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T Kwaku Dayie - Publications

Affiliations: 
Biochemistry University of Maryland, College Park, College Park, MD 
Area:
Biochemistry, General Biophysics, General Biology
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Haslecker R, Pham VV, Glänzer D, Kreutz C, Dayie TK, D'Souza VM. Extending the toolbox for RNA biology with SegModTeX: a polymerase-driven method for site-specific and segmental labeling of RNA. Nature Communications. 14: 8422. PMID 38110450 DOI: 10.1038/s41467-023-44254-3  0.564
2023 Haslecker R, Pham V, Glänzer D, Kreutz C, Dayie T, D'Souza V. Extending the toolbox for RNA biology with SegModTeX: A polymerase-driven method for site-specific and segmental labeling of RNA. Research Square. PMID 37066235 DOI: 10.21203/rs.3.rs-2782805/v1  0.564
2022 Taiwo KM, Nam H, LeBlanc RM, Longhini AP, Dayie TK. Cross-correlated relaxation rates provide facile exchange signature in selectively labeled RNA. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 342: 107245. PMID 35908529 DOI: 10.1016/j.jmr.2022.107245  0.391
2022 Olenginski LT, Becette OB, Beaucage SL, Dayie TK. Synthesis of an Atom-Specifically H/ C-Labeled Uridine Ribonucleoside Phosphoramidite. Current Protocols. 2: e481. PMID 35862131 DOI: 10.1002/cpz1.481  0.479
2022 Olenginski LT, Kasprzak WK, Bergonzo C, Shapiro BA, Dayie TK. Conformational dynamics of the hepatitis B virus pre-genomic RNA on multiple time scales: implications for viral replication. Journal of Molecular Biology. 167633. PMID 35595167 DOI: 10.1016/j.jmb.2022.167633  0.372
2022 Dayie TK, Olenginski LT, Taiwo KM. Isotope Labels Combined with Solution NMR Spectroscopy Make Visible the Invisible Conformations of Small-to-Large RNAs. Chemical Reviews. 122: 9357-9394. PMID 35442658 DOI: 10.1021/acs.chemrev.1c00845  0.591
2022 Taiwo KM, Olenginski LT, Nußbaumer F, Nam H, Hilber S, Kreutz C, Dayie TK. Synthesis of [7-N]-GTPs for RNA structure and dynamics by NMR spectroscopy. Monatshefte Fur Chemie. 153: 293-299. PMID 35400760 DOI: 10.1007/s00706-022-02892-1  0.584
2021 Olenginski LT, Taiwo KM, LeBlanc RM, Dayie TK. Isotope-Labeled RNA Building Blocks for NMR Structure and Dynamics Studies. Molecules (Basel, Switzerland). 26. PMID 34577051 DOI: 10.3390/molecules26185581  0.586
2021 LeBlanc RM, Kasprzak WK, Longhini AP, Olenginski LT, Abulwerdi F, Ginocchio S, Shields B, Nyman J, Svirydava M, Del Vecchio C, Ivanic J, Schneekloth JS, Shapiro BA, Dayie TK, Le Grice SFJ. Structural insights of the conserved "priming loop" of hepatitis B virus pre-genomic RNA. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 34155954 DOI: 10.1080/07391102.2021.1934544  0.371
2021 Olenginski LT, Dayie TK. Quantifying the effects of long-range C-C dipolar coupling on measured relaxation rates in RNA. Journal of Biomolecular Nmr. 75: 203-211. PMID 33914223 DOI: 10.1007/s10858-021-00368-8  0.468
2020 Becette OB, Zong G, Chen B, Taiwo KM, Case DA, Dayie TK. Solution NMR readily reveals distinct structural folds and interactions in doubly C- and F-labeled RNAs. Science Advances. 6. PMID 33028531 DOI: 10.1126/sciadv.abc6572  0.559
2020 Nam H, Becette O, LeBlanc RM, Oh D, Case DA, Dayie TK. Deleterious effects of carbon-carbon dipolar coupling on RNA NMR dynamics. Journal of Biomolecular Nmr. PMID 32363430 DOI: 10.1007/S10858-020-00315-Z  0.409
