| Year |
Citation |
Score |
| 2020 |
Damasceno JD, Marques CA, Beraldi D, Crouch K, Lapsley C, Obonaga R, Tosi LRO, McCulloch R. Genome duplication in relies on persistent subtelomeric DNA replication. Elife. 9. PMID 32897188 DOI: 10.7554/eLife.58030 |
0.315 |
|
| 2020 |
Damasceno JD, Reis-Cunha J, Crouch K, Beraldi D, Lapsley C, Tosi LRO, Bartholomeu D, McCulloch R. Conditional knockout of RAD51-related genes in Leishmania major reveals a critical role for homologous recombination during genome replication. Plos Genetics. 16: e1008828. PMID 32609721 DOI: 10.1371/journal.pgen.1008828 |
0.358 |
|
| 2018 |
Raiber EA, Portella G, Martínez Cuesta S, Hardisty R, Murat P, Li Z, Iurlaro M, Dean W, Spindel J, Beraldi D, Liu Z, Dawson MA, Reik W, Balasubramanian S. 5-Formylcytosine organizes nucleosomes and forms Schiff base interactions with histones in mouse embryonic stem cells. Nature Chemistry. PMID 30349137 DOI: 10.1038/S41557-018-0149-X |
0.485 |
|
| 2018 |
Mao SQ, Ghanbarian AT, Spiegel J, Martínez Cuesta S, Beraldi D, Di Antonio M, Marsico G, Hänsel-Hertsch R, Tannahill D, Balasubramanian S. DNA G-quadruplex structures mold the DNA methylome. Nature Structural & Molecular Biology. PMID 30275516 DOI: 10.1038/S41594-018-0131-8 |
0.502 |
|
| 2018 |
Kawasaki F, Martínez Cuesta S, Beraldi D, Mahtey A, Hardisty RE, Carrington M, Balasubramanian S. Sequencing 5-hydroxymethyluracil at single-base resolution. Angewandte Chemie (International Ed. in English). PMID 29882366 DOI: 10.1002/Anie.201804046 |
0.579 |
|
| 2017 |
Raiber EA, Beraldi D, Martínez Cuesta S, McInroy GR, Kingsbury Z, Becq J, James T, Lopes M, Allinson K, Field S, Humphray S, Santarius T, Watts C, Bentley D, Balasubramanian S. Base resolution maps reveal the importance of 5-hydroxymethylcytosine in a human glioblastoma. Npj Genomic Medicine. 2: 6. PMID 29263824 DOI: 10.1038/S41525-017-0007-6 |
0.556 |
|
| 2017 |
Kawasaki F, Beraldi D, Hardisty RE, McInroy GR, van Delft P, Balasubramanian S. Genome-wide mapping of 5-hydroxymethyluracil in the eukaryote parasite Leishmania. Genome Biology. 18: 23. PMID 28137275 DOI: 10.1186/S13059-017-1150-1 |
0.566 |
|
| 2017 |
Beraldi D. ASCIIGenome: A command line genome browser for console terminals. Bioinformatics (Oxford, England). PMID 28119307 DOI: 10.1093/Bioinformatics/Btx007 |
0.316 |
|
| 2017 |
Raiber E, Beraldi D, Cuesta SM, McInroy G, Kingsbury Z, Becq J, James T, Lopes M, Allinson K, Field S, Humphray S, Santarius T, Watts C, Bentley D, Balasubramanian S. GENE-46. COMPARISON OF MATCHED GLIOBLASTOMA TUMOR AND MARGIN SAMPLES USING SINGLE BASE RESOLUTION MAPS REVEALS ACQUIRED, EARLY EPIGENETIC CHANGES THAT PREDISPOSE TO MUTATIONS DURING TUMOURIGENESIS Neuro-Oncology. 19: vi102-vi102. DOI: 10.1093/Neuonc/Nox168.419 |
0.482 |
|
| 2016 |
Hänsel-Hertsch R, Beraldi D, Lensing SV, Marsico G, Zyner K, Parry A, Di Antonio M, Pike J, Kimura H, Narita M, Tannahill D, Balasubramanian S. G-quadruplex structures mark human regulatory chromatin. Nature Genetics. PMID 27618450 DOI: 10.1038/Ng.3662 |
0.5 |
|
| 2016 |
Iurlaro M, McInroy GR, Burgess HE, Dean W, Raiber EA, Bachman M, Beraldi D, Balasubramanian S, Reik W. In vivo genome-wide profiling reveals a tissue-specific role for 5-formylcytosine. Genome Biology. 17: 141. PMID 27356509 DOI: 10.1186/S13059-016-1001-5 |
0.576 |
|
| 2016 |
McInroy GR, Beraldi D, Raiber EA, Modrzynska K, van Delft P, Billker O, Balasubramanian S. Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments. Plos One. 11: e0152322. PMID 27031619 DOI: 10.1371/Journal.Pone.0152322 |
0.597 |
|
| 2015 |
Robert C, Kapetanovic R, Beraldi D, Watson M, Archibald AL, Hume DA. Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome. Bmc Genomics. 16: 970. PMID 26582032 DOI: 10.1186/S12864-015-2111-2 |
0.438 |
|
| 2015 |
