| Year |
Citation |
Score |
| 2023 |
Fizari M, Keller N, Jardine PJ, Smith DE. Role of DNA-DNA sliding friction and nonequilibrium dynamics in viral genome ejection and packaging. Nucleic Acids Research. PMID 37449417 DOI: 10.1093/nar/gkad582 |
0.737 |
|
| 2023 |
Fizari M, Keller N, Jardine PJ, Smith DE. Role of DNA-DNA sliding friction and non-equilibrium dynamics in viral genome ejection and packaging. Biorxiv : the Preprint Server For Biology. PMID 37066220 DOI: 10.1101/2023.04.03.535472 |
0.737 |
|
| 2021 |
Mo Y, Fizari M, Koharchik K, Smith DE. Determining Trap Compliances, Microsphere Size Variations, and Response Linearities in Single DNA Molecule Elasticity Measurements with Optical Tweezers. Frontiers in Molecular Biosciences. 8: 605102. PMID 33829038 DOI: 10.3389/fmolb.2021.605102 |
0.453 |
|
| 2020 |
Mo Y, Keller N, delToro D, Ananthaswamy N, Harvey SC, Rao VB, Smith DE. Function of a viral genome packaging motor from bacteriophage T4 is insensitive to DNA sequence. Nucleic Acids Research. PMID 33119757 DOI: 10.1093/nar/gkaa875 |
0.842 |
|
| 2020 |
Ordyan M, Fizari M, Chien J, Rawson B, Smith DE. Regulation of Viral Packaging Motors Grip on DNA and Discovery of a DNA “End-Clamp” Mechanism Biophysical Journal. 118: 75a. DOI: 10.1016/J.Bpj.2019.11.584 |
0.863 |
|
| 2020 |
Fizari M, Smith DE. Restricted Mobility of DNA Packaged in Phage PHI29 Viral Proheads Assessed by Single-Molecule Optical Tweezers Measurements of DNA Exit Biophysical Journal. 118: 63a. DOI: 10.1016/J.Bpj.2019.11.520 |
0.543 |
|
| 2020 |
Mo Y, Keller NA, Smith DE. High GC Content DNA does not Affect Phage T4 DNA Packaging -- Test of a Scrunchworm Model for Packaging Motor Function Biophysical Journal. 118: 188a. DOI: 10.1016/J.Bpj.2019.11.1144 |
0.735 |
|
| 2019 |
delToro D, Ortiz D, Ordyan M, Pajak J, Sippy J, Catala A, Oh CS, Vu A, Arya G, Smith DE, Catalano CE, Feiss M. Functional Dissection of a Viral DNA Packaging Machine's Walker B Motif. Journal of Molecular Biology. PMID 31473160 DOI: 10.1016/J.Jmb.2019.08.012 |
0.833 |
|
| 2019 |
Smith DE, Chu S. Response of flexible polymers to a sudden elongational flow Science (New York, N.Y.). 281: 1335-40. PMID 9721095 DOI: 10.1126/Science.281.5381.1335 |
0.48 |
|
| 2018 |
Ordyan M, Alam I, Mahalingam M, Rao VB, Smith DE. Nucleotide-dependent DNA gripping and an end-clamp mechanism regulate the bacteriophage T4 viral packaging motor. Nature Communications. 9: 5434. PMID 30575768 DOI: 10.1038/S41467-018-07834-2 |
0.858 |
|
| 2018 |
Ortiz D, delToro D, Ordyan M, Pajak J, Sippy J, Catala A, Oh CS, Vu A, Arya G, Feiss M, Smith DE, Catalano CE. Evidence that a catalytic glutamate and an 'Arginine Toggle' act in concert to mediate ATP hydrolysis and mechanochemical coupling in a viral DNA packaging motor. Nucleic Acids Research. PMID 30541105 DOI: 10.1093/Nar/Gky1217 |
0.831 |
|
| 2018 |
Keller N, delToro DJ, Smith DE. Single-Molecule Measurements of Motor-Driven Viral DNA Packaging in Bacteriophages Phi29, Lambda, and T4 with Optical Tweezers. Methods in Molecular Biology (Clifton, N.J.). 1805: 393-422. PMID 29971729 DOI: 10.1007/978-1-4939-8556-2_20 |
0.861 |
|
| 2018 |
delToro DJ, Smith DE. Measuring Unzipping and Rezipping of Single Long DNA Molecules with Optical Tweezers. Methods in Molecular Biology (Clifton, N.J.). 1805: 371-392. PMID 29971728 DOI: 10.1007/978-1-4939-8556-2_19 |
0.861 |
|
| 2018 |
Ordyan M, Smith DE, Rao VB, Alam I, Mahalingam M. Regulation of a Viral Packaging Motor's Grips on DNA Biophysical Journal. 114: 91a. DOI: 10.1016/J.Bpj.2017.11.542 |
0.847 |
|
| 2018 |
Smith DE, Ordyan M, delToro D, Sippy J, Feiss M. Insights on Viral DNA Packaging Motor Mechanisms from the Effects of Motor Residue Changes on Single-Molecule Packaging Dynamics Biophysical Journal. 114: 585a. DOI: 10.1016/J.Bpj.2017.11.3203 |
0.832 |
|
| 2017 |
