| Year |
Citation |
Score |
| 2022 |
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Miller W, et al. Author Correction: Comparative and demographic analysis of orang-utan genomes. Nature. PMID 35962045 DOI: 10.1038/s41586-022-04799-7 |
0.71 |
|
| 2020 |
Kitchen SA, Von Kuster G, Kuntz KLV, Reich HG, Miller W, Griffin S, Fogarty ND, Baums IB. STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts. Scientific Reports. 10: 12488. PMID 32719467 DOI: 10.1038/S41598-020-69101-Z |
0.357 |
|
| 2020 |
Fry E, Kim SK, Chigurapti S, Mika KM, Ratan A, Dammermann A, Mitchell BJ, Miller W, Lynch VJ. Functional architecture of deleterious genetic variants in the genome of a Wrangel Island mammoth. Genome Biology and Evolution. PMID 32031213 DOI: 10.1093/Gbe/Evz279 |
0.667 |
|
| 2019 |
Kitchen SA, Ratan A, Bedoya-Reina OC, Burhans R, Fogarty ND, Miller W, Baums IB. Genomic Variants Among Threatened Corals. G3 (Bethesda, Md.). PMID 30914426 DOI: 10.1534/G3.119.400125 |
0.733 |
|
| 2016 |
Agaba M, Ishengoma E, Miller WC, McGrath BC, Hudson CN, Bedoya Reina OC, Ratan A, Burhans R, Chikhi R, Medvedev P, Praul CA, Wu-Cavener L, Wood B, Robertson H, Penfold L, et al. Giraffe genome sequence reveals clues to its unique morphology and physiology. Nature Communications. 7: 11519. PMID 27187213 DOI: 10.1038/Ncomms11519 |
0.676 |
|
| 2016 |
Cui X, Wang Y, Hua B, Miller W, Zhao Y, Cui H, Kong X. Sex determination by SRY PCR and sequencing of Tasmanian devil facial tumour cell lines reveals non-allograft transmission. Biochemical and Biophysical Research Communications. PMID 27084454 DOI: 10.1016/J.Bbrc.2016.04.052 |
0.36 |
|
| 2015 |
Parker CT, Huynh S, Gorski L, Cooper KK, Miller WG. Complete Genome Sequences of Two Outbreak Strains of Salmonella enterica subsp. enterica Serovar Thompson Associated with Cilantro. Genome Announcements. 3. PMID 26586897 DOI: 10.1128/Genomea.01365-15 |
0.318 |
|
| 2015 |
Miller WG, Yee E, On SL, Andersen LP, Bono JL. Complete Genome Sequence of the Campylobacter ureolyticus Clinical Isolate RIGS 9880. Genome Announcements. 3. PMID 26543122 DOI: 10.1128/genomeA.01291-15 |
0.337 |
|
| 2015 |
Miller WG, Yee E. Complete Genome Sequence of Campylobacter gracilis ATCC 33236T. Genome Announcements. 3. PMID 26383656 DOI: 10.1128/genomeA.01087-15 |
0.345 |
|
| 2015 |
Fuller ZL, Niño EL, Patch HM, Bedoya-Reina OC, Baumgarten T, Muli E, Mumoki F, Ratan A, McGraw J, Frazier M, Masiga D, Schuster S, Grozinger CM, Miller W. Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools. Bmc Genomics. 16: 518. PMID 26159619 DOI: 10.1186/S12864-015-1712-0 |
0.711 |
|
| 2015 |
Lynch VJ, Bedoya-Reina OC, Ratan A, Sulak M, Drautz-Moses DI, Perry GH, Miller W, Schuster SC. Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic. Cell Reports. 12: 217-28. PMID 26146078 DOI: 10.1016/J.Celrep.2015.06.027 |
0.671 |
|
| 2015 |
Ratan A, Olson TL, Loughran TP, Miller W. Identification of indels in next-generation sequencing data. Bmc Bioinformatics. 16: 42. PMID 25879703 DOI: 10.1186/S12859-015-0483-6 |
0.719 |
|
| 2015 |
Kistler L, Ratan A, Godfrey LR, Crowley BE, Hughes CE, Lei R, Cui Y, Wood ML, Muldoon KM, Andriamialison H, McGraw JJ, Tomsho LP, Schuster SC, Miller W, Louis EE, et al. Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs. Journal of Human Evolution. 79: 45-54. PMID 25523037 DOI: 10.1016/J.Jhevol.2014.06.016 |
0.658 |
|
| 2015 |
Fuller ZL, Niño EL, Patch HM, Bedoya-Reina OC, Baumgarten T, Muli E, Mumoki F, Ratan A, McGraw J, Frazier M, Masiga D, Schuster S, Grozinger CM, Miller W. Genome-wide analysis of signatures of selection in populations of African honey bees (Apis mellifera) using new web-based tools Bmc Genomics. DOI: 10.1186/s12864-015-1712-0 |
0.659 |
|
| 2015 |
Lynch VJ, Bedoya-Reina OC, Ratan A, Sulak M, Drautz-Moses DI, Perry GH, Miller W, Schuster SC. Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic Cell Reports. DOI: 10.1016/j.celrep.2015.06.027 |
0.674 |
|
| 2014 |
Kim HL, Ratan A, Perry GH, Montenegro A, Miller W, Schuster SC. Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history. Nature Communications. 5: 5692. PMID 25471224 DOI: 10.1038/Ncomms6692 |
0.672 |
|
| 2014 |
van der Graaf-van Bloois L, Miller WG, Yee E, Rijnsburger M, Wagenaar JA, Duim B. Inconsistency of phenotypic and genomic characteristics of Campylobacter fetus subspecies requires reevaluation of current diagnostics. Journal of Clinical Microbiology. 52: 4183-8. PMID 25232170 DOI: 10.1128/JCM.01837-14 |
0.319 |
|
| 2014 |
Welch AJ, Bedoya-Reina OC, Carretero-Paulet L, Miller W, Rode KD, Lindqvist C. Polar bears exhibit genome-wide signatures of bioenergetic adaptation to life in the arctic environment Genome Biology and Evolution. 6: 433-450. PMID 24504087 DOI: 10.1093/Gbe/Evu025 |
0.385 |
|
| 2014 |
Giardine B, Borg J, Viennas E, Pavlidis C, Moradkhani K, Joly P, Bartsakoulia M, Riemer C, Miller W, Tzimas G, Wajcman H, Hardison RC, Patrinos GP. Updates of the HbVar database of human hemoglobin variants and thalassemia mutations Nucleic Acids Research. 42: D1063-D1069. PMID 24137000 DOI: 10.1093/Nar/Gkt911 |
0.402 |
|
| 2013 |
Bedoya-Reina OC, Ratan A, Burhans R, Kim HL, Giardine B, Riemer C, Li Q, Olson TL, Loughran TP, Vonholdt BM, Perry GH, Schuster SC, Miller W. Galaxy tools to study genome diversity. Gigascience. 2: 17. PMID 24377391 DOI: 10.1186/2047-217X-2-17 |
0.744 |
|
| 2013 |
Perry GH, Louis EE, Ratan A, Bedoya-Reina OC, Burhans RC, Lei R, Johnson SE, Schuster SC, Miller W. Aye-aye population genomic analyses highlight an important center of endemism in northern Madagascar. Proceedings of the National Academy of Sciences of the United States of America. 110: 5823-8. PMID 23530231 DOI: 10.1073/Pnas.1211990110 |
0.7 |
|
| 2013 |
Ratan A, Miller W, Guillory J, Stinson J, Seshagiri S, Schuster SC. Comparison of sequencing platforms for single nucleotide variant calls in a human sample. Plos One. 8: e55089. PMID 23405114 DOI: 10.1371/Journal.Pone.0055089 |
0.735 |
|
| 2013 |
Ratan A, Miller W, Guillory J, Stinson J, Seshagiri S, Schuster SC. Venn diagram showing the overlap in the SNP calls made using data from the three sequencing technologies. Plos One. DOI: 10.1371/Journal.Pone.0055089.G003 |
0.655 |
|
| 2012 |
Giardine BM, Riemer C, Burhans R, Ratan A, Miller W. Some phenotype association tools in Galaxy: looking for disease SNPs in a full genome. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit15.2. PMID 22948727 DOI: 10.1002/0471250953.Bi1502S39 |
0.693 |
|
| 2012 |
Gupta R, Ratan A, Rajesh C, Chen R, Kim HL, Burhans R, Miller W, Santhosh S, Davuluri RV, Butte AJ, Schuster SC, Seshagiri S, Thomas G. Sequencing and analysis of a South Asian-Indian personal genome. Bmc Genomics. 13: 440. PMID 22938532 DOI: 10.1186/1471-2164-13-440 |
0.74 |
|
| 2012 |
