Terence Tai-Li 'Terry' Hwa, PhD - Publications

Affiliations: 
Physics University of California, San Diego, La Jolla, CA 
Area:
quantitative biology, biological physics, statistical mechanics
Website:
https://matisse.ucsd.edu/principal-investigator-terry-hwa/

86 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Cremer J, Segota I, Yang CY, Arnoldini M, Sauls JT, Zhang Z, Gutierrez E, Groisman A, Hwa T. Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel. Proceedings of the National Academy of Sciences of the United States of America. PMID 27681630 DOI: 10.1073/pnas.1601306113  1
2014 Cheng CW, Niu B, Warren M, Pevny LH, Lovell-Badge R, Hwa T, Cheah KSE. Predicting the spatiotemporal dynamics of hair follicle patterns in the developing mouse Proceedings of the National Academy of Sciences of the United States of America. 111: 2596-2601. PMID 24550288 DOI: 10.1073/pnas.1313083111/-/DCSupplemental  1
2013 Morcos F, Jana B, Hwa T, Onuchic JN. Coevolutionary signals across protein lineages help capture multiple protein conformations. Proceedings of the National Academy of Sciences of the United States of America. 110: 20533-8. PMID 24297889 DOI: 10.1073/pnas.1315625110  1
2013 Morcos F, Jana B, Hwa T, Onuchic JN. Coevolutionary signals across protein lineages help capture multiple protein conformations. Proceedings of the National Academy of Sciences of the United States of America. 110: 20533-8. PMID 24297889 DOI: 10.1073/pnas.1315625110  1
2013 Deris JB, Kim M, Zhang Z, Okano H, Hermsen R, Groisman A, Hwa T. The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science (New York, N.Y.). 342: 1237435. PMID 24288338 DOI: 10.1126/science.1237435  1
2013 Deris JB, Kim M, Zhang Z, Okano H, Hermsen R, Groisman A, Hwa T. The innate growth bistability and fitness landscapes of antibiotic-resistant bacteria. Science (New York, N.Y.). 342: 1237435. PMID 24288338 DOI: 10.1126/science.1237435  1
2013 Klumpp S, Scott M, Pedersen S, Hwa T. Molecular crowding limits translation and cell growth Proceedings of the National Academy of Sciences of the United States of America. 110: 16754-16759. PMID 24082144 DOI: 10.1073/pnas.1310377110  1
2013 You C, Okano H, Hui S, Zhang Z, Kim M, Gunderson CW, Wang YP, Lenz P, Yan D, Hwa T. Coordination of bacterial proteome with metabolism by cyclic AMP signalling. Nature. 500: 301-6. PMID 23925119 DOI: 10.1038/nature12446  1
2013 You C, Okano H, Hui S, Zhang Z, Kim M, Gunderson CW, Wang YP, Lenz P, Yan D, Hwa T. Coordination of bacterial proteome with metabolism by cyclic AMP signalling. Nature. 500: 301-6. PMID 23925119 DOI: 10.1038/nature12446  1
2012 Kim M, Zhang Z, Okano H, Yan D, Groisman A, Hwa T. Need-based activation of ammonium uptake in Escherichia coli. Molecular Systems Biology. 8: 616. PMID 23010999 DOI: 10.1038/msb.2012.46  1
2012 Hermsen R, Deris JB, Hwa T. On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient Proceedings of the National Academy of Sciences of the United States of America. 109: 10775-10780. PMID 22711808 DOI: 10.1073/pnas.1117716109  1
2012 Hermsen R, Deris JB, Hwa T. On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient Proceedings of the National Academy of Sciences of the United States of America. 109: 10775-10780. PMID 22711808 DOI: 10.1073/pnas.1117716109  0.01
2012 Su?kowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN. Genomics-aided structure prediction. Proceedings of the National Academy of Sciences of the United States of America. 109: 10340-5. PMID 22691493 DOI: 10.1073/pnas.1207864109  1