Keller N, Berndsen ZT, Jardine PJ, Smith DE. Experimental comparison of forces resisting viral DNA packaging and driving DNA ejection. Physical Review. E. 95: 052408. PMID 28618627 DOI: 10.1103/Physreve.95.052408 |
0.857 |
|
| 2016 |
Keller N, Grimes S, Jardine PJ, Smith DE. Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging. Nature Physics. 12: 757-761. PMID 27540410 DOI: 10.1038/Nphys3740 |
0.761 |
|
| 2016 |
delToro D, Ortiz D, Ordyan M, Sippy J, Oh CS, Keller N, Feiss M, Catalano CE, Smith D. Walker-A motif acts to coordinate ATP hydrolysis with motor output in viral DNA packaging. Journal of Molecular Biology. PMID 27139643 DOI: 10.1016/J.Jmb.2016.04.029 |
0.833 |
|
| 2016 |
Keller N, Grimes S, Jardine PJ, Smith DE. Single DNA molecule jamming and history-dependent dynamics during motor-driven viral packaging Nature Physics. DOI: 10.1038/nphys3740 |
0.715 |
|
| 2015 |
Berndsen ZT, Keller N, Smith DE. Continuous allosteric regulation of a viral packaging motor by a sensor that detects the density and conformation of packaged DNA. Biophysical Journal. 108: 315-24. PMID 25606680 DOI: 10.1016/J.Bpj.2014.11.3469 |
0.838 |
|
| 2014 |
delToro D, Smith DE. Accurate measurement of force and displacement with optical tweezers using DNA molecules as metrology standards. Applied Physics Letters. 104: 143701. PMID 25316922 DOI: 10.1063/1.4871005 |
0.854 |
|
| 2014 |
Migliori AD, Smith DE, Arya G. Molecular interactions and residues involved in force generation in the T4 viral DNA packaging motor. Journal of Molecular Biology. 426: 4002-17. PMID 25311860 DOI: 10.1016/J.Jmb.2014.09.023 |
0.839 |
|
| 2014 |
Keller N, delToro D, Grimes S, Jardine PJ, Smith DE. Repulsive DNA-DNA interactions accelerate viral DNA packaging in phage Phi29. Physical Review Letters. 112: 248101. PMID 24996111 DOI: 10.1103/Physrevlett.112.248101 |
0.857 |
|
| 2014 |
Migliori AD, Keller N, Alam TI, Mahalingam M, Rao VB, Arya G, Smith DE. Evidence for an electrostatic mechanism of force generation by the bacteriophage T4 DNA packaging motor. Nature Communications. 5: 4173. PMID 24937091 DOI: 10.1038/Ncomms5173 |
0.834 |
|
| 2014 |
Berndsen ZT, Keller N, Grimes S, Jardine PJ, Smith DE. Nonequilibrium dynamics and ultraslow relaxation of confined DNA during viral packaging. Proceedings of the National Academy of Sciences of the United States of America. 111: 8345-50. PMID 24912187 DOI: 10.1073/Pnas.1405109111 |
0.872 |
|
| 2014 |
Chapman CD, Lee K, Henze D, Smith DE, Robertson-Anderson RM. Onset of non-continuum effects in microrheology of entangled polymer solutions Macromolecules. 47: 1181-1186. DOI: 10.1021/Ma401615M |
0.725 |
|
| 2013 |
Aad G, Abajyan T, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acharya BS, ... ... Smith D, et al. Measurement of the inclusive jet cross-section in pp collisions at [Formula: see text] and comparison to the inclusive jet cross-section at [Formula: see text] using the ATLAS detector. The European Physical Journal. C, Particles and Fields. 73: 2509. PMID 25904819 DOI: 10.1140/Epjc/S10052-013-2509-4 |
0.453 |
|
| 2013 |
Aad G, Abajyan T, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acerbi E, ... ... Smith D, et al. Jet energy resolution in proton-proton collisions at [Formula: see text] recorded in 2010 with the ATLAS detector. The European Physical Journal. C, Particles and Fields. 73: 2306. PMID 25814854 DOI: 10.1140/Epjc/S10052-013-2306-0 |
0.454 |
|
| 2013 |
Aad G, Abajyan T, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acharya BS, Adamczyk L, ... ... Smith D, et al. Measurement of Z boson production in Pb-Pb collisions at sqrt[s(NN)]=2.76 TeV with the ATLAS detector. Physical Review Letters. 110: 022301. PMID 23383894 DOI: 10.1103/Physrevlett.110.022301 |
0.46 |
|
| 2013 |