Miller W, Schuster SC, Welch AJ, Ratan A, Bedoya-Reina OC, Zhao F, Kim HL, Burhans RC, Drautz DI, Wittekindt NE, Tomsho LP, Ibarra-Laclette E, Herrera-Estrella L, Peacock E, Farley S, et al. Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change. Proceedings of the National Academy of Sciences of the United States of America. 109: E2382-90. PMID 22826254 DOI: 10.1073/Pnas.1210506109 |
0.707 |
|
| 2012 |
Song G, Riemer C, Dickins B, Kim HL, Zhang L, Zhang Y, Hsu CH, Hardison RC, Nisc Comparative Sequencing Program, Green ED, Miller W. Revealing mammalian evolutionary relationships by comparative analysis of gene clusters. Genome Biology and Evolution. 4: 586-601. PMID 22454131 DOI: 10.1093/Gbe/Evs032 |
0.718 |
|
| 2012 |
Perry GH, Reeves D, Melsted P, Ratan A, Miller W, Michelini K, Louis EE, Pritchard JK, Mason CE, Gilad Y. A genome sequence resource for the aye-aye (Daubentonia madagascariensis), a nocturnal lemur from Madagascar. Genome Biology and Evolution. 4: 126-35. PMID 22155688 DOI: 10.1093/Gbe/Evr132 |
0.758 |
|
| 2012 |
Miller W, Hayes VM, Ratan A, Petersen DC, Wittekindt NE, Miller J, Walenz B, Knight J, Qi J, Zhao F, Wang Q, Bedoya-Reina OC, Katiyar N, Tomsho LP, Kasson LM, et al. Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) (Proceedings of the National Academy of Sciences of the United States of America (2011) 108, 30 (12348-12353) DOI: 10.1073/pnas.1102838108) Proceedings of the National Academy of Sciences of the United States of America. 109: 18625. DOI: 10.1073/Pnas.1217345109 |
0.59 |
|
| 2011 |
Song G, Hsu CH, Riemer C, Zhang Y, Kim HL, Hoffmann F, Zhang L, Hardison RC, Green ED, Miller W. Conversion events in gene clusters. Bmc Evolutionary Biology. 11: 226. PMID 21798034 DOI: 10.1186/1471-2148-11-226 |
0.676 |
|
| 2011 |
Wu W, Cheng Y, Keller CA, Ernst J, Kumar SA, Mishra T, Morrissey C, Dorman CM, Chen KB, Drautz D, Giardine B, Shibata Y, Song L, Pimkin M, Crawford GE, ... ... Miller W, et al. Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration. Genome Research. 21: 1659-71. PMID 21795386 DOI: 10.1101/Gr.125088.111 |
0.736 |
|
| 2011 |
Miller W, Hayes VM, Ratan A, Petersen DC, Wittekindt NE, Miller J, Walenz B, Knight J, Qi J, Zhao F, Wang Q, Bedoya-Reina OC, Katiyar N, Tomsho LP, Kasson LM, et al. Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil). Proceedings of the National Academy of Sciences of the United States of America. 108: 12348-53. PMID 21709235 DOI: 10.1073/Pnas.1102838108 |
0.714 |
|
| 2011 |
Taher L, McGaughey DM, Maragh S, Aneas I, Bessling SL, Miller W, Nobrega MA, McCallion AS, Ovcharenko I. Genome-wide identification of conserved regulatory function in diverged sequences. Genome Research. 21: 1139-49. PMID 21628450 DOI: 10.1101/Gr.119016.110 |
0.447 |
|
| 2011 |
Giardine B, Borg J, Higgs DR, Peterson KR, Philipsen S, Maglott D, Singleton BK, Anstee DJ, Basak AN, Clark B, Costa FC, Faustino P, Fedosyuk H, Felice AE, Francina A, ... ... Miller W, et al. Systematic documentation and analysis of human genetic variation in hemoglobinopathies using the microattribution approach. Nature Genetics. 43: 295-301. PMID 21423179 DOI: 10.1038/Ng.785 |
0.337 |
|
| 2011 |
Song G, Hsu CH, Riemer C, Miller W. Evaluation of methods for detecting conversion events in gene clusters. Bmc Bioinformatics. 12: S45. PMID 21342577 DOI: 10.1186/1471-2105-12-S1-S45 |
0.637 |
|
| 2011 |
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Miller W, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687 |
0.766 |
|
| 2010 |
Hsu CH, Zhang Y, Hardison RC, Green ED, Miller W. An effective method for detecting gene conversion events in whole genomes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1281-97. PMID 20874409 DOI: 10.1089/Cmb.2010.0103 |
0.657 |
|
| 2010 |
Song G, Zhang L, Vinar T, Miller W. CAGE: Combinatorial Analysis of Gene-cluster Evolution. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1227-42. PMID 20874406 DOI: 10.1089/Cmb.2010.0094 |
0.593 |
|
| 2010 |
Elnitski L, Burhans R, Riemer C, Hardison R, Miller W. MultiPipMaker: a comparative alignment server for multiple DNA sequences. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit10.4. PMID 20521245 DOI: 10.1002/0471250953.bi1004s30 |
0.406 |
|
| 2010 |
Ratan A, Zhang Y, Hayes VM, Schuster SC, Miller W. Calling SNPs without a reference sequence. Bmc Bioinformatics. 11: 130. PMID 20230626 DOI: 10.1186/1471-2105-11-130 |
0.749 |
|
| 2010 |
Lindqvist C, Schuster SC, Sun Y, Talbot SL, Qi J, Ratan A, Tomsho LP, Kasson L, Zeyl E, Aars J, Miller W, Ingólfsson O, Bachmann L, Wiig O. Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear. Proceedings of the National Academy of Sciences of the United States of America. 107: 5053-7. PMID 20194737 DOI: 10.1073/Pnas.0914266107 |
0.661 |
|
| 2010 |
Tindall EA, Petersen DC, Nikolaysen S, Miller W, Schuster SC, Hayes VM. Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation. Bmc Research Notes. 3: 39. PMID 20175893 DOI: 10.1186/1756-0500-3-39 |
0.366 |
|
| 2010 |
Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, et al. Complete Khoisan and Bantu genomes from southern Africa. Nature. 463: 943-7. PMID 20164927 DOI: 10.1038/Nature08795 |
0.749 |
|
| 2009 |
Cheng Y, Wu W, Kumar SA, Yu D, Deng W, Tripic T, King DC, Chen KB, Zhang Y, Drautz D, Giardine B, Schuster SC, Miller W, Chiaromonte F, Zhang Y, et al. Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression. Genome Research. 19: 2172-84. PMID 19887574 DOI: 10.1101/Gr.098921.109 |
0.387 |
|
| 2009 |
Zhang Y, Song G, Vinar T, Green ED, Siepel A, Miller W. Evolutionary history reconstruction for Mammalian complex gene clusters. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1051-70. PMID 19645598 DOI: 10.1089/Cmb.2009.0040 |
0.628 |
|
| 2009 |
Willerslev E, Gilbert MT, Binladen J, Ho SY, Campos PF, Ratan A, Tomsho LP, da Fonseca RR, Sher A, Kuznetsova TV, Nowak-Kemp M, Roth TL, Miller W, Schuster SC. Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution. Bmc Evolutionary Biology. 9: 95. PMID 19432984 DOI: 10.1186/1471-2148-9-95 |
0.719 |
|
| 2009 |
Zhang Y, Song G, Hsu CH, Miller W. Simultaneous history reconstruction for complex gene clusters in multiple species. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 162-73. PMID 19209701 |
0.695 |
|
| 2009 |
Miller W, Drautz DI, Janecka JE, Lesk AM, Ratan A, Tomsho LP, Packard M, Zhang Y, McClellan LR, Qi J, Zhao F, Gilbert MT, Dalén L, Arsuaga JL, Ericson PG, et al. The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). Genome Research. 19: 213-20. PMID 19139089 DOI: 10.1101/Gr.082628.108 |
0.733 |
|
| 2009 |
Addo-Quaye C, Miller W, Axtell MJ. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics (Oxford, England). 25: 130-1. PMID 19017659 DOI: 10.1093/Bioinformatics/Btn604 |
0.759 |
|
| 2009 |
Haussler D, O'Brien SJ, Ryder OA, Keith Barker F, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA, Miller W, Murphy RW, Murphy WJ, Sheldon FH, Sinervo B, et al. Genome 10K: A proposal to obtain whole-genome sequence for 10000 vertebrate species Journal of Heredity. 100: 659-674. DOI: 10.1093/Jhered/Esp086 |
