 DOI: 10.1016/j.jmb.2005.12.003  0.56
2005 Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB. Gene regulation at the single-cell level. Science (New York, N.Y.). 307: 1962-5. PMID 15790856 DOI: 10.1126/science.1106914  0.76
2005 Itzkovitz S, Levitt R, Kashtan N, Milo R, Itzkovitz M, Alon U. Coarse-graining and self-dissimilarity of complex networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 016127. PMID 15697678 DOI: 10.1103/PhysRevE.71.016127  0.56
2004 Zaslaver A, Mayo AE, Rosenberg R, Bashkin P, Sberro H, Tsalyuk M, Surette MG, Alon U. Just-in-time transcription program in metabolic pathways. Nature Genetics. 36: 486-91. PMID 15107854 DOI: 10.1038/ng1348  0.76
2004 Yeger-Lotem E, Sattath S, Kashtan N, Itzkovitz S, Milo R, Pinter RY, Alon U, Margalit H. Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 101: 5934-9. PMID 15079056 DOI: 10.1073/pnas.0306752101  0.56
2004 Milo R, Itzkovitz S, Kashtan N, Levitt R, Shen-Orr S, Ayzenshtat I, Sheffer M, Alon U. Superfamilies of evolved and designed networks. Science (New York, N.Y.). 303: 1538-42. PMID 15001784 DOI: 10.1126/science.1089167  0.76
2004 Lahav G, Rosenfeld N, Sigal A, Geva-Zatorsky N, Levine AJ, Elowitz MB, Alon U. Dynamics of the p53-Mdm2 feedback loop in individual cells. Nature Genetics. 36: 147-50. PMID 14730303 DOI: 10.1038/ng1293  0.76
2003 Mangan S, Zaslaver A, Alon U. The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks. Journal of Molecular Biology. 334: 197-204. PMID 14607112  0.56
2003 Setty Y, Mayo AE, Surette MG, Alon U. Detailed map of a cis-regulatory input function. Proceedings of the National Academy of Sciences of the United States of America. 100: 7702-7. PMID 12805558 DOI: 10.1073/pnas.1230759100  0.76
2003 Rosenfeld N, Alon U. Response delays and the structure of transcription networks. Journal of Molecular Biology. 329: 645-54. PMID 12787666 DOI: 10.1016/S0022-2836(03)00506-0  0.76
2002 Rosenfeld N, Elowitz MB, Alon U. Negative autoregulation speeds the response times of transcription networks. Journal of Molecular Biology. 323: 785-93. PMID 12417193 DOI: 10.1016/S0022-2836(02)00994-4  0.76
2002 Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U. Network motifs: simple building blocks of complex networks. Science (New York, N.Y.). 298: 824-7. PMID 12399590 DOI: 10.1126/science.298.5594.824  0.76
2002 Ronen M, Rosenberg R, Shraiman BI, Alon U. Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. Proceedings of the National Academy of Sciences of the United States of America. 99: 10555-60. PMID 12145321 DOI: 10.1073/pnas.152046799  0.76
2002 Shen-Orr SS, Milo R, Mangan S, Alon U. Network motifs in the transcriptional regulation network of Escherichia coli. Nature Genetics. 31: 64-8. PMID 11967538 DOI: 10.1038/ng881  0.76
2001 Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, Leibler S, Surette MG, Alon U. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science (New York, N.Y.). 292: 2080-3. PMID 11408658 DOI: 10.1126/science.1058758  0.76
2001 Barkai N, Alon U, Leibler S. Robust amplification in adaptive signal transduction networks Comptes Rendus De L'Academie Des Sciences - Series Iv: Physics, Astrophysics. 2: 871-877. DOI: 10.1016/S1296-2147(01)01230-6  0.76
2000 Lev Bar-Or R, Maya R, Segel LA, Alon U, Levine AJ, Oren M. Generation of oscillations by the p53-Mdm2 feedback loop: a theoretical and experimental study. Proceedings of the National Academy of Sciences of the United States of America. 97: 11250-5. PMID 11016968 DOI: 10.1073/pnas.210171597  0.76
2000 Staropoli JF, Alon U. Computerized analysis of chemotaxis at different stages of bacterial growth Biophysical Journal. 78: 513-519. PMID 10620314 DOI: 10.1016/S0006-3495(00)76613-6  0.76
1999 Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, Levine AJ. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America. 96: 6745-50. PMID 10359783 DOI: 10.1073/pnas.96.12.6745  0.76
1998 Alon U, Camarena L, Surette MG, Aguera y Arcas B, Liu Y, Leibler S, Stock JB. Response regulator output in bacterial chemotaxis. The Embo Journal. 17: 4238-48. PMID 9687492 DOI: 10.1093/emboj/17.15.4238  0.76
1995 Hecht J, Orszag SA, McCrory RL, Ofer D, Alon U, Shvarts D. Three-Dimensional Simulations and Analysis of the Nonlinear Stage of the Rayleigh-Taylor Instability Laser and Particle Beams. 13: 423-440. DOI: 10.1017/S026303460000954X  0.76
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