Aad G, Abajyan T, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdinov O, Aben R, Abi B, Abolins M, Abouzeid OS, Abramowicz H, Abreu H, Acharya BS, Adamczyk L, ... ... Smith D, et al. Search for dark matter candidates and large extra dimensions in events with a photon and missing transverse momentum in pp collision data at sqrt[s]=7 TeV with the ATLAS detector. Physical Review Letters. 110: 011802. PMID 23383779 DOI: 10.1103/Physrevlett.110.011802 |
0.473 |
|
| 2013 |
Berndsen ZT, Keller N, Smith DE. Evidence for non-equilibrium dynamics in viral DNA packaging from optical tweezers measurements Proceedings of Spie - the International Society For Optical Engineering. 8810. DOI: 10.1117/12.2027187 |
0.864 |
|
| 2013 |
Keller NA, Migliori AD, Arya G, Rao VB, Smith DE. Testing a structural model for viral DNA packaging motor function by optical tweezers measurements, site directed mutagenesis, and molecular dynamics calculations Proceedings of Spie - the International Society For Optical Engineering. 8810. DOI: 10.1117/12.2027158 |
0.847 |
|
| 2013 |
Migliori A, Kung S, Wang D, Smith DE. Direct measurement of formation of loops in DNA by a human tumor suppressor protein Proceedings of Spie - the International Society For Optical Engineering. 8810. DOI: 10.1117/12.2027153 |
0.807 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, ... ... Smith D, et al. Search for lepton flavour violation in the eμ continuum with the ATLAS detector in [Formula: see text]pp collisions at the LHC. The European Physical Journal. C, Particles and Fields. 72: 2040. PMID 25814838 DOI: 10.1140/Epjc/S10052-012-2040-Z |
0.454 |
|
| 2012 |
Aad G, Abajyan T, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdinov O, Aben R, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, ... ... Smith D, et al. Search for magnetic monopoles in sqrt[s]=7 TeV pp collisions with the ATLAS detector. Physical Review Letters. 109: 261803. PMID 23368550 DOI: 10.1103/Physrevlett.109.261803 |
0.449 |
|
| 2012 |
Aad G, Abajyan T, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdinov O, Aben R, Abi B, Abolins M, Abouzeid OS, Abramowicz H, Abreu H, Acharya BS, Adamczyk L, ... ... Smith D, et al. Search for direct top squark pair production in final states with one isolated lepton, jets, and missing transverse momentum in sqrt[s] = 7 TeV pp collisions using 4.7 fb(-10 of ATLAS data. Physical Review Letters. 109: 211803. PMID 23215588 DOI: 10.1103/Physrevlett.109.211803 |
0.463 |
|
| 2012 |
Aad G, Abajyan T, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdinov O, Aben R, Abi B, Abolins M, Abouzeid OS, Abramowicz H, Abreu H, Acharya BS, Adamczyk L, ... ... Smith D, et al. Search for a supersymmetric partner to the top quark in final states with jets and missing transverse momentum at sqrt[s] = 7 TeV with the ATLAS detector. Physical Review Letters. 109: 211802. PMID 23215587 DOI: 10.1103/Physrevlett.109.211802 |
0.453 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, Adams DL, ... ... Smith D, et al. Determination of the strange-quark density of the proton from ATLAS measurements of the W→ℓν and Z→ℓℓ cross sections. Physical Review Letters. 109: 012001. PMID 23031098 DOI: 10.1103/Physrevlett.109.012001 |
0.432 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdinov O, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, Adams DL, ... ... Smith D, et al. Search for supersymmetry in events with three leptons and missing transverse momentum in √[s]=7 TeV pp collisions with the ATLAS detector. Physical Review Letters. 108: 261804. PMID 23004965 DOI: 10.1103/Physrevlett.108.261804 |
0.465 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, Adams DL, ... ... Smith D, et al. Search for pair production of a heavy up-type quark decaying to a W boson and a b quark in the lepton + jets channel with the ATLAS detector. Physical Review Letters. 108: 261802. PMID 23004963 DOI: 10.1103/Physrevlett.108.261802 |
