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Bogdan Barz, Ph.D. - Publications

Affiliations: 
2009 University of Missouri - Columbia, Columbia, MO, United States 
Area:
General Biophysics
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nath S, Buell AK, Barz B. Pyroglutamate-modified amyloid β(3-42) monomer has more β-sheet content than the amyloid β(1-42) monomer. Physical Chemistry Chemical Physics : Pccp. PMID 37306611 DOI: 10.1039/d2cp05961d  0.706
2022 Leguizamon Herrera VL, Buell AK, Willbold D, Barz B. Interaction of Therapeutic d-Peptides with Aβ42 Monomers, Thermodynamics, and Binding Analysis. Acs Chemical Neuroscience. PMID 35580288 DOI: 10.1021/acschemneuro.2c00102  0.655
2022 Samantray S, Schumann W, Illig AM, Carballo-Pacheco M, Paul A, Barz B, Strodel B. Molecular Dynamics Simulations of Protein Aggregation: Protocols for Simulation Setup and Analysis with Markov State Models and Transition Networks. Methods in Molecular Biology (Clifton, N.J.). 2340: 235-279. PMID 35167078 DOI: 10.1007/978-1-0716-1546-1_12  0.394
2021 Barz B, Buell AK, Nath S. Compact fibril-like structure of amyloid β-peptide (1-42) monomers. Chemical Communications (Cambridge, England). PMID 33399148 DOI: 10.1039/d0cc06607a  0.71
2017 Barz B, Liao Q, Strodel B. Pathways of amyloid-β aggregation depend on oligomer shape. Journal of the American Chemical Society. PMID 29235346 DOI: 10.1021/Jacs.7B10343  0.485
2017 Voelker MJ, Barz B, Urbanc B. Fully-Atomistic Aβ40 and Aβ42 Oligomers in Water: Observation of Pore-Like Conformations. Journal of Chemical Theory and Computation. PMID 28727426 DOI: 10.1021/Acs.Jctc.7B00495  0.468
2017 Wolff M, Zhang-Haagen B, Decker C, Barz B, Schneider M, Biehl R, Radulescu A, Strodel B, Willbold D, Nagel-Steger L. Aβ42 pentamers/hexamers are the smallest detectable oligomers in solution. Scientific Reports. 7: 2493. PMID 28559586 DOI: 10.1038/S41598-017-02370-3  0.422
2017 Liao Q, Owen MC, Olubiyi OO, Barz B, Strodel B. Conformational Transitions of the Amyloid-β Peptide Upon Copper(II) Binding and pH Changes Israel Journal of Chemistry. 57: 771-784. DOI: 10.1002/Ijch.201600108  0.312
2016 Barz B, Strodel B. Understanding Amyloid-β Oligomerization at the Molecular Level: the Role of the Fibril Surface. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27135646 DOI: 10.1002/Chem.201601701  0.493
2015 Zhang J, Barz B, Zhang J, Xu D, Kosztin I. Selective refinement and selection of near-native models in protein structure prediction. Proteins. 83: 1823-35. PMID 26214389 DOI: 10.1002/Prot.24866  0.674
2014 Barz B, Urbanc B. Minimal model of self-assembly: emergence of diversity and complexity. The Journal of Physical Chemistry. B. 118: 3761-70. PMID 24571643 DOI: 10.1021/Jp412819J  0.394
2014 Barz B, Olubiyi OO, Strodel B. Early amyloid β-protein aggregation precedes conformational change. Chemical Communications (Cambridge, England). 50: 5373-5. PMID 24471163 DOI: 10.1039/C3Cc48704K  0.476
2014 Barz B, Wales DJ, Strodel B. A kinetic approach to the sequence-aggregation relationship in disease-related protein assembly. The Journal of Physical Chemistry. B. 118: 1003-11. PMID 24401100 DOI: 10.1021/Jp412648U  0.448