2012 Su?kowska JI, Morcos F, Weigt M, Hwa T, Onuchic JN. Genomics-aided structure prediction. Proceedings of the National Academy of Sciences of the United States of America. 109: 10340-5. PMID 22691493 DOI: 10.1073/pnas.1207864109  1
2012 Fu X, Tang LH, Liu C, Huang JD, Hwa T, Lenz P. Stripe formation in bacterial systems with density-suppressed motility Physical Review Letters. 108. DOI: 10.1103/PhysRevLett.108.198102  1
2011 Morcos F, Pagnani A, Lunt B, Bertolino A, Marks DS, Sander C, Zecchina R, Onuchic JN, Hwa T, Weigt M. Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proceedings of the National Academy of Sciences of the United States of America. 108: E1293-301. PMID 22106262 DOI: 10.1073/pnas.1111471108  1
2011 Hao Y, Zhang ZJ, Erickson DW, Huang M, Huang Y, Li J, Hwa T, Shi H. Quantifying the sequence-function relation in gene silencing by bacterial small RNAs Proceedings of the National Academy of Sciences of the United States of America. 108: 12473-12478. PMID 21742981 DOI: 10.1073/pnas.1100432108  1
2010 Hermsen R, Hwa T. Sources and sinks: a stochastic model of evolution in heterogeneous environments. Physical Review Letters. 105: 248104. PMID 21231560  1
2010 Hermsen R, Hwa T. Sources and sinks: A stochastic model of evolution in heterogeneous environments Physical Review Letters. 105. DOI: 10.1103/PhysRevLett.105.248104  1
2009 Schug A, Weigt M, Onuchic JN, Hwa T, Szurmant H. High-resolution protein complexes from integrating genomic information with molecular simulation. Proceedings of the National Academy of Sciences of the United States of America. 106: 22124-9. PMID 20018738 DOI: 10.1073/pnas.0912100106  1
2009 Gerland U, Hwa T. Evolutionary selection between alternative modes of gene regulation Proceedings of the National Academy of Sciences of the United States of America. 106: 8841-8846. PMID 19470486 DOI: 10.1073/pnas.0808500106  1
2009 Weigt M, White RA, Szurmant H, Hoch JA, Hwa T. Identification of direct residue contacts in protein-protein interaction by message passing Proceedings of the National Academy of Sciences of the United States of America. 106: 67-72. PMID 19116270 DOI: 10.1073/pnas.0805923106  1
2008 Klumpp S, Hwa T. Growth-rate-dependent partitioning of RNA polymerases in bacteria Proceedings of the National Academy of Sciences of the United States of America. 105: 20245-20250. PMID 19073937 DOI: 10.1073/pnas.0804953105  1
2008 Klumpp S, Hwa T. Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination Proceedings of the National Academy of Sciences of the United States of America. 105: 18159-18164. PMID 19017803 DOI: 10.1073/pnas.0806084105  1
2008 Liu J, Desai A, Onuchic JN, Hwa T. An integrated mechanobiochemical feedback mechanism describes chromosome motility from prometaphase to anaphase in mitosis. Proceedings of the National Academy of Sciences of the United States of America. 105: 13752-7. PMID 18780795 DOI: 10.1073/pnas.0807007105  1
2008 Liu J, Desai A, Onuchic JN, Hwa T. An integrated mechanobiochemical feedback mechanism describes chromosome motility from prometaphase to anaphase in mitosis. Proceedings of the National Academy of Sciences of the United States of America. 105: 13752-7. PMID 18780795 DOI: 10.1073/pnas.0807007105  1
2008 Levine E, Zhang Z, Kuhlman T, Hwa T. Correction: Quantitative characteristics of gene regulation by small RNA (PLoS Biology (2007) 5, 9, (e229) DOI: 10.1371/journal.pbio.0050229) Plos Biology. 6: 0191. DOI: 10.1371/journal.pbio.0060005  1