0.473 |
|
| 2009 |
Hou M, Riemer C, Berman P, Hardison RC, Miller W. Aligning two genomic sequences that contain duplications Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5817: 98-110. DOI: 10.1007/978-3-642-04744-2_9 |
0.432 |
|
| 2009 |
Hsu CH, Zhang Y, Hardison R, Miller W. Whole-genome analysis of gene conversion events Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5817: 181-192. DOI: 10.1007/978-3-642-04744-2_15 |
0.579 |
|
| 2009 |
Song G, Zhang L, Vinař T, Miller W. Inferring the recent duplication history of a gene cluster Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5817: 111-125. DOI: 10.1007/978-3-642-04744-2_10 |
0.452 |
|
| 2008 |
Miller W, Drautz DI, Ratan A, Pusey B, Qi J, Lesk AM, Tomsho LP, Packard MD, Zhao F, Sher A, Tikhonov A, Raney B, Patterson N, Lindblad-Toh K, Lander ES, et al. Sequencing the nuclear genome of the extinct woolly mammoth. Nature. 456: 387-90. PMID 19020620 DOI: 10.1038/Nature07446 |
0.748 |
|
| 2008 |
Cheng Y, King DC, Dore LC, Zhang X, Zhou Y, Zhang Y, Dorman C, Abebe D, Kumar SA, Chiaromonte F, Miller W, Green RD, Weiss MJ, Hardison RC. Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. Genome Research. 18: 1896-905. PMID 18818370 DOI: 10.1101/Gr.083089.108 |
0.351 |
|
| 2008 |
Ma J, Ratan A, Raney BJ, Suh BB, Miller W, Haussler D. The infinite sites model of genome evolution. Proceedings of the National Academy of Sciences of the United States of America. 105: 14254-61. PMID 18787111 DOI: 10.1073/Pnas.0805217105 |
0.738 |
|
| 2008 |
Ma J, Ratan A, Raney BJ, Suh BB, Zhang L, Miller W, Haussler D. DUPCAR: reconstructing contiguous ancestral regions with duplications. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 1007-27. PMID 18774902 DOI: 10.1089/Cmb.2008.0069 |
0.73 |
|
| 2008 |
Blanchette M, Diallo AB, Green ED, Miller W, Haussler D. Computational reconstruction of ancestral DNA sequences. Methods in Molecular Biology (Clifton, N.J.). 422: 171-84. PMID 18629667 DOI: 10.1007/978-1-59745-581-7_11 |
0.494 |
|
| 2008 |
Rosenbloom K, Taylor J, Schaeffer S, Kent J, Haussler D, Miller W. Phylogenomic resources at the UCSC Genome Browser. Methods in Molecular Biology (Clifton, N.J.). 422: 133-44. PMID 18629665 DOI: 10.1007/978-1-59745-581-7_9 |
0.57 |
|
| 2008 |
Gilbert MT, Drautz DI, Lesk AM, Ho SY, Qi J, Ratan A, Hsu CH, Sher A, Dalén L, Götherström A, Tomsho LP, Rendulic S, Packard M, Campos PF, Kuznetsova TV, ... ... Miller W, et al. Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes. Proceedings of the National Academy of Sciences of the United States of America. 105: 8327-32. PMID 18541911 DOI: 10.1073/Pnas.0802315105 |
0.772 |
|
| 2008 |
Warren WC, Hillier LW, Marshall Graves JA, Birney E, Ponting CP, Grützner F, Belov K, Miller W, Clarke L, Chinwalla AT, Yang SP, Heger A, Locke DP, Miethke P, Waters PD, et al. Genome analysis of the platypus reveals unique signatures of evolution. Nature. 453: 175-83. PMID 18464734 DOI: 10.1038/Nature06936 |
0.506 |
|
| 2008 |
Tyekucheva S, Makova KD, Karro JE, Hardison RC, Miller W, Chiaromonte F. Human-macaque comparisons illuminate variation in neutral substitution rates. Genome Biology. 9: R76. PMID 18447906 DOI: 10.1186/Gb-2008-9-4-R76 |
0.332 |
|
| 2008 |
Buckley M, Walker A, Ho SY, Yang Y, Smith C, Ashton P, Oates JT, Cappellini E, Koon H, Penkman K, Elsworth B, Ashford D, Solazzo C, Andrews P, Strahler J, ... ... Miller W, et al. Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry". Science (New York, N.Y.). 319: 33; author reply 33. PMID 18174420 DOI: 10.1126/Science.1147046 |
0.328 |
|
| 2008 |
Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hinrichs AS, Hsu F, Kober KM, Miller W, Pedersen JS, Pohl A, Raney BJ, et al. The UCSC Genome Browser Database: 2008 update. Nucleic Acids Research. 36: D773-9. PMID 18086701 DOI: 10.1093/Nar/Gkm966 |
0.54 |
|
| 2008 |
Nguyen CT, Shen J, Hou M, Sheng L, Miller W, Zhang L. Approximating the Spanning Star Forest Problem and Its Application to Genomic Sequence Alignment Siam Journal On Computing. 38: 946-962. DOI: 10.1137/070682150 |
0.326 |
|
| 2008 |
Gilbert MTP, Miller W, Schuster SC. Response to Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts" Science. 322: 857b-857b. DOI: 10.1126/Science.1158565 |
0.442 |
|
| 2008 |
Zhang Y, Song G, Vinař T, Green ED, Siepel A, Miller W. Reconstructing the evolutionary history of complex human gene clusters Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 29-49. DOI: 10.1007/978-3-540-78839-3_4 |
0.459 |
|
| 2007 |
Karolchik D, Bejerano G, Hinrichs AS, Kuhn RM, Miller W, Rosenbloom KR, Zweig AS, Haussler D, Kent WJ. Comparative genomic analysis using the UCSC genome browser. Methods in Molecular Biology (Clifton, N.J.). 395: 17-34. PMID 17993665 DOI: 10.1007/978-1-59745-514-5_2 |
0.541 |
|
| 2007 |
Miller W, Rosenbloom K, Hardison RC, Hou M, Taylor J, Raney B, Burhans R, King DC, Baertsch R, Blankenberg D, Kosakovsky Pond SL, Nekrutenko A, Giardine B, Harris RS, Tyekucheva S, et al. 28-way vertebrate alignment and conservation track in the UCSC Genome Browser. Genome Research. 17: 1797-808. PMID 17984227 DOI: 10.1101/Gr.6761107 |
0.545 |
|
| 2007 |
Janecka JE, Miller W, Pringle TH, Wiens F, Zitzmann A, Helgen KM, Springer MS, Murphy WJ. Molecular and genomic data identify the closest living relative of primates. Science (New York, N.Y.). 318: 792-4. PMID 17975064 DOI: 10.1126/Science.1147555 |
0.524 |
|
| 2007 |
Gilbert MT, Tomsho LP, Rendulic S, Packard M, Drautz DI, Sher A, Tikhonov A, Dalén L, Kuznetsova T, Kosintsev P, Campos PF, Higham T, Collins MJ, Wilson AS, Shidlovskiy F, ... ... Miller W, et al. Whole-genome shotgun sequencing of mitochondria from ancient hair shafts. Science (New York, N.Y.). 317: 1927-30. PMID 17901335 DOI: 10.1126/Science.1146971 |
0.46 |
|
| 2007 |
Bird CP, Stranger BE, Liu M, Thomas DJ, Ingle CE, Beazley C, Miller W, Hurles ME, Dermitzakis ET. Fast-evolving noncoding sequences in the human genome. Genome Biology. 8: R118. PMID 17578567 DOI: 10.1186/Gb-2007-8-6-R118 |
0.532 |
|
| 2007 |
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Miller W, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874 |
0.516 |
|
| 2007 |
Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Research. 17: 960-4. PMID 17568012 DOI: 10.1101/Gr.5578007 |
0.472 |
|
| 2007 |
King DC, Taylor J, Zhang Y, Cheng Y, Lawson HA, Martin J, Chiaromonte F, Miller W, Hardison RC. Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data. Genome Research. 17: 775-86. PMID 17567996 DOI: 10.1101/Gr.5592107 |
0.528 |
|
| 2007 |
Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, ... ... Miller W, et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Research. 17: 760-74. PMID 17567995 DOI: 10.1101/Gr.6034307 |
0.532 |
|
| 2007 |
Han K, Konkel MK, Xing J, Wang H, Lee J, Meyer TJ, Huang CT, Sandifer E, Hebert K, Barnes EW, Hubley R, Miller W, Smit AF, Ullmer B, Batzer MA. Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science (New York, N.Y.). 316: 238-40. PMID 17431169 DOI: 10.1126/Science.1139462 |