0.457 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abouzeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, Adams DL, ... ... Smith D, et al. Search for a light Higgs boson decaying to long-lived weakly interacting particles in proton-proton collisions at sqrt[s] = 7 TeV with the ATLAS detector. Physical Review Letters. 108: 251801. PMID 23004585 DOI: 10.1103/Physrevlett.108.251801 |
0.452 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, ... ... Smith D, et al. Search for gluinos in events with two same-sign leptons, jets, and missing transverse momentum with the ATLAS detector in pp collisions at sqrt[s]=7 TeV. Physical Review Letters. 108: 241802. PMID 23004260 DOI: 10.1103/Physrevlett.108.241802 |
0.457 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abouzeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, ... ... Smith D, et al. Observation of spin correlation in tt¯ events from pp collisions at √s=7 TeV using the ATLAS detector. Physical Review Letters. 108: 212001. PMID 23003244 DOI: 10.1103/Physrevlett.108.212001 |
0.44 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, Adams DL, Addy TN, ... ... Smith D, et al. Search for production of resonant states in the photon-jet mass distribution using pp collisions at √s=7 TeV collected by the ATLAS detector. Physical Review Letters. 108: 211802. PMID 23003240 DOI: 10.1103/Physrevlett.108.211802 |
0.451 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdel Khalek S, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abouzeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, ... ... Smith D, et al. Search for tb resonances in proton-proton collisions at √s=7 TeV with the ATLAS detector. Physical Review Letters. 109: 081801. PMID 23002739 DOI: 10.1103/Physrevlett.109.081801 |
0.449 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, Adams DL, ... ... Smith D, et al. Search for down-type fourth generation quarks with the ATLAS detector in events with one lepton and hadronically decaying W bosons. Physical Review Letters. 109: 032001. PMID 22861838 DOI: 10.1103/Physrevlett.109.032001 |
0.453 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, AbouZeid OS, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, Adams DL, ... ... Smith D, et al. Search for scalar bottom quark pair production with the ATLAS detector in pp collisions at sqrt[s]=7 TeV. Physical Review Letters. 108: 181802. PMID 22681057 DOI: 10.1103/Physrevlett.108.181802 |
0.455 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adamczyk L, Adams DL, Addy TN, ... ... Smith D, et al. Search for the Higgs boson in the H→WW(*)→ℓ(+)νℓ(-)ν decay channel in pp collisions at √s=7 TeV with the ATLAS detector. Physical Review Letters. 108: 111802. PMID 22540462 DOI: 10.1103/Physrevlett.108.111802 |
0.447 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Smith D, et al. Search for new phenomena in tt events with large missing transverse momentum in proton-proton collisions at sqrt[s] = 7 TeV with the ATLAS detector. Physical Review Letters. 108: 041805. PMID 22400827 DOI: 10.1103/Physrevlett.108.041805 |
0.463 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Smith D, et al. Measurement of the ZZ production cross section and limits on anomalous neutral triple gauge couplings in proton-proton collisions at sqrt[s] = 7 TeV with the ATLAS detector. Physical Review Letters. 108: 041804. PMID 22400826 DOI: 10.1103/Physrevlett.108.041804 |
0.456 |
|
| 2012 |
Chemla YR, Smith DE. Single-molecule studies of viral DNA packaging. Advances in Experimental Medicine and Biology. 726: 549-84. PMID 22297530 DOI: 10.1007/978-1-4614-0980-9_24 |
0.72 |
|
| 2012 |
Allemand JF, Maier B, Smith DE. Molecular motors for DNA translocation in prokaryotes. Current Opinion in Biotechnology. 23: 503-9. PMID 22226958 DOI: 10.1016/J.Copbio.2011.12.023 |
0.565 |
|
| 2012 |