2008 Levine E, Zhang Z, Kuhlman T, Hwa T. Correction: Quantitative characteristics of gene regulation by small RNA (PLoS Biology (2007) 5, 9, (e229) DOI: 10.1371/journal.pbio.0050229) Plos Biology. 6: 0191. DOI: 10.1371/journal.pbio.0060005  1
2007 Fritz G, Buchler NE, Hwa T, Gerland U. Designing sequential transcription logic: a simple genetic circuit for conditional memory. Systems and Synthetic Biology. 1: 89-98. PMID 19003438 DOI: 10.1007/s11693-007-9006-8  1
2007 Fritz G, Buchler NE, Hwa T, Gerland U. Designing sequential transcription logic: a simple genetic circuit for conditional memory. Systems and Synthetic Biology. 1: 89-98. PMID 19003438 DOI: 10.1007/s11693-007-9006-8  1
2007 Liu J, Desai A, Onuchic JN, Hwa T. A mechanobiochemical mechanism for monooriented chromosome oscillation in mitosis. Proceedings of the National Academy of Sciences of the United States of America. 104: 16104-9. PMID 17911248 DOI: 10.1073/pnas.0707689104  1
2007 Levine E, Zhang Z, Kuhlman T, Hwa T. Quantitative characteristics of gene regulation by small RNA. Plos Biology. 5: e229. PMID 17713988 DOI: 10.1371/journal.pbio.0050229  1
2007 Levine E, Hwa T. Stochastic fluctuations in metabolic pathways. Proceedings of the National Academy of Sciences of the United States of America. 104: 9224-9. PMID 17517669 DOI: 10.1073/pnas.0610987104  1
2007 Kuhlman T, Zhang Z, Saier MH, Hwa T. Combinatorial transcriptional control of the lactose operon of Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 104: 6043-6048. PMID 17376875 DOI: 10.1073/pnas.0606717104  1
2007 Kuhlman T, Zhang Z, Saier MH, Hwa T. Combinatorial transcriptional control of the lactose operon of Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 104: 6043-6048. PMID 17376875 DOI: 10.1073/pnas.0606717104  0.01
2007 Scott M, Hwa T, Ingalls B. Deterministic characterization of stochastic genetic circuits Proceedings of the National Academy of Sciences of the United States of America. 104: 7402-7407. DOI: 10.1073/pnas.0610468104  1
2007 Scott M, Hwa T, Ingalls B. Deterministic characterization of stochastic genetic circuits Proceedings of the National Academy of Sciences of the United States of America. 104: 7402-7407. DOI: 10.1073/pnas.0610468104  1
2005 Buchler NE, Gerland U, Hwa T. Nonlinear protein degradation and the function of genetic circuits. Proceedings of the National Academy of Sciences of the United States of America. 102: 9559-64. PMID 15972813 DOI: 10.1073/pnas.0409553102  1
2005 Buchler NE, Gerland U, Hwa T. Nonlinear protein degradation and the function of genetic circuits. Proceedings of the National Academy of Sciences of the United States of America. 102: 9559-64. PMID 15972813 DOI: 10.1073/pnas.0409553102  1
2005 Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Kuhlman T, Phillips R. Transcriptional regulation by the numbers: applications. Current Opinion in Genetics & Development. 15: 125-35. PMID 15797195 DOI: 10.1016/j.gde.2005.02.006  1
2005 Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Phillips R. Transcriptional regulation by the numbers: models. Current Opinion in Genetics & Development. 15: 116-24. PMID 15797194 DOI: 10.1016/j.gde.2005.02.007  1
2004 Peng W, Levine H, Hwa T, Kessler DA. Analytical study of the effect of recombination on evolution via DNA shuffling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 69: 051911. PMID 15244851  1
2004 Peng W, Levine H, Hwa T, Kessler DA. Analytical study of the effect of recombination on evolution via DNA shuffling Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 69: 051911-1-051911-15.  1