0.483 |
|
| 2007 |
Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, ... ... Miller W, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247 |
0.829 |
|
| 2007 |
Giardine B, Riemer C, Hefferon T, Thomas D, Hsu F, Zielenski J, Sang Y, Elnitski L, Cutting G, Trumbower H, Kern A, Kuhn R, Patrinos GP, Hughes J, Higgs D, ... ... Miller W, et al. PhenCode: connecting ENCODE data with mutations and phenotype. Human Mutation. 28: 554-62. PMID 17326095 DOI: 10.1002/Humu.20484 |
0.481 |
|
| 2007 |
Murphy WJ, Pringle TH, Crider TA, Springer MS, Miller W. Using genomic data to unravel the root of the placental mammal phylogeny. Genome Research. 17: 413-21. PMID 17322288 DOI: 10.1101/Gr.5918807 |
0.57 |
|
| 2007 |
Giardine B, van Baal S, Kaimakis P, Riemer C, Miller W, Samara M, Kollia P, Anagnou NP, Chui DH, Wajcman H, Hardison RC, Patrinos GP. HbVar database of human hemoglobin variants and thalassemia mutations: 2007 update. Human Mutation. 28: 206. PMID 17221864 DOI: 10.1002/Humu.9479 |
0.404 |
|
| 2007 |
Gilbert MT, Binladen J, Miller W, Wiuf C, Willerslev E, Poinar H, Carlson JE, Leebens-Mack JH, Schuster SC. Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis. Nucleic Acids Research. 35: 1-10. PMID 16920744 DOI: 10.1093/Nar/Gkl483 |
0.35 |
|
| 2007 |
Hardison RC, King DC, Taylor J, Wang H, Zhang Y, Zhou Y, Cheng Y, Dorman C, Dore LC, Weiss MJ, Chiaromonte F, Miller W. Comparative genomics to find function in noncoding DNA Blood Cells, Molecules, and Diseases. 38: 144-145. DOI: 10.1016/J.Bcmd.2006.10.060 |
0.317 |
|
| 2007 |
Ma J, Ratan A, Zhang L, Miller W, Haussler D. A heuristic algorithm for reconstructing ancestral gene orders with duplications Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4751: 122-135. |
0.577 |
|
| 2006 |
Taylor J, Tyekucheva S, King DC, Hardison RC, Miller W, Chiaromonte F. ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements. Genome Research. 16: 1596-604. PMID 17053093 DOI: 10.1101/Gr.4537706 |
0.424 |
|
| 2006 |
Wang H, Zhang Y, Cheng Y, Zhou Y, King DC, Taylor J, Chiaromonte F, Kasturi J, Petrykowska H, Gibb B, Dorman C, Miller W, Dore LC, Welch J, Weiss MJ, et al. Experimental validation of predicted mammalian erythroid cis-regulatory modules. Genome Research. 16: 1480-92. PMID 17038566 DOI: 10.1101/Gr.5353806 |
0.412 |
|
| 2006 |
Ma J, Zhang L, Suh BB, Raney BJ, Burhans RC, Kent WJ, Blanchette M, Haussler D, Miller W. Reconstructing contiguous regions of an ancestral genome. Genome Research. 16: 1557-65. PMID 16983148 DOI: 10.1101/Gr.5383506 |
0.557 |
|
| 2006 |
Pedersen JS, Bejerano G, Siepel A, Rosenbloom K, Lindblad-Toh K, Lander ES, Kent J, Miller W, Haussler D. Identification and classification of conserved RNA secondary structures in the human genome. Plos Computational Biology. 2: e33. PMID 16628248 DOI: 10.1371/Journal.Pcbi.0020033 |
0.381 |
|
| 2006 |
Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B, Tikhonov A, Huson DH, Tomsho LP, Auch A, Rampp M, Miller W, Schuster SC. Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science (New York, N.Y.). 311: 392-4. PMID 16368896 DOI: 10.1126/Science.1123360 |
0.413 |
|
| 2005 |
Elnitski L, Riemer C, Burhans R, Hardison R, Miller W. MultiPipMaker: comparative alignment server for multiple DNA sequences. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit10.4. PMID 18428743 DOI: 10.1002/0471250953.Bi1004S9 |
0.507 |
|
| 2005 |
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A. Galaxy: a platform for interactive large-scale genome analysis. Genome Research. 15: 1451-5. PMID 16169926 DOI: 10.1101/Gr.4086505 |
0.408 |
|
| 2005 |
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Research. 15: 1034-50. PMID 16024819 DOI: 10.1101/Gr.3715005 |
0.497 |
|
| 2005 |
King DC, Taylor J, Elnitski L, Chiaromonte F, Miller W, Hardison RC. Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences. Genome Research. 15: 1051-60. PMID 16024817 DOI: 10.1101/Gr.3642605 |
0.533 |
|
| 2005 |
Hillier LW, Graves TA, Fulton RS, Fulton LA, Pepin KH, Minx P, Wagner-McPherson C, Layman D, Wylie K, Sekhon M, Becker MC, Fewell GA, Delehaunty KD, Miner TL, Nash WE, ... ... Miller W, et al. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. Nature. 434: 724-31. PMID 15815621 DOI: 10.1038/Nature03466 |
0.388 |
|
| 2005 |
Margulies EH, Vinson JP, Miller W, Jaffe DB, Lindblad-Toh K, Chang JL, Green ED, Lander ES, Mullikin JC, Clamp M. An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing. Proceedings of the National Academy of Sciences of the United States of America. 102: 4795-800. PMID 15778292 DOI: 10.1073/Pnas.0409882102 |
0.562 |
|
| 2005 |
Elnitski L, Giardine B, Shah P, Zhang Y, Riemer C, Weirauch M, Burhans R, Miller W, Hardison RC. Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. Nucleic Acids Research. 33: D466-70. PMID 15608239 DOI: 10.1093/Nar/Gki045 |
0.495 |
|
| 2005 |
Ovcharenko I, Loots GG, Nobrega MA, Hardison RC, Miller W, Stubbs L. Evolution and functional classification of vertebrate gene deserts. Genome Research. 15: 137-45. PMID 15590943 DOI: 10.1101/Gr.3015505 |
0.403 |
|
| 2005 |
Ovcharenko I, Loots GG, Giardine BM, Hou M, Ma J, Hardison RC, Stubbs L, Miller W. Mulan: multiple-sequence local alignment and visualization for studying function and evolution. Genome Research. 15: 184-94. PMID 15590941 DOI: 10.1101/Gr.3007205 |
0.618 |
|
| 2004 |
Blanchette M, Green ED, Miller W, Haussler D. Reconstructing large regions of an ancestral mammalian genome in silico. Genome Research. 14: 2412-23. PMID 15574820 DOI: 10.1101/Gr.2800104 |
0.538 |
|
| 2004 |
Miller W, Makova KD, Nekrutenko A, Hardison RC. Comparative genomics. Annual Review of Genomics and Human Genetics. 5: 15-56. PMID 15485342 DOI: 10.1146/annurev.genom.5.061903.180057 |
0.468 |
|
| 2004 |
She X, Horvath JE, Jiang Z, Liu G, Furey TS, Christ L, Clark R, Graves T, Gulden CL, Alkan C, Bailey JA, Sahinalp C, Rocchi M, Haussler D, Wilson RK, ... Miller W, et al. The structure and evolution of centromeric transition regions within the human genome. Nature. 430: 857-64. PMID 15318213 DOI: 10.1038/Nature02806 |
0.438 |
|
| 2004 |
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Research. 14: 708-15. PMID 15060014 DOI: 10.1101/Gr.1933104 |
0.53 |
|
| 2004 |
Kolbe D, Taylor J, Elnitski L, Eswara P, Li J, Miller W, Hardison R, Chiaromonte F. Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat. Genome Research. 14: 700-7. PMID 15060013 DOI: 10.1101/Gr.1976004 |
0.415 |
|
| 2004 |
Tufarelli C, Hardison R, Miller W, Hughes J, Clark K, Ventress N, Frischauf AM, Higgs DR. Comparative analysis of the alpha-like globin clusters in mouse, rat, and human chromosomes indicates a mechanism underlying breaks in conserved synteny. Genome Research. 14: 623-30. PMID 15060003 DOI: 10.1101/Gr.2143604 |
0.327 |
|
| 2004 |