2014 Osborne KL, Barz B, Bachmann M, Strodel B. Thermodynamics of Protein Aggregation Physics Procedia. 53: 90-95. DOI: 10.1016/J.Phpro.2014.06.032  0.467
2012 Flenner E, Janosi L, Barz B, Neagu A, Forgacs G, Kosztin I. Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 85: 031907. PMID 22587123 DOI: 10.1103/Physreve.85.031907  0.751
2012 Barz B, Urbanc B. Dimer formation enhances structural differences between amyloid β-protein (1-40) and (1-42): an explicit-solvent molecular dynamics study. Plos One. 7: e34345. PMID 22509291 DOI: 10.1371/Journal.Pone.0034345  0.505
2012 Zhang J, He Z, Wang Q, Barz B, Kosztin I, Shang Y, Xu D. Prediction of protein tertiary structures using MUFOLD. Methods in Molecular Biology (Clifton, N.J.). 815: 3-13. PMID 22130979 DOI: 10.1007/978-1-61779-424-7_1  0.657
2012 Neagu A, Kosztin I, Jakab K, Barz B, Neagu M, Jamison R, Forgacs G. Computational modeling of tissue self-assembly Cell and Tissue Engineering. 2147483647: 251-272. DOI: 10.1007/978-3-642-21913-9_13  0.619
2011 Urbanc B, Barz B, Betnel M, Cruz L, Bitan G, Teplow DB. Structural Basis for Amyloid β-Protein Toxicity Inhibition: A Multiscale Computational Study Biophysical Journal. 100: 390a. DOI: 10.1016/J.Bpj.2010.12.2317  0.493
2011 Barz B, Kepics C, Ferrone FA, Urbanc B. Minimalistic Approach to Protein Assembly Modelling/Application to the Sickle Cell Hemoglobin Polymerization Biophysical Journal. 100: 389a. DOI: 10.1016/J.Bpj.2010.12.2314  0.427
2010 Neagu A, Mironov V, Kosztin I, Barz B, Neagu M, Moreno-Rodriguez RA, Markwald RR, Forgacs G. Computational modeling of epithelial-mesenchymal transformations. Bio Systems. 100: 23-30. PMID 20005917 DOI: 10.1016/J.Biosystems.2009.12.004  0.633
2010 Zhang J, Wang Q, Barz B, He Z, Kosztin I, Shang Y, Xu D. MUFOLD: A new solution for protein 3D structure prediction. Proteins. 78: 1137-52. PMID 19927325 DOI: 10.1002/Prot.22634  0.672
2010 Barz B, Wang Q, Zhang J, He Z, Xu D, Shang Y, Kosztin I. Selection of Near-Native Protein Structures by Means of Molecular Dynamics Simulations Biophysical Journal. 98: 196a. DOI: 10.1016/J.Bpj.2009.12.1044  0.681
2009 Neagu A, Flenner E, Barz B, Norotte C, Marga F, Jakab K, Kosztin I, Forgacs G. Towards In Silico Bioprinting Biophysical Journal. 96: 633a-634a. DOI: 10.1016/J.Bpj.2008.12.3351  0.68
2009 Barz B, Das J, Flenner E, Marga F, Norote C, Forgacs G, Kosztin I. Cellular Particle Dynamics Simulation Of Bioprinted 3d Tissue Constructs Biophysical Journal. 96: 306a. DOI: 10.1016/J.Bpj.2008.12.1527  0.688
2008 Barz B, Wong TC, Kosztin I. Membrane curvature and surface area per lipid affect the conformation and oligomeric state of HIV-1 fusion peptide: a combined FTIR and MD simulation study. Biochimica Et Biophysica Acta. 1778: 945-53. PMID 18177732 DOI: 10.1016/J.Bbamem.2007.11.014  0.647
2006 Kosztin I, Barz B, Janosi L. Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality. The Journal of Chemical Physics. 124: 64106. PMID 16483195 DOI: 10.1063/1.2166379  0.705
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