2003 Buchler NE, Gerland U, Hwa T. On schemes of combinatorial transcription logic. Proceedings of the National Academy of Sciences of the United States of America. 100: 5136-41. PMID 12702751 DOI: 10.1073/pnas.0930314100  1
2003 Hwa T, Marinari E, Sneppen K, Tang Lh. Localization of denaturation bubbles in random DNA sequences Proceedings of the National Academy of Sciences of the United States of America. 100: 4411-4416. PMID 12672955 DOI: 10.1073/pnas.0736291100  1
2003 Peng W, Gerland U, Hwa T, Levine H. Dynamics of competitive evolution on a smooth landscape. Physical Review Letters. 90: 088103. PMID 12633464  1
2003 Peng W, Gerland U, Hwa T, Levine H. Dynamics of competitive evolution on a smooth landscape Physical Review Letters. 90: 088103/1-088103/4.  1
2003 Peng W, Gerland U, Hwa T, Levine H. Dynamics of competitive evolution on a smooth landscape Physical Review Letters. 90: 088103/1-088103/4.  1
2002 Gerland U, Moroz JD, Hwa T. Physical constraints and functional characteristics of transcription factor-DNA interaction Proceedings of the National Academy of Sciences of the United States of America. 99: 12015-12020. PMID 12218191 DOI: 10.1073/pnas.192693599  1
2002 Bundschuh R, Hwa T. Statistical mechanics of secondary structures formed by random RNA sequences. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 031903. PMID 11909105 DOI: 10.1103/PhysRevE.65.031903  1
1999 Boghosian BM, Chow CC, Hwa T. Hydrodynamics of the Kuramoto-Sivashinsky Equation in Two Dimensions Physical Review Letters. 83: 5262-5265.  1
1999 Zeng C, Leath PL, Hwa T. Thermodynamics of Mesoscopic Vortex Systems in 1 + 1 Dimensions Physical Review Letters. 83: 4860-4863.  1
1999 Bundschuh R, Hwa T. RNA secondary structure formation: A solvable model of heteropolymer folding Physical Review Letters. 83: 1479-1482.  1
1998 Cule D, Hwa T. Polymer reptation in disordered media Physical Review Letters. 80: 3145-3148.  1
1998 Cule D, Hwa T. Static and dynamic properties of inhomogeneous elastic media on disordered substrate Physical Review B - Condensed Matter and Materials Physics. 57: 8235-8253.  1
1997 Cule D, Hwa T. Denaturation of heterogeneous DNA Physical Review Letters. 79: 2375-2378.  1
1997 Kierfeld J, Nattermann T, Hwa T. Topological order in the vortex-glass phase of high-temperature superconductors Physical Review B - Condensed Matter and Materials Physics. 55: 626-629.  1
1996 Kierfeld J, Hwa T. Interacting Arrays of Lines and Steps in Random Media. Physical Review Letters. 77: 4233-4236. PMID 10062482  1
1996 Cule D, Hwa T. Tribology of Sliding Elastic Media. Physical Review Letters. 77: 278-281. PMID 10062411  1
1996 Hwa T, Lässig M. Similarity detection and localization. Physical Review Letters. 76: 2591-2594. PMID 10060738  1
1996 Frey E, Täuber UC, Hwa T. Mode-coupling and renormalization group results for the noisy Burgers equation. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 53: 4424-4438. PMID 9964774  1
1995 Hwa T, Nattermann T. Disorder-induced depinning transition. Physical Review. B, Condensed Matter. 51: 455-469. PMID 9977107 DOI: 10.1103/PhysRevB.51.455  1
1994 Hwa T, Kardar M, Paczuski M. Hwa, Kardar, and Paczuski reply. Physical Review Letters. 72: 785. PMID 10056526  1
1994 Batrouni GG, Hwa T. Dynamic and static properties of the randomly pinned planar flux array. Physical Review Letters. 72: 4133-4136. PMID 10056390 DOI: 10.1103/PhysRevLett.72.4133  1
1994 Hwa T, Fisher DS. Vortex glass phase and universal susceptibility variations in planar arrays of flux lines. Physical Review Letters. 72: 2466-2469. PMID 10055887 DOI: 10.1103/PhysRevLett.72.2466  1