Yang S, Smit AF, Schwartz S, Chiaromonte F, Roskin KM, Haussler D, Miller W, Hardison RC. Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes. Genome Research. 14: 517-27. PMID 15059992 DOI: 10.1101/Gr.1984404 |
0.436 |
|
| 2004 |
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, ... ... Miller W, et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521. PMID 15057822 DOI: 10.1038/Nature02426 |
0.551 |
|
| 2004 |
Ovcharenko I, Loots GG, Hardison RC, Miller W, Stubbs L. zPicture: dynamic alignment and visualization tool for analyzing conservation profiles. Genome Research. 14: 472-7. PMID 14993211 DOI: 10.1101/Gr.2129504 |
0.5 |
|
| 2004 |
Patrinos GP, Giardine B, Riemer C, Miller W, Chui DH, Anagnou NP, Wajcman H, Hardison RC. Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies. Nucleic Acids Research. 32: D537-41. PMID 14681476 DOI: 10.1093/Nar/Gkh006 |
0.479 |
|
| 2003 |
Elnitski L, Riemer C, Schwartz S, Hardison R, Miller W. PipMaker: a World Wide Web server for genomic sequence alignments. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 10.2. PMID 18428692 DOI: 10.1002/0471250953.Bi1002S00 |
0.536 |
|
| 2003 |
Farhadi HF, Lepage P, Forghani R, Friedman HC, Orfali W, Jasmin L, Miller W, Hudson TJ, Peterson AC. A combinatorial network of evolutionarily conserved myelin basic protein regulatory sequences confers distinct glial-specific phenotypes. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 10214-23. PMID 14614079 DOI: 10.1523/Jneurosci.23-32-10214.2003 |
0.343 |
|
| 2003 |
Chiaromonte F, Miller W, Bouhassira EE. Gene length and proximity to neighbors affect genome-wide expression levels. Genome Research. 13: 2602-8. PMID 14613975 DOI: 10.1101/Gr.1169203 |
0.369 |
|
| 2003 |
Yu CY, Chung EK, Yang Y, Blanchong CA, Jacobsen N, Saxena K, Yang Z, Miller W, Varga L, Fust G. Dancing with complement C4 and the RP-C4-CYP21-TNX (RCCX) modules of the major histocompatibility complex. Progress in Nucleic Acid Research and Molecular Biology. 75: 217-92. PMID 14604014 DOI: 10.1016/S0079-6603(03)75007-7 |
0.313 |
|
| 2003 |
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D. Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proceedings of the National Academy of Sciences of the United States of America. 100: 11484-9. PMID 14500911 DOI: 10.1073/Pnas.1932072100 |
0.539 |
|
| 2003 |
Rijnkels M, Elnitski L, Miller W, Rosen JM. Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins. Genomics. 82: 417-32. PMID 13679022 DOI: 10.1016/S0888-7543(03)00114-9 |
0.47 |
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| 2003 |
Li J, Miller W. Significance of interspecies matches when evolutionary rate varies. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 537-54. PMID 12935343 DOI: 10.1089/10665270360688174 |
0.523 |
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| 2003 |
Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, ... ... Miller W, et al. Comparative analyses of multi-species sequences from targeted genomic regions. Nature. 424: 788-93. PMID 12917688 DOI: 10.1038/Nature01858 |
0.572 |
|
| 2003 |
Florea L, McClelland M, Riemer C, Schwartz S, Miller W. EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae. Nucleic Acids Research. 31: 3527-32. PMID 12824359 DOI: 10.1093/Nar/Gkg551 |
0.746 |
|
| 2003 |
Schwartz S, Elnitski L, Li M, Weirauch M, Riemer C, Smit A, Green ED, Hardison RC, Miller W. MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences. Nucleic Acids Research. 31: 3518-24. PMID 12824357 DOI: 10.1093/Nar/Gkg579 |
0.536 |
|
| 2003 |
Giardine B, Elnitski L, Riemer C, Makalowska I, Schwartz S, Miller W, Hardison RC. GALA, a database for genomic sequence alignments and annotations. Genome Research. 13: 732-41. PMID 12671007 DOI: 10.1101/Gr.603103 |
0.557 |
|
| 2003 |
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. Human-mouse alignments with BLASTZ. Genome Research. 13: 103-7. PMID 12529312 DOI: 10.1101/Gr.809403 |
0.545 |
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| 2003 |
Elnitski L, Hardison RC, Li J, Yang S, Kolbe D, Eswara P, O'Connor MJ, Schwartz S, Miller W, Chiaromonte F. Distinguishing regulatory DNA from neutral sites. Genome Research. 13: 64-72. PMID 12529307 DOI: 10.1101/Gr.817703 |
0.526 |
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| 2003 |
Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D, Schwartz S, Furey TS, Whelan S, Goldman N, Smit A, ... Miller W, et al. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Research. 13: 13-26. PMID 12529302 DOI: 10.1101/Gr.844103 |
0.484 |
|
| 2003 |
Veeramachaneni V, Berman P, Miller W. Aligning two fragmented sequences Discrete Applied Mathematics. 127: 119-143. DOI: 10.1016/S0166-218X(02)00289-5 |
0.521 |
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| 2002 |
Elnitski L, Riemer C, Petrykowska H, Florea L, Schwartz S, Miller W, Hardison R. PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences. Genomics. 80: 681-90. PMID 12504859 DOI: 10.1006/Geno.2002.7018 |
0.736 |
|
| 2002 |
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, ... ... Miller W, et al. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-62. PMID 12466850 DOI: 10.1038/Nature01262 |
0.577 |
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| 2002 |
Maul JE, Lilly JW, Cui L, dePamphilis CW, Miller W, Harris EH, Stern DB. The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. The Plant Cell. 14: 2659-79. PMID 12417694 DOI: 10.1105/Tpc.006155 |
0.57 |
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| 2002 |
Agron PG, Macht M, Radnedge L, Skowronski EW, Miller W, Andersen GL. Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences. Fems Microbiology Letters. 211: 175-82. PMID 12076809 DOI: 10.1111/J.1574-6968.2002.Tb11221.X |
0.492 |
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| 2002 |
Molete JM, Petrykowska H, Sigg M, Miller W, Hardison R. Functional and binding studies of HS3.2 of the beta-globin locus control region. Gene. 283: 185-97. PMID 11867225 DOI: 10.1016/S0378-1119(01)00858-7 |
0.4 |
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| 2002 |
Hardison RC, Chui DH, Giardine B, Riemer C, Patrinos GP, Anagnou N, Miller W, Wajcman H. HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server. Human Mutation. 19: 225-33. PMID 11857738 DOI: 10.1002/Humu.10044 |
0.372 |
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| 2002 |
Kurihara LJ, Semenova E, Miller W, Ingram RS, Guan XJ, Tilghman SM. Candidate genes required for embryonic development: a comparative analysis of distal mouse chromosome 14 and human chromosome 13q22. Genomics. 79: 154-61. PMID 11829485 DOI: 10.1006/Geno.2002.6692 |
0.365 |
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| 2002 |
Sumiyama K, Irvine SQ, Stock DW, Weiss KM, Kawasaki K, Shimizu N, Shashikant CS, Miller W, Ruddle FH. Genomic structure and functional control of the Dlx3-7 bigene cluster. Proceedings of the National Academy of Sciences of the United States of America. 99: 780-5. PMID 11792834 DOI: 10.1073/Pnas.012584999 |