2019 Becette O, Olenginski LT, Dayie TK. Solid-Phase Chemical Synthesis of Stable Isotope-Labeled RNA to Aid Structure and Dynamics Studies by NMR Spectroscopy. Molecules (Basel, Switzerland). 24. PMID 31557861 DOI: 10.3390/molecules24193476  0.588
2019 Abulwerdi FA, Xu W, Ageeli AA, Yonkunas MJ, Arun G, Nam H, Schneekloth JS, Dayie TK, Spector D, Baird N, Le Grice SFJ. Selective small molecule targeting of a triple helix encoded by the long non-coding RNA, MALAT1. Acs Chemical Biology. PMID 30620551 DOI: 10.1021/Acschembio.8B00807  0.334
2018 LeBlanc RM, Longhini AP, Tugarinov V, Dayie TK. NMR probing of invisible excited states using selectively labeled RNAs. Journal of Biomolecular Nmr. PMID 29858959 DOI: 10.1007/S10858-018-0184-3  0.569
2018 Chen B, Longhini AP, Nußbaumer F, Kreutz C, Dinman J, Dayie TK. Residue and site-specific labeling of CCR5 RNA pseudoknot reveals internal motions that correlate with microRNA binding. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 29412477 DOI: 10.1002/Chem.201705948  0.625
2017 LeBlanc RM, Longhini AP, Le Grice SFJ, Johnson BA, Dayie TK. Combining asymmetric 13C-labeling and isotopic filter/edit NOESY: a novel strategy for rapid and logical RNA resonance assignment. Nucleic Acids Research. 45: e146. PMID 28934505 DOI: 10.1093/nar/gkx591  0.564
2016 Longhini AP, LeBlanc RM, Dayie TK. Chemo-enzymatic labeling for rapid assignment of RNA molecules. Methods (San Diego, Calif.). PMID 27090003 DOI: 10.1016/J.Ymeth.2016.03.015  0.557
2016 Chen B, LeBlanc R, Dayie TK. SAM-II Riboswitch Samples at least Two Conformations in Solution in the Absence of Ligand: Implications for Recognition. Angewandte Chemie (International Ed. in English). PMID 26800479 DOI: 10.1002/Anie.201509997  0.534
2015 Longhini AP, LeBlanc RM, Becette O, Salguero C, Wunderlich CH, Johnson BA, D'Souza VM, Kreutz C, Dayie TK. Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations. Nucleic Acids Research. PMID 26657632 DOI: 10.1093/Nar/Gkv1333  0.566
2015 Le MT, Brown RE, Simon AE, Dayie TK. In Vivo, Large-Scale Preparation of Uniformly (15)N- and Site-Specifically (13)C-Labeled Homogeneous, Recombinant RNA for NMR Studies. Methods in Enzymology. 565: 495-535. PMID 26577743 DOI: 10.1016/Bs.Mie.2015.07.020  0.643
2015 Wunderlich CH, Juen MA, LeBlanc RM, Longhini AP, Dayie TK, Kreutz C. Stable isotope-labeled RNA phosphoramidites to facilitate dynamics by NMR. Methods in Enzymology. 565: 461-94. PMID 26577742 DOI: 10.1016/Bs.Mie.2015.06.013  0.645
2014 Alvarado LJ, Longhini AP, LeBlanc RM, Chen B, Kreutz C, Dayie TK. Chemo-enzymatic synthesis of selectively ¹³C/¹⁵N-labeled RNA for NMR structural and dynamics studies. Methods in Enzymology. 549: 133-62. PMID 25432748 DOI: 10.1016/B978-0-12-801122-5.00007-6  0.642
2014 Luo Y, Sintim HO, Dayie TK. Synthesis of a biotinylated photocleavable nucleotide monophosphate for the preparation of natively folded RNAs. Methods in Enzymology. 549: 115-31. PMID 25432747 DOI: 10.1016/B978-0-12-801122-5.00006-4  0.565
2014 Alvarado LJ, LeBlanc RM, Longhini AP, Keane SC, Jain N, Yildiz ZF, Tolbert BS, D'Souza VM, Summers MF, Kreutz C, Dayie TK. Regio-selective chemical-enzymatic synthesis of pyrimidine nucleotides facilitates RNA structure and dynamics studies. Chembiochem : a European Journal of Chemical Biology. 15: 1573-7. PMID 24954297 DOI: 10.1002/Cbic.201402130  0.615