Sanders DA, Gormally MV, Marsico G, Beraldi D, Tannahill D, Balasubramanian S. FOXM1 binds directly to non-consensus sequences in the human genome. Genome Biology. 16: 130. PMID 26100407 DOI: 10.1186/S13059-015-0696-Z |
0.531 |
|
| 2015 |
Field SF, Beraldi D, Bachman M, Stewart SK, Beck S, Balasubramanian S. Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array). Plos One. 10: e0118202. PMID 25706862 DOI: 10.1371/Journal.Pone.0118202 |
0.494 |
|
| 2015 |
Raiber EA, Murat P, Chirgadze DY, Beraldi D, Luisi BF, Balasubramanian S. 5-Formylcytosine alters the structure of the DNA double helix. Nature Structural & Molecular Biology. 22: 44-9. PMID 25504322 DOI: 10.1038/Nsmb.2936 |
0.553 |
|
| 2014 |
Booth MJ, Marsico G, Bachman M, Beraldi D, Balasubramanian S. Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution. Nature Chemistry. 6: 435-40. PMID 24755596 DOI: 10.1038/Nchem.1893 |
0.622 |
|
| 2014 |
Booth MJ, Marsico G, Bachman M, Beraldi D, Balasubramanian S. Addendum: Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution Nature Chemistry. 6: 553-553. DOI: 10.1038/Nchem.1959 |
0.537 |
|
| 2013 |
Booth MJ, Ost TW, Beraldi D, Bell NM, Branco MR, Reik W, Balasubramanian S. Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine. Nature Protocols. 8: 1841-51. PMID 24008380 DOI: 10.1038/Nprot.2013.115 |
0.545 |
|
| 2013 |
Kapetanovic R, Fairbairn L, Downing A, Beraldi D, Sester DP, Freeman TC, Tuggle CK, Archibald AL, Hume DA. The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide. Bmc Genomics. 14: 581. PMID 23984833 DOI: 10.1186/1471-2164-14-581 |
0.308 |
|
| 2013 |
Dawson HD, Loveland JE, Pascal G, Gilbert JG, Uenishi H, Mann KM, Sang Y, Zhang J, Carvalho-Silva D, Hunt T, Hardy M, Hu Z, Zhao SH, Anselmo A, Shinkai H, ... ... Beraldi D, et al. Structural and functional annotation of the porcine immunome. Bmc Genomics. 14: 332. PMID 23676093 DOI: 10.1186/1471-2164-14-332 |
0.344 |
|
| 2013 |
Lam EY, Beraldi D, Tannahill D, Balasubramanian S. G-quadruplex structures are stable and detectable in human genomic DNA. Nature Communications. 4: 1796. PMID 23653208 DOI: 10.1038/Ncomms2792 |
0.573 |
|
| 2013 |
Sanders DA, Ross-Innes CS, Beraldi D, Carroll JS, Balasubramanian S. Genome-wide mapping of FOXM1 binding reveals co-binding with estrogen receptor alpha in breast cancer cells. Genome Biology. 14: R6. PMID 23347430 DOI: 10.1186/Gb-2013-14-1-R6 |
0.47 |
|
| 2013 |
Brown EA, Pilkington JG, Nussey DH, Watt KA, Hayward AD, Tucker R, Graham AL, Paterson S, Beraldi D, Pemberton JM, Slate J. Detecting genes for variation in parasite burden and immunological traits in a wild population: testing the candidate gene approach. Molecular Ecology. 22: 757-73. PMID 22998224 DOI: 10.1111/J.1365-294X.2012.05757.X |
0.383 |
|
| 2012 |
Freeman TC, Ivens A, Baillie JK, Beraldi D, Barnett MW, Dorward D, Downing A, Fairbairn L, Kapetanovic R, Raza S, Tomoiu A, Alberio R, Wu C, Su AI, Summers KM, et al. A gene expression atlas of the domestic pig. Bmc Biology. 10: 90. PMID 23153189 DOI: 10.1186/1741-7007-10-90 |
0.355 |
|
| 2012 |
Raiber EA, Beraldi D, Ficz G, Burgess HE, Branco MR, Murat P, Oxley D, Booth MJ, Reik W, Balasubramanian S. Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase. Genome Biology. 13: R69. PMID 22902005 DOI: 10.1186/Gb-2012-13-8-R69 |
0.598 |
|
| 2011 |
Johnston SE, McEwan JC, Pickering NK, Kijas JW, Beraldi D, Pilkington JG, Pemberton JM, Slate J. Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population. Molecular Ecology. 20: 2555-66. PMID 21651634 DOI: 10.1111/J.1365-294X.2011.05076.X |
0.391 |
|
| 2010 |
Hernández-Sánchez J, Chatzipli A, Beraldi D, Gratten J, Pilkington JG, Pemberton JM. Mapping quantitative trait loci in a wild population using linkage and linkage disequilibrium analyses. Genetics Research. 92: 273-81. PMID 20943008 DOI: 10.1017/S0016672310000340 |
0.344 |
|
| 2010 |