0.437 |
|
| 2002 |
DeSilva U, Elnitski L, Idol JR, Doyle JL, Gan W, Thomas JW, Schwartz S, Dietrich NL, Beckstrom-Sternberg SM, McDowell JC, Blakesley RW, Bouffard GG, Thomas PJ, Touchman JW, Miller W, et al. Generation and comparative analysis of approximately 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome. Genome Research. 12: 3-15. PMID 11779826 DOI: 10.1101/Gr.214802 |
0.507 |
|
| 2001 |
Chiaromonte F, Yang S, Elnitski L, Yap VB, Miller W, Hardison RC. Association between divergence and interspersed repeats in mammalian noncoding genomic DNA Proceedings of the National Academy of Sciences of the United States of America. 98: 14503-14508. PMID 11717405 DOI: 10.1073/Pnas.251423898 |
0.464 |
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| 2001 |
McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S, Ali J, Dante M, Du F, Hou S, Layman D, Leonard S, Nguyen C, Scott K, ... ... Miller W, et al. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 Nature. 413: 852-856. PMID 11677609 DOI: 10.1038/35101614 |
0.686 |
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| 2001 |
Hardison RC, Chui DHK, Riemer C, Giardine B, Lehväslaiho H, Wajcman H, Miller W. Databases of human hemoglobin variants and other resources at the globin gene server Hemoglobin. 25: 183-193. PMID 11480780 DOI: 10.1081/Hem-100104027 |
0.346 |
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| 2001 |
Miller W. Comparison of genomic DNA sequences: solved and unsolved problems. Bioinformatics (Oxford, England). 17: 391-7. PMID 11331233 DOI: 10.1093/Bioinformatics/17.5.391 |
0.542 |
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| 2001 |
Shiraishi T, Druck T, Mimori K, Flomenberg J, Berk L, Alder H, Miller W, Huebner K, Croce CM. Sequence conservation at human and mouse orthologous common fragile regions, FRA3B/FHIT and Fra14A2/Fhit. Proceedings of the National Academy of Sciences of the United States of America. 98: 5722-7. PMID 11320209 DOI: 10.1073/Pnas.091095898 |
0.441 |
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| 2001 |
Molete JM, Petrykowska H, Bouhassira EE, Feng YQ, Miller W, Hardison RC. Sequences flanking hypersensitive sites of the beta-globin locus control region are required for synergistic enhancement. Molecular and Cellular Biology. 21: 2969-80. PMID 11287603 DOI: 10.1128/Mcb.21.9.2969-2980.2001 |
0.393 |
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| 2001 |
Wilson MD, Riemer C, Martindale DW, Schnupf P, Boright AP, Cheung TL, Hardy DM, Schwartz S, Scherer SW, Tsui LC, Miller W, Koop BF. Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5 Nucleic Acids Research. 29: 1352-1365. PMID 11239002 DOI: 10.1093/Nar/29.6.1352 |
0.468 |
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| 2001 |
Flint J, Tufarelli C, Peden J, Clark K, Daniels RJ, Hardison R, Miller W, Philipsen S, Tan-Un KC, McMorrow T, Frampton J, Alter BP, Frischauf AM, Higgs DR. Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the α globin cluster Human Molecular Genetics. 10: 371-382. PMID 11157800 DOI: 10.1093/Hmg/10.4.371 |
0.333 |
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| 2000 |
Wiehe T, Guigó R, Miller W. Genome sequence comparisons: hurdles in the fast lane to functional genomics Briefings in Bioinformatics. 1: 381-388. PMID 11465055 DOI: 10.1093/Bib/1.4.381 |
0.579 |
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| 2000 |
Doyle JL, DeSilva U, Miller W, Green ED. Divergent human and mouse orthologs of a novel gene (WBSCR15/Wbscr15) reside within the genomic interval commonly deleted in Williams syndrome. Cytogenetics and Cell Genetics. 90: 285-90. PMID 11124535 DOI: 10.1159/000056790 |
0.516 |
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| 2000 |
McClelland M, Florea L, Sanderson K, Clifton SW, Parkhill J, Churcher C, Dougan G, Wilson RK, Miller W. Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. Nucleic Acids Research. 28: 4974-86. PMID 11121489 DOI: 10.1093/Nar/28.24.4974 |
0.755 |
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| 2000 |
Elnitski L, Li J, Noguchi CT, Miller W, Hardison R. A negative cis-element regulates the level of enhancement by hypersensitive site 2 of the beta-globin locus control region. The Journal of Biological Chemistry. 276: 6289-98. PMID 11092897 DOI: 10.1074/Jbc.M009624200 |
0.317 |
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| 2000 |
Onyango P, Miller W, Lehoczky J, Leung CT, Birren B, Wheelan S, Dewar K, Feinberg AP. Sequence and comparative analysis of the mouse 1-megabase region orthologous to the human 11p15 imprinted domain. Genome Research. 10: 1697-710. PMID 11076855 DOI: 10.1101/Gr.161800 |
0.535 |
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| 2000 |
Florea L, Riemer C, Schwartz S, Zhang Z, Stojanovic N, Miller W, McClelland M. Web-based visualization tools for bacterial genome alignments Nucleic Acids Research. 28: 3486-3496. PMID 10982867 DOI: 10.1093/Nar/28.18.3486 |
0.75 |
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| 2000 |
Endrizzi MG, Hadinoto V, Growney JD, Miller W, Dietrich WF. Genomic sequence analysis of the mouse Naip gene array. Genome Research. 10: 1095-102. PMID 10958627 DOI: 10.1101/Gr.10.8.1095 |
0.482 |
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| 2000 |
Berman P, Zhang Z, Wolf YI, Koonin EV, Miller W. Winnowing sequences from a database search. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 7: 293-302. PMID 10890403 DOI: 10.1089/10665270050081531 |
0.383 |
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| 2000 |
Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 7: 203-14. PMID 10890397 DOI: 10.1089/10665270050081478 |
0.345 |
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| 2000 |
Yu CY, Yang Z, Blanchong CA, Miller W. The human and mouse MHC class III region: a parade of 21 genes at the centromeric segment Immunology Today. 21: 320-328. PMID 10871871 DOI: 10.1016/S0167-5699(00)01664-9 |
0.505 |
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| 2000 |
Mallon AM, Platzer M, Bate R, Gloeckner G, Botcherby MRM, Nordsiek G, Strivens MA, Kioschis P, Dangel A, Cunningham D, Straw RNA, Weston P, Gilbert M, Fernando S, Goodall K, ... ... Miller W, et al. Comparative genome sequence analysis of the Bpa/Str region in mouse and man Genome Research. 10: 758-775. PMID 10854409 DOI: 10.1101/Gr.10.6.758 |
0.548 |
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| 2000 |
Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W. PipMaker - A web server for aligning two genomic DNA sequences Genome Research. 10: 577-586. PMID 10779500 DOI: 10.1101/Gr.10.4.577 |
0.518 |
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| 2000 |
Loots GG, Locksley RM, Blankespoor CM, Wang ZE, Miller W, Rubin EM, Frazer KA. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science (New York, N.Y.). 288: 136-40. PMID 10753117 DOI: 10.1126/Science.288.5463.136 |