delToro DJ, Smith DE. Mechanism of Termination of Bacteriophage DNA Packaging Investigated with Optical Tweezers Proceedings of Spie. 8458. DOI: 10.1117/12.930425 |
0.568 |
|
| 2012 |
Migliori A, Arya G, Smith DE. Experimental and computational studies on the DNA translocation mechanism of the T4 viral packaging motor Proceedings of Spie - the International Society For Optical Engineering. 8458. DOI: 10.1117/12.930390 |
0.85 |
|
| 2012 |
Chapman CD, Shanbhag S, Smith DE, Robertson-Anderson RM. Complex effects of molecular topology on diffusion in entangled biopolymer blends Soft Matter. 8: 9177-9182. DOI: 10.1039/C2Sm26279G |
0.741 |
|
| 2012 |
Smith DE. Probing Functional Motifs and Regions in the Phage Lambda DNA Packaging Motor by Mutagenesis and Single-Molecule Optical Tweezers Measurements Biophysical Journal. 102: 642a. DOI: 10.1016/J.Bpj.2011.11.3496 |
0.562 |
|
| 2012 |
Berndsen Z, Smith D. Single Molecule Studies of Bacteriophage phi29 DNA Terminal Protein Interactions and their Role in DNA Packaging Biophysical Journal. 102: 642a. DOI: 10.1016/J.Bpj.2011.11.3494 |
0.829 |
|
| 2012 |
Chapman CD, Shanbhag S, Smith DE, Robertson-Anderson RM. Single-Molecule Studies of DNA Self-Diffusion in Entangled Blends of Linear and Circular DNA Biophysical Journal. 102: 39a. DOI: 10.1016/J.Bpj.2011.11.243 |
0.733 |
|
| 2012 |
Keller N, Smith DE. Single molecule studies of the effect of spermidine on DNA mechanics and viral DNA packaging Proceedings of Spie - the International Society For Optical Engineering. 8458. DOI: 10.1016/J.Bpj.2011.11.1512 |
0.743 |
|
| 2012 |
Keller NA, Smith DE. Single Molecule Studies of the Effect of Spermidine on DNA Mechanics and Viral DNA Packaging Biophysical Journal. 102: 274a. DOI: 10.1016/j.bpj.2011.11.1512 |
0.72 |
|
| 2011 |
Smith DE. Single-molecule studies of viral DNA packaging. Current Opinion in Virology. 1: 134-41. PMID 22440623 DOI: 10.1016/J.Coviro.2011.05.023 |
0.549 |
|
| 2011 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Smith D, et al. Search for dilepton resonances in pp collisions at √s=7 TeV with the ATLAS detector. Physical Review Letters. 107: 272002. PMID 22243306 DOI: 10.1103/Physrevlett.107.272002 |
0.448 |
|
| 2011 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Smith D, et al. Search for the Higgs boson in the H→WW→lνjj decay channel in pp collisions at √s=7 TeV with the ATLAS detector. Physical Review Letters. 107: 231801. PMID 22182080 DOI: 10.1103/Physrevlett.107.231801 |
0.448 |
|
| 2011 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... Smith D, et al. Search for a standard model Higgs boson in the H→ZZ→ℓ(+)ℓ(-)νν decay channel with the ATLAS detector. Physical Review Letters. 107: 221802. PMID 22182021 DOI: 10.1103/Physrevlett.107.221802 |
0.455 |
|
| 2011 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Smith D, et al. Measurement of the W+ W- cross section in sqrt(s) = 7 TeV pp collisions with ATLAS. Physical Review Letters. 107: 041802. PMID 21866993 DOI: 10.1103/Physrevlett.107.041802 |
0.446 |
|
| 2011 |
Torigoe SE, Urwin DL, Ishii H, Smith DE, Kadonaga JT. Identification of a rapidly formed nonnucleosomal histone-DNA intermediate that is converted into chromatin by ACF. Molecular Cell. 43: 638-48. PMID 21855802 DOI: 10.1016/J.Molcel.2011.07.017 |
0.445 |
|
| 2011 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Smith D, et al. Search for a heavy particle decaying into an electron and a muon with the ATLAS detector in sqrt[s] = 7 TeV pp collisions at the LHC. Physical Review Letters. 106: 251801. PMID 21770629 DOI: 10.1103/Physrevlett.106.251801 |
0.462 |
|
| 2011 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Smith D, et al. Measurement of dijet azimuthal decorrelations in pp collisions at sqrt(s)=7 TeV. Physical Review Letters. 106: 172002. PMID 21635030 DOI: 10.1103/Physrevlett.106.172002 |
0.476 |
|