Hunt P, Martinelli A, Modrzynska K, Borges S, Creasey A, Rodrigues L, Beraldi D, Loewe L, Fawcett R, Kumar S, Thomson M, Trivedi U, Otto TD, Pain A, Blaxter M, et al. Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogenic lineage of malaria parasites. Bmc Genomics. 11: 499. PMID 20846421 DOI: 10.1186/1471-2164-11-499 |
0.4 |
|
| 2010 |
Tarka M, Akesson M, Beraldi D, Hernández-Sánchez J, Hasselquist D, Bensch S, Hansson B. A strong quantitative trait locus for wing length on chromosome 2 in a wild population of great reed warblers. Proceedings. Biological Sciences / the Royal Society. 277: 2361-9. PMID 20335216 DOI: 10.1098/Rspb.2010.0033 |
0.384 |
|
| 2010 |
Johnston SE, Beraldi D, McRae AF, Pemberton JM, Slate J. Horn type and horn length genes map to the same chromosomal region in Soay sheep. Heredity. 104: 196-205. PMID 19690581 DOI: 10.1038/Hdy.2009.109 |
0.348 |
|
| 2010 |
Gratten J, Pilkington JG, Brown EA, Beraldi D, Pemberton JM, Slate J. The genetic basis of recessive self-colour pattern in a wild sheep population. Heredity. 104: 206-14. PMID 19672282 DOI: 10.1038/Hdy.2009.105 |
0.322 |
|
| 2010 |
Slate J, Gratten J, Beraldi D, Stapley J, Hale M, Pemberton JM. Erratum to: Gene mapping in the wild with SNPs: guidelines and future directions Genetica. 138: 467-467. DOI: 10.1007/S10709-010-9445-0 |
0.335 |
|
| 2009 |
Chessa B, Pereira F, Arnaud F, Amorim A, Goyache F, Mainland I, Kao RR, Pemberton JM, Beraldi D, Stear MJ, Alberti A, Pittau M, Iannuzzi L, Banabazi MH, Kazwala RR, et al. Revealing the history of sheep domestication using retrovirus integrations. Science (New York, N.Y.). 324: 532-6. PMID 19390051 DOI: 10.1126/Science.1170587 |
0.31 |
|
| 2009 |
Slate J, Gratten J, Beraldi D, Stapley J, Hale M, Pemberton JM. Gene mapping in the wild with SNPs: guidelines and future directions. Genetica. 136: 97-107. PMID 18780148 DOI: 10.1007/S10709-008-9317-Z |
0.39 |
|
| 2008 |
Gratten J, Wilson AJ, McRae AF, Beraldi D, Visscher PM, Pemberton JM, Slate J. A localized negative genetic correlation constrains microevolution of coat color in wild sheep. Science (New York, N.Y.). 319: 318-20. PMID 18202287 DOI: 10.1126/Science.1151182 |
0.303 |
|
| 2007 |
Beraldi D, McRae AF, Gratten J, Slate J, Visscher PM, Pemberton JM. Mapping quantitative trait Loci underlying fitness-related traits in a free-living sheep population. Evolution; International Journal of Organic Evolution. 61: 1403-16. PMID 17542849 DOI: 10.1111/J.1558-5646.2007.00106.X |
0.347 |
|
| 2007 |
Gratten J, Beraldi D, Lowder BV, McRae AF, Visscher PM, Pemberton JM, Slate J. Compelling evidence that a single nucleotide substitution in TYRP1 is responsible for coat-colour polymorphism in a free-living population of Soay sheep. Proceedings. Biological Sciences / the Royal Society. 274: 619-26. PMID 17254985 DOI: 10.1098/Rspb.2006.3762 |
0.322 |
|
| 2007 |
Beraldi D, McRae AF, Gratten J, Pilkington JG, Slate J, Visscher PM, Pemberton JM. Quantitative trait loci (QTL) mapping of resistance to strongyles and coccidia in the free-living Soay sheep (Ovis aries). International Journal For Parasitology. 37: 121-9. PMID 17067607 DOI: 10.1016/J.Ijpara.2006.09.007 |
0.41 |
|
| 2006 |
Beraldi D, McRae AF, Gratten J, Slate J, Visscher PM, Pemberton JM. Development of a linkage map and mapping of phenotypic polymorphisms in a free-living population of Soay sheep (Ovis aries). Genetics. 173: 1521-37. PMID 16868121 DOI: 10.1534/Genetics.106.057141 |
0.385 |
|
| 2006 |
McRae AF, Beraldi D. Examination of a region showing linkage map discrepancies across sheep breeds. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 17: 346-53. PMID 16596456 DOI: 10.1007/S00335-005-0087-Y |
0.353 |
|
| 2004 |
Beraldi D, Picarella ME, Soressi GP, Mazzucato A. Fine mapping of the parthenocarpic fruit ( pat) mutation in tomato. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 108: 209-16. PMID 14564391 DOI: 10.1007/S00122-003-1442-6 |
0.363 |
|
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