0.443 |
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| 2000 |
Kim CB, Amemiya C, Bailey W, Kawasaki K, Mezey J, Miller W, Minoshima S, Shimizu N, Wagner G, Ruddle F. Hox cluster genomics in the horn shark, Heterodontus francisci. Proceedings of the National Academy of Sciences of the United States of America. 97: 1655-60. PMID 10677514 DOI: 10.1073/Pnas.030539697 |
0.332 |
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| 2000 |
Miller W. So many genomes, so little time. Nature Biotechnology. 18: 148-9. PMID 10657116 DOI: 10.1038/72588 |
0.463 |
|
| 2000 |
Ellsworth RE, Jamison DC, Touchman JW, Chissoe SL, Braden Maduro VV, Bouffard GG, Dietrich NL, Beckstrom-Sternberg SM, Lyer LM, Weintraub LA, Cotton M, Courtney L, Edwards J, Maupin R, Ozersky P, ... ... Miller W, et al. Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes Proceedings of the National Academy of Sciences of the United States of America. 97: 1172-1177. PMID 10655503 DOI: 10.1073/Pnas.97.3.1172 |
0.505 |
|
| 2000 |
Florea L, Li M, Riemer C, Giardine B, Miller W, Hardison R. Validating Computer Programs for Functional Genomics in Gene Regulatory Regions Current Genomics. 1: 11-27. DOI: 10.2174/1389202003351733 |
0.676 |
|
| 1999 |
Zhang Z, Berman P, Wiehe T, Miller W. Post-processing long pairwise alignments Bioinformatics. 15: 1012-1019. PMID 10745991 DOI: 10.1093/Bioinformatics/15.12.1012 |
0.447 |
|
| 1999 |
Liang Y, Wang A, Belyantseva IA, Anderson DW, Probst FJ, Barber TD, Miller W, Touchman JW, Jin L, Sullivan SL, Sellers JR, Camper SA, Lloyd RV, Kachar B, Friedman TB, et al. Characterization of the human and mouse unconventional myosin XV genes responsible for hereditary deafness DFNB3 and shaker 2. Genomics. 61: 243-58. PMID 10552926 DOI: 10.1006/Geno.1999.5976 |
0.377 |
|
| 1999 |
Endrizzi M, Huang S, Scharf JM, Kelter AR, Wirth B, Kunkel LM, Miller W, Dietrich WF. Comparative sequence analysis of the mouse and human Lgn1/SMA interval. Genomics. 60: 137-51. PMID 10486205 DOI: 10.1006/Geno.1999.5910 |
0.531 |
|
| 1999 |
Stojanovic N, Florea L, Riemer C, Gumucio D, Slightom J, Goodman M, Miller W, Hardison R. Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions Nucleic Acids Research. 27: 3899-3910. PMID 10481030 DOI: 10.1093/Nar/27.19.3899 |
0.694 |
|
| 1999 |
Hwang SY, Oh B, Zhang Z, Miller W, Solter D, Knowles BB. The mouse cornichon gene family. Development Genes and Evolution. 209: 120-5. PMID 10022955 DOI: 10.1007/S004270050234 |
0.358 |
|
| 1999 |
Jang W, Hua A, Spilson SV, Miller W, Roe BA, Meisler MH. Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13. Genome Research. 9: 53-61. PMID 9927484 DOI: 10.1101/Gr.9.1.53 |
0.537 |
|
| 1999 |
Miller W. My adventure using computer science on the Genome project Acm Sigbio Newsletter. 19: 15-16. DOI: 10.1145/340358.340390 |
0.397 |
|
| 1998 |
Bouck J, Miller W, Gorrell JH, Muzny D, Gibbs RA. Analysis of the quality and utility of random shotgun sequencing at low redundancies. Genome Research. 8: 1074-84. PMID 9799794 DOI: 10.1101/Gr.8.10.1074 |
0.491 |
|
| 1998 |
Riemer C, ElSherbini A, Stojanovic N, Schwartz S, Kwitkin PB, Miller W, Hardison R. A database of experimental results on globin gene expression Genomics. 53: 325-337. PMID 9799599 DOI: 10.1006/Geno.1998.5524 |
0.395 |
|
| 1998 |
Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Research. 8: 967-74. PMID 9750195 DOI: 10.1101/Gr.8.9.967 |
0.743 |
|
| 1998 |
Zhang Z, Schäffer AA, Miller W, Madden TL, Lipman DJ, Koonin EV, Altschul SF. Protein sequence similarity searches using patterns as seeds Nucleic Acids Research. 26: 3986-3990. PMID 9705509 DOI: 10.1093/Nar/26.17.3986 |
0.359 |
|
| 1998 |
Zhang Z, Berman P, Miller W. Alignments without low-scoring regions. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 197-210. PMID 9672828 DOI: 10.1089/Cmb.1998.5.197 |
0.414 |
|
| 1998 |
Hardison RC, Chui DHK, Riemer CR, Miller W, Carver MFH, Molchanova TP, Efremov GD, Huisman THJ. Access to a Syllabus of Human Hemoglobin Variants (1996) via the world wide web Hemoglobin. 22: 113-127. PMID 9576329 DOI: 10.3109/03630269809092136 |
0.359 |
|
| 1998 |
Li J, Noguchi CT, Miller W, Hardison R, Schechter AN. Multiple regulatory elements in the 5'-flanking sequence of the human ε-globin gene Journal of Biological Chemistry. 273: 10202-10209. PMID 9553070 DOI: 10.1074/Jbc.273.17.10202 |
0.367 |
|
| 1998 |
Hardison R, Riemer C, Chui DHK, Huisman THJ, Miller W. Electronic access to sequence alignments, experimental results, and human mutations as an aid to studying globin gene regulation Genomics. 47: 429-437. PMID 9480762 DOI: 10.1006/Geno.1997.5147 |
0.374 |
|
| 1998 |
Pearson WR, Wood T, Zhang Z, Miller W. Comparison of DNA sequences with protein sequences. Genomics. 46: 24-36. PMID 9403055 DOI: 10.1006/Geno.1997.4995 |
0.477 |
|
| 1998 |
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D. Gapped blast and psi-blast: a new generation of protein database search programs Faseb Journal. 12. DOI: 10.1093/Nar/25.17.3389 |
0.341 |
|
| 1997 |
Hardison R, Slightom JL, Gumucio DL, Goodman M, Stojanovic N, Miller W. Locus control regions of mammalian β-globin gene clusters: Combining phylogenetic analyses and experimental results to gain functional insights Gene. 205: 73-94. PMID 9461381 DOI: 10.1016/S0378-1119(97)00474-5 |
0.427 |
|
| 1997 |
Hardison RC, Oeltjen J, Miller W. Long human mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome Genome Research. 7: 959-966. PMID 9331366 DOI: 10.1101/Gr.7.10.959 |
0.548 |
|
| 1997 |
Oeltjen JC, Malley TM, Muzny DM, Miller W, Gibbs RA, Belmont JW. Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains Genome Research. 7: 315-329. PMID 9110171 DOI: 10.1101/Gr.7.4.315 |
0.503 |
|
| 1997 |
Chao KM, Zhang J, Ostell J, Miller W. A tool for aligning very similar DNA sequences. Computer Applications in the Biosciences : Cabios. 13: 75-80. PMID 9088712 DOI: 10.1093/Bioinformatics/13.1.75 |
0.481 |
|
| 1997 |
Slightom JL, Bock JH, Tagle DA, Gumucio DL, Goodman M, Stojanovic N, Jackson J, Miller W, Hardison R. The complete sequences of the galago and rabbit beta-globin locus control regions: extended sequence and functional conservation outside the cores of DNase hypersensitive sites. Genomics. 39: 90-4. PMID 9027490 DOI: 10.1006/Geno.1996.4458 |
0.458 |
|
| 1997 |
Myers G, Selznick S, Zhang Z, Miller W. Progressive multiple alignment with constraints. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 3: 563-72. PMID 9018604 DOI: 10.1089/Cmb.1996.3.563 |
0.388 |
|
| 1997 |
Shelton DA, Stegman L, Hardison R, Miller W, Bock JH, Slightom JL, Goodman M, Gumucio DL. Phylogenetic footprinting of hypersensitive site 3 of the β-globin locus control region Blood. 89: 3457-3469. DOI: 10.1182/Blood.V89.9.3457 |
0.344 |
|
| 1996 |