| 2011 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Smith D, et al. Search for diphoton events with large missing transverse energy in 7 TeV proton-proton collisions with the ATLAS detector. Physical Review Letters. 106: 121803. PMID 21517301 DOI: 10.1103/Physrevlett.106.121803 |
0.463 |
|
| 2011 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, Adelman J, ... ... Smith D, et al. Measurement of the jet fragmentation function and transverse profile in proton-proton collisions at a center-of-mass energy of 7 TeV with the ATLAS detector European Physical Journal C. 71: 1795-1810. DOI: 10.1140/Epjc/S10052-011-1795-Y |
0.301 |
|
| 2010 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Smith D, et al. Observation of a centrality-dependent dijet asymmetry in lead-lead collisions at sqrt[S(NN)] =2.76 TeV with the ATLAS detector at the LHC. Physical Review Letters. 105: 252303. PMID 21231581 DOI: 10.1103/Physrevlett.105.252303 |
0.466 |
|
| 2010 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Ackers M, Adams DL, Addy TN, ... ... Smith D, et al. Search for new particles in two-jet final states in 7 TeV proton-proton collisions with the ATLAS detector at the LHC. Physical Review Letters. 105: 161801. PMID 21230962 DOI: 10.1103/Physrevlett.105.161801 |
0.44 |
|
| 2010 |
Tsay JM, Sippy J, DelToro D, Andrews BT, Draper B, Rao V, Catalano CE, Feiss M, Smith DE. Mutations altering a structurally conserved loop-helix-loop region of a viral packaging motor change DNA translocation velocity and processivity. The Journal of Biological Chemistry. 285: 24282-9. PMID 20525695 DOI: 10.1074/Jbc.M110.129395 |
0.817 |
|
| 2010 |
Meluzzi D, Smith DE, Arya G. Biophysics of knotting. Annual Review of Biophysics. 39: 349-66. PMID 20192771 DOI: 10.1146/Annurev.Biophys.093008.131412 |
0.354 |
|
| 2009 |
Tsay JM, Sippy J, Feiss M, Smith DE. The Q motif of a viral packaging motor governs its force generation and communicates ATP recognition to DNA interaction. Proceedings of the National Academy of Sciences of the United States of America. 106: 14355-60. PMID 19706522 DOI: 10.1073/Pnas.0904364106 |
0.814 |
|
| 2009 |
Smith DE, Tsay JM. Single-Molecule Studies of Viral DNA Packaging with Optical Tweezers: Molecular Motor Function and DNA Confinement Biophysical Journal. 96: 15a-16a. DOI: 10.1016/J.Bpj.2008.12.982 |
0.841 |
|
| 2008 |
Rickgauer JP, Fuller DN, Grimes S, Jardine PJ, Anderson DL, Smith DE. Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29. Biophysical Journal. 94: 159-67. PMID 17827233 DOI: 10.1529/Biophysj.107.104612 |
0.862 |
|
| 2008 |
Tsay JM, Sippy J, Feiss M, Smith DE. Mechanism of a viral DNA packaging motor studied by characterization of biochemical mutants via optical tweezers measurements Proceedings of Spie - the International Society For Optical Engineering. 7038. DOI: 10.1117/12.797139 |
0.795 |
|
| 2007 |
Fuller DN, Raymer DM, Kottadiel VI, Rao VB, Smith DE. Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability. Proceedings of the National Academy of Sciences of the United States of America. 104: 16868-73. PMID 17942694 DOI: 10.1073/Pnas.0704008104 |
0.87 |
|
| 2007 |
Robertson RM, Smith DE. Direct measurement of the intermolecular forces confining a single molecule in an entangled polymer solution. Physical Review Letters. 99: 126001. PMID 17930521 DOI: 10.1103/Physrevlett.99.126001 |
0.664 |
|
| 2007 |
Fuller DN, Raymer DM, Rickgauer JP, Robertson RM, Catalano CE, Anderson DL, Grimes S, Smith DE. Measurements of single DNA molecule packaging dynamics in bacteriophage lambda reveal high forces, high motor processivity, and capsid transformations. Journal of Molecular Biology. 373: 1113-22. PMID 17919653 DOI: 10.1016/J.Jmb.2007.09.011 |
0.856 |
|
| 2007 |
Raymer DM, Smith DE. Spontaneous knotting of an agitated string. Proceedings of the National Academy of Sciences of the United States of America. 104: 16432-7. PMID 17911269 DOI: 10.1073/Pnas.0611320104 |