1994 Hwa T, Fisher DS. Anomalous fluctuations of directed polymers in random media. Physical Review. B, Condensed Matter. 49: 3136-3154. PMID 10011171 DOI: 10.1103/PhysRevB.49.3136  1
1994 Hwa T, Kardar M, Paczuski M. Hwa, Kardar, and Paczuski reply [3] Physical Review Letters. 72: 785. DOI: 10.1103/PhysRevLett.72.785  1
1993 Hwa T, Le Doussal P, Nelson DR, Vinokur VM. Flux pinning and forced vortex entanglement by splayed columnar defects. Physical Review Letters. 71: 3545-3548. PMID 10055004 DOI: 10.1103/PhysRevLett.71.3545  1
1993 Hwa T, Nelson DR, Vinokur VM. Flux-line pinning by competing disorders. Physical Review. B, Condensed Matter. 48: 1167-1174. PMID 10007978 DOI: 10.1103/PhysRevB.48.1167  1
1993 Hwa T, Nattermann T. Comment on ''Random disorder in a model vortex liquid'' Physical Review Letters. 71: 2349. DOI: 10.1103/PhysRevLett.71.2349  1
1992 Paczuski M, Barma M, Majumdar SN, Hwa T. Fluctuations of a nonequililbrium interface. Physical Review Letters. 69: 2735. PMID 10046572  1
1992 Hwa T. Nonequilibrium dynamics of driven line liquids. Physical Review Letters. 69: 1552-1555. PMID 10046251 DOI: 10.1103/PhysRevLett.69.1552  1
1992 Hwa T, Kardar M. Avalanches, hydrodynamics, and discharge events in models of sandpiles. Physical Review. A. 45: 7002-7023. PMID 9906772 DOI: 10.1103/PhysRevA.45.7002  1
1992 Paczuski M, Barma M, Majumdar SN, Hwa T. Fluctuations of a nonequililbrium interface [2] Physical Review Letters. 69: 2735. DOI: 10.1103/PhysRevLett.69.2735  1
1992 Grinstein G, Hwa T, Jensen HJ. 1/f± noise in dissipative transport Physical Review A. 45: R559-R562. DOI: 10.1103/PhysRevA.45.R559  1
1992 Wen X, Garland CW, Hwa T, Kardar M, Kokufuta E, Li Y, Orkisz M, Tanaka T. Crumpled and collapsed conformations in graphite oxide membranes Nature. 355: 426-428.  1
1991 Hwa T, Kardar M, Paczuski M. Growth-induced roughening of crystalline facets. Physical Review Letters. 66: 441-444. PMID 10043808  1
1991 Hwa T, Kokufuta E, Tanaka T. Conformation of graphite oxide membranes in solution. Physical Review. A. 44: R2235-R2238. PMID 9906266 DOI: 10.1103/PhysRevA.44.R2235  1
1991 Hwa T, Frey E. Exact scaling function of interface growth dynamics. Physical Review. A. 44: R7873-R7876. PMID 9906018 DOI: 10.1103/PhysRevA.44.R7873  1
1991 Hwa T, Kardar M, Paczuski M. Growth-induced roughening of crystalline facets Physical Review Letters. 66: 441-444. DOI: 10.1103/PhysRevLett.66.441  1
1990 Duplantier B, Hwa T, Kardar M. Self-avoiding crumpled manifolds: Perturbative analysis and renormalizability. Physical Review Letters. 64: 2022-2025. PMID 10041557 DOI: 10.1103/PhysRevLett.64.2022  1
1990 Hwa T. Generalized ε expansion for self-avoiding tethered manifolds Physical Review A. 41: 1751-1756. DOI: 10.1103/PhysRevA.41.1751  1
1989 Hwa T, Kardar M. Dissipative transport in open systems: An investigation of self-organized criticality. Physical Review Letters. 62: 1813-1816. PMID 10039777 DOI: 10.1103/PhysRevLett.62.1813  1
1989 Medina E, Hwa T, Kardar M, Zhang YC. Burgers equation with correlated noise: Renormalization-group analysis and applications to directed polymers and interface growth. Physical Review. A. 39: 3053-3075. PMID 9901600 DOI: 10.1103/PhysRevA.39.3053  1
1989 Hwa T, Kardar M. Fractals and self-organized criticality in dissipative dynamics Physica D: Nonlinear Phenomena. 38: 198-202. DOI: 10.1016/0167-2789(89)90191-7  1
1988 Hwa T, Kardar M. Evolution of surface patterns on swelling gels. Physical Review Letters. 61: 106-109. PMID 10038705 DOI: 10.1103/PhysRevLett.61.106  1
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