Jackson JD, Miller W, Hardison RC. Sequences within and flanking hypersensitive sites 3 and 2 of the beta-globin locus control region required for synergistic versus additive interaction with the epsilon-globin gene promoter. Nucleic Acids Research. 24: 4327-35. PMID 8932390 DOI: 10.1093/Nar/24.21.4327 |
0.377 |
|
| 1996 |
Jackson JD, Petrykowska H, Philipsen S, Miller W, Hardison R. Role of DNA sequences outside the cores of DNase hypersensitive sites (HSs) in functions of the beta-globin locus control region. Domain opening and synergism between HS2 and HS3. The Journal of Biological Chemistry. 271: 11871-8. PMID 8662652 DOI: 10.1074/Jbc.271.20.11871 |
0.382 |
|
| 1996 |
Fürer M, Miller W. Alignment-To-Alignment Editing With “Move Gap” Operations International Journal of Foundations of Computer Science. 7: 23-41. DOI: 10.1142/S012905419600004X |
0.355 |
|
| 1996 |
Zhang Z, He B, Miller W. Local multiple alignment via subgraph enumeration Discrete Applied Mathematics. 71: 337-365. DOI: 10.1016/S0166-218X(96)00072-8 |
0.32 |
|
| 1995 |
Miller W, Boguski M. A note about computing all local alignments. Computer Applications in the Biosciences : Cabios. 10: 455-6. PMID 7804880 DOI: 10.1093/Bioinformatics/10.4.455 |
0.32 |
|
| 1995 |
Chao KM, Zhang J, Ostell J, Miller W. A local alignment tool for very long DNA sequences. Computer Applications in the Biosciences : Cabios. 11: 147-53. PMID 7620986 DOI: 10.1093/Bioinformatics/11.2.147 |
0.413 |
|
| 1995 |
Chao K-, Miller W. Linear-space algorithms that build local alignments from fragments Algorithmica. 13: 106-134. DOI: 10.1007/Bf01188583 |
0.321 |
|
| 1994 |
Chao KM, Hardison RC, Miller W. Recent developments in linear-space alignment methods: a survey Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 1: 271-291. PMID 8790471 DOI: 10.1089/Cmb.1994.1.271 |
0.424 |
|
| 1994 |
Zhang Z, Raghavachari B, Hardison RC, Miller W. Chaining multiple-alignment blocks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 1: 217-26. PMID 8790466 DOI: 10.1089/Cmb.1994.1.217 |
0.349 |
|
| 1994 |
Miller W, Boguski M, Raghavachari B, Zhang Z, Hardison RC. Constructing aligned sequence blocks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 1: 51-64. PMID 8790453 DOI: 10.1089/Cmb.1994.1.51 |
0.386 |
|
| 1994 |
Hardison R, Chao KM, Adamkiewicz M, Price D, Jackson J, Zeigler T, Stojanovic N, Miller W. Positive and negative regulatory elements of the rabbit embryonic epsilon-globin gene revealed by an improved multiple alignment program and functional analysis. Dna Sequence : the Journal of Dna Sequencing and Mapping. 4: 163-76. PMID 8161819 DOI: 10.3109/10425179309015629 |
0.46 |
|
| 1994 |
Hardison R, Chao KM, Schwartz S, Stojanovic N, Ganetsky M, Miller W. Globin gene server: a prototype E-mail database server featuring extensive multiple alignments and data compilation for electronic genetic analysis. Genomics. 21: 344-53. PMID 8088828 DOI: 10.1006/Geno.1994.1275 |
0.458 |
|
| 1993 |
Miller W. Building multiple alignments from pairwise alignments. Computer Applications in the Biosciences : Cabios. 9: 169-76. PMID 8481819 DOI: 10.1093/Bioinformatics/9.2.169 |
0.417 |
|
| 1993 |
Hardison R, Xu J, Jackson J, Mansberger J, Selifonova O, Grotch B, Biesecker J, Petrykowska H, Miller W. Comparative analysis of the locus control region of the rabbit beta-like gene cluster: HS3 increases transient expression of an embryonic epsilon-globin gene. Nucleic Acids Research. 21: 1265-72. PMID 8464710 DOI: 10.1093/Nar/21.5.1265 |
0.402 |
|
| 1993 |
Chao KM, Hardison RC, Miller W. Locating well-conserved regions within a pairwise alignment Bioinformatics. 9: 387-396. PMID 8402204 DOI: 10.1093/Bioinformatics/9.4.387 |
0.428 |
|
| 1993 |
Hardison R, Miller W. Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters. Molecular Biology and Evolution. 10: 73-102. PMID 8383794 DOI: 10.1093/Oxfordjournals.Molbev.A039991 |
0.395 |
|
| 1993 |
CHAO K, HARDISON R, MILLER W. Constrained sequence alignment Bulletin of Mathematical Biology. 55: 503-524. DOI: 10.1016/S0092-8240(05)80237-X |
0.332 |
|
| 1992 |
Huang X, Miller W, Schwartz S, Hardison RC. Parallelization of a local similarity algorithm Bioinformatics. 8: 155-165. PMID 1591611 DOI: 10.1093/Bioinformatics/8.2.155 |
0.412 |
|
| 1992 |
Pearson WR, Miller W. Dynamic programming algorithms for biological sequence comparison. Methods in Enzymology. 210: 575-601. PMID 1584052 DOI: 10.1016/0076-6879(92)10029-D |
0.383 |
|
| 1992 |
Price DK, Ayres JA, Pasqualone D, Cabell CH, Miller W, Hardison RC. The 5′ ends of LINE1 repeats in rabbit DNA define subfamilies and reveal a short sequence conserved between rabbits and humans Genomics. 14: 320-331. PMID 1427848 DOI: 10.1016/S0888-7543(05)80222-8 |
0.448 |
|
| 1992 |
Chao KM, Pearson WR, Miller W. Aligning two sequences within a specified diagonal band. Computer Applications in the Biosciences : Cabios. 8: 481-7. PMID 1422882 DOI: 10.1093/Bioinformatics/8.5.481 |
0.342 |
|
| 1991 |
Rudd KE, Miller W, Werner C, Ostell J, Tolstoshev C, Satterfield SG. Mapping sequenced E.coli genes by computer: software, strategies and examples. Nucleic Acids Research. 19: 637-47. PMID 2011534 DOI: 10.1093/Nar/19.3.637 |
0.411 |
|
| 1991 |
Hardison R, Krane D, Vandenbergh D, Cheng JF, Mansberger J, Taddie J, Schwartz S, Huang X, Miller W. Sequence and comparative analysis of the rabbit α-like globin gene cluster reveals a rapid mode of evolution in a G + C-rich region of mammalian genomes Journal of Molecular Biology. 222: 233-249. PMID 1960725 DOI: 10.1016/0022-2836(91)90209-O |
0.44 |
|
| 1991 |
Schwartz S, Miller W, Yang Cm, Hardison RC. Software tools for analyzing pairwise alignments of long sequences Nucleic Acids Research. 19: 4663-4667. PMID 1891357 DOI: 10.1093/Nar/19.17.4663 |
0.513 |
|
| 1990 |
Huang X, Hardison RC, Miller W. A space-efficient algorithm for local similarities Bioinformatics. 6: 373-381. PMID 2257499 DOI: 10.1093/Bioinformatics/6.4.373 |
0.408 |
|
| 1990 |
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of Molecular Biology. 215: 403-10. PMID 2231712 DOI: 10.1016/S0022-2836(05)80360-2 |
0.318 |
|
| 1990 |
Miller W, Ostell J, Rudd KE. An algorithm for searching restriction maps. Computer Applications in the Biosciences : Cabios. 6: 247-52. PMID 2207749 DOI: 10.1093/Bioinformatics/6.3.247 |
0.318 |
|
| 1990 |
Rudd KE, Miller W, Ostell J, Benson DA. Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map. Nucleic Acids Research. 18: 313-21. PMID 2183179 DOI: 10.1093/Nar/18.2.313 |
0.4 |
|
| 1989 |
Myers EW, Miller W. Approximate matching of regular expressions. Bulletin of Mathematical Biology. 51: 5-37. PMID 2706401 DOI: 10.1016/S0092-8240(89)80046-1 |
0.313 |
|
| 1988 |
Miller W, Myers EW. Sequence comparison with concave weighting functions. Bulletin of Mathematical Biology. 50: 97-120. PMID 3207952 DOI: 10.1016/S0092-8240(88)80016-8 |
0.385 |
|
| 1985 |
Miller W, Myers EW. A file comparison program Software: Practice and Experience. 15: 1025-1040. DOI: 10.1002/Spe.4380151102 |
0.323 |
|
| Show low-probability matches. |