0.732 |
|
| 2007 |
Fuller DN, Rickgauer JP, Jardine PJ, Grimes S, Anderson DL, Smith DE. Ionic effects on viral DNA packaging and portal motor function in bacteriophage phi 29. Proceedings of the National Academy of Sciences of the United States of America. 104: 11245-50. PMID 17556543 DOI: 10.1073/Pnas.0701323104 |
0.861 |
|
| 2007 |
Robertson RM, Smith DE. Strong effects of molecular topology on diffusion of entangled DNA molecules. Proceedings of the National Academy of Sciences of the United States of America. 104: 4824-7. PMID 17360350 DOI: 10.1073/Pnas.0700137104 |
0.683 |
|
| 2007 |
Raymer DM, Smith DE. A simple system for staining protein and nucleic acid electrophoresis gels. Electrophoresis. 28: 746-8. PMID 17265540 DOI: 10.1002/Elps.200600325 |
0.768 |
|
| 2007 |
Robertson RM, Smith DE. Direct measurement of the intermolecular forces confining a single entangled DNA molecule Proceedings of Spie - the International Society For Optical Engineering. 6644. DOI: 10.1117/12.739632 |
0.712 |
|
| 2007 |
Smith DE, Fuller DN, Raymer DM, Rickgauer P, Grimes S, Jardine PJ, Anderson DL, Catalano CE, Kottadiel V, Rao VB. Studies of viral DNA packaging motors with optical tweezers: A comparison of motor function in bacteriophages Φ29, λ, and T4 Proceedings of Spie - the International Society For Optical Engineering. 6644. DOI: 10.1117/12.739629 |
0.833 |
|
| 2007 |
Robertson RM, Smith DE. Direct measurement of the confining forces imposed on a single molecule in a concentrated solution of circular polymers Macromolecules. 40: 8737-8741. DOI: 10.1021/Ma071440E |
0.704 |
|
| 2007 |
Robertson RM, Smith DE. Self-diffusion of entangled linear and circular DNA molecules: Dependence on length and concentration Macromolecules. 40: 3373-3377. DOI: 10.1021/Ma070051H |
0.623 |
|
| 2006 |
Gemmen GJ, Millin R, Smith DE. Dynamics of single DNA looping and cleavage by Sau3AI and effect of tension applied to the DNA. Biophysical Journal. 91: 4154-65. PMID 16963513 DOI: 10.1529/Biophysj.106.088518 |
0.841 |
|
| 2006 |
Rickgauer JP, Fuller DN, Smith DE. DNA as a metrology standard for length and force measurements with optical tweezers. Biophysical Journal. 91: 4253-7. PMID 16963512 DOI: 10.1529/Biophysj.106.089524 |
0.832 |
|
| 2006 |
Gemmen GJ, Millin R, Smith DE. Tension-dependent DNA cleavage by restriction endonucleases: two-site enzymes are "switched off" at low force. Proceedings of the National Academy of Sciences of the United States of America. 103: 11555-60. PMID 16868081 DOI: 10.1073/Pnas.0604463103 |
0.828 |
|
| 2006 |
Gemmen GJ, Millin R, Smith DE. DNA looping by two-site restriction endonucleases: heterogeneous probability distributions for loop size and unbinding force. Nucleic Acids Research. 34: 2864-77. PMID 16723432 DOI: 10.1093/Nar/Gkl382 |
0.837 |
|
| 2006 |
Robertson RM, Laib S, Smith DE. Diffusion of isolated DNA molecules: dependence on length and topology. Proceedings of the National Academy of Sciences of the United States of America. 103: 7310-4. PMID 16648255 DOI: 10.1073/Pnas.0601903103 |
0.816 |
|
| 2006 |
Fuller DN, Gemmen GJ, Rickgauer JP, Dupont A, Millin R, Recouvreux P, Smith DE. A general method for manipulating DNA sequences from any organism with optical tweezers. Nucleic Acids Research. 34: e15. PMID 16452295 DOI: 10.1093/Nar/Gnj016 |
0.829 |
|
| 2006 |
Rickgauer JP, Fuller DN, Hu B, Grimes S, Jardine PJ, Anderson DL, Smith DE. Initiation of bacteriophage ø29 DNA packaging studied by optical tweezers manipulation of single DNA molecules Proceedings of Spie - the International Society For Optical Engineering. 6326. DOI: 10.1117/12.682101 |
0.87 |
|
| 2006 |
Fuller DN, Rickgauer JP, Grimes S, Jardine PJ, Anderson DL, Smith DE. Dependence of bacteriophage ø29 DNA packaging on ionic conditions studied by optical tweezers manipulation of single DNA molecules Proceedings of Spie - the International Society For Optical Engineering. 6326. DOI: 10.1117/12.682097 |
0.866 |
|
| 2006 |
Rickgauer JP, Fuller DN, Smith DE. Calibration and performance of dual-beam force-measuring optical tweezers Proceedings of Spie - the International Society For Optical Engineering. 6326. DOI: 10.1117/12.681509 |
0.82 |
|
| 2006 |
Smith DE, Gemmen GJ, Millin R. DNA looping and cleavage by restriction enzymes studied by manipulation of single DNA molecules with optical tweezers Proceedings of Spie. 6326: 632625. DOI: 10.1117/12.681504 |
0.853 |
|
| 2006 |
Laib S, Robertson RM, Smith DE. Preparation and characterization of a set of linear DNA molecules for polymer physics and rheology studies Macromolecules. 39: 4115-4119. DOI: 10.1021/Ma0601464 |
0.835 |
|
| 2005 |
Gemmen GJ, Sim R, Haushalter KA, Ke PC, Kadonaga JT, Smith DE. Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF. Journal of Molecular Biology. 351: 89-99. PMID 16002089 DOI: 10.1016/J.Jmb.2005.05.058 |
0.835 |
|
| 2005 |
Smith DE, Gemmen GJ, Millin R, Rickgauer JP, Schweitzer AL, Fuller DN. Using optical tweezers to study protein-DNA interactions Proceedings of Spie - the International Society For Optical Engineering. 5930: 1-10. DOI: 10.1117/12.618038 |
0.841 |
|
| 2001 |
Smith DE, Tans SJ, Smith SB, Grimes S, Anderson DL, Bustamante C. The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature. 413: 748-52. PMID 11607035 DOI: 10.1038/35099581 |
0.653 |
|
| 2001 |
Hur JS, Shaqfeh ESG, Babcock HP, Smith DE, Chu S. Dynamics of dilute and semidilute DNA solutions in the start-up of shear flow Journal of Rheology. 45: 421-450. DOI: 10.1122/1.1339246 |
0.781 |
|
| 2000 |
Babcock HP, Smith DE, Hur JS, Shaqfeh ES, Chu S. Relating the microscopic and macroscopic response of a polymeric fluid in a shearing flow. Physical Review Letters. 85: 2018-21. PMID 10970672 DOI: 10.1103/Physrevlett.85.2018 |
0.716 |
|
| 1999 |
Smith DE, Babcock HP, Chu S. Single-polymer dynamics in steady shear flow. Science (New York, N.Y.). 283: 1724-7. PMID 10073935 DOI: 10.1126/Science.283.5408.1724 |
0.712 |
|
| 1999 |
Larson RG, Hu H, Smith DE, Chu S. Brownian dynamics simulations of a DNA molecule in an extensional flow field Journal of Rheology. 43: 267-304. DOI: 10.1122/1.550991 |
0.553 |
|
| 1997 |
Perkins TT, Smith DE, Chu S. Single polymer dynamics in an elongational flow. Science (New York, N.Y.). 276: 2016-21. PMID 9197259 DOI: 10.1126/Science.276.5321.2016 |
0.647 |
|
| 1997 |
Larson RG, Perkins TT, Smith DE, Chu S. Hydrodynamics of a DNA molecule in a flow field Physical Review E. 55: 1794-1797. DOI: 10.1103/Physreve.55.1794 |
0.651 |
|
| 1996 |
Smith DE, Perkins TT, Chu S. Dynamical Scaling of DNA Diffusion Coefficients Macromolecules. 29: 1372-1373. DOI: 10.1021/Ma951455P |
0.678 |
|
| 1995 |
Smith DE, Perkins TT, Chu S. Self-diffusion of an entangled DNA molecule by reptation. Physical Review Letters. 75: 4146-4149. PMID 10059826 DOI: 10.1103/Physrevlett.75.4146 |
0.686 |
|
| 1995 |
Perkins TT, Smith DE, Larson RG, Chu S. Stretching of a single tethered polymer in a uniform flow. Science (New York, N.Y.). 268: 83-7. PMID 7701345 DOI: 10.1126/Science.7701345 |
0.663 |
|
| 1994 |
Perkins TT, Quake SR, Smith DE, Chu S. Relaxation of a single DNA molecule observed by optical microscopy. Science (New York, N.Y.). 264: 822-6. PMID 8171336 DOI: 10.1126/Science.8171336 |
0.741 |
|
| 1994 |
Perkins TT, Smith DE, Chu S. Direct observation of tube-like motion of a single polymer chain. Science (New York, N.Y.). 264: 819-22. PMID 8171335 DOI: 10.1126/Science.8171335 |
0.692 |
|
| 1992 |
Smith DE, Wu XZ, Libchaber A, Moses E, Witten T. Viscous finger narrowing at the coil-stretch transition in a dilute polymer solution. Physical Review. A. 45: 2165-2168. PMID 9907231 DOI: 10.1103/Physreva.45.R2165 |
0.507 |
|
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