2014 Luo Y, Chen B, Zhou J, Sintim HO, Dayie TK. E88, a new cyclic-di-GMP class I riboswitch aptamer from Clostridium tetani, has a similar fold to the prototypical class I riboswitch, Vc2, but differentially binds to c-di-GMP analogs. Molecular Biosystems. 10: 384-90. PMID 24430255 DOI: 10.1039/C3Mb70467J  0.409
2014 Alvarado LJ, LeBlanc RM, Longhini AP, Keane SC, Jain N, Yildiz ZF, Tolbert BS, D'Souza VM, Summers MF, Kreutz C, Dayie TK. Back Cover: Regio-Selective Chemical-Enzymatic Synthesis of Pyrimidine Nucleotides Facilitates RNA Structure and Dynamics Studies ({JABT} 30/2014) Chembiochem. 15: 1688-1688. DOI: 10.1002/Cbic.201490040  0.536
2013 Berlin K, Longhini A, Dayie TK, Fushman D. Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface. Journal of Biomolecular Nmr. 57: 333-52. PMID 24170368 DOI: 10.1007/S10858-013-9791-1  0.352
2013 Luo Y, Zhou J, Wang J, Dayie TK, Sintim HO. Selective binding of 2'-F-c-di-GMP to Ct-E88 and Cb-E43, new class I riboswitches from Clostridium tetani and Clostridium botulinum respectively. Molecular Biosystems. 9: 1535-9. PMID 23559271 DOI: 10.1039/C3Mb25560C  0.33
2012 Nakayama S, Luo Y, Zhou J, Dayie TK, Sintim HO. Nanomolar fluorescent detection of c-di-GMP using a modular aptamer strategy. Chemical Communications (Cambridge, England). 48: 9059-61. PMID 22854718 DOI: 10.1039/C2Cc34379G  0.309
2012 Chen B, Zuo X, Wang YX, Dayie TK. Multiple conformations of SAM-II riboswitch detected with SAXS and NMR spectroscopy. Nucleic Acids Research. 40: 3117-30. PMID 22139931 DOI: 10.1093/nar/gkr1154  0.434
2012 Thakur CS, Luo Y, Chen B, Eldho NV, Dayie TK. Biomass production of site selective 13C/15N nucleotides using wild type and a transketolase E. coli mutant for labeling RNA for high resolution NMR. Journal of Biomolecular Nmr. 52: 103-14. PMID 22124680 DOI: 10.1007/s10858-011-9586-1  0.592
2012 Thakur CS, Dayie TK. Asymmetry of 13C labeled 3-pyruvate affords improved site specific labeling of RNA for NMR spectroscopy. Journal of Biomolecular Nmr. 52: 65-77. PMID 22089526 DOI: 10.1007/s10858-011-9582-5  0.538
2011 Thakur CS, Dayie TK. Asymmetry of (13)C labeled 3-pyruvate affords improved site specific labeling of RNA for NMR spectroscopy. Journal of Biomolecular Nmr. 51: 505-17. PMID 22038649 DOI: 10.1007/s10858-011-9581-6  0.537
2011 Luo Y, Eldho NV, Sintim HO, Dayie TK. RNAs synthesized using photocleavable biotinylated nucleotides have dramatically improved catalytic efficiency. Nucleic Acids Research. 39: 8559-71. PMID 21742763 DOI: 10.1093/Nar/Gkr464  0.568
2011 Arthur PK, Alvarado LJ, Dayie TK. Expression, purification and analysis of the activity of enzymes from the pentose phosphate pathway. Protein Expression and Purification. 76: 229-37. PMID 21111048 DOI: 10.1016/J.Pep.2010.11.008  0.501
2010 Thakur CS, Sama JN, Jackson ME, Chen B, Dayie TK. Selective 13C labeling of nucleotides for large RNA NMR spectroscopy using an E. coli strain disabled in the TCA cycle. Journal of Biomolecular Nmr. 48: 179-92. PMID 21057854 DOI: 10.1007/S10858-010-9454-4  0.545
2010 Thakur CS, Brown ME, Sama JN, Jackson ME, Dayie TK. Growth of wildtype and mutant E. coli strains in minimal media for optimal production of nucleic acids for preparing labeled nucleotides. Applied Microbiology and Biotechnology. 88: 771-9. PMID 20730533 DOI: 10.1007/S00253-010-2813-Y  0.468
2010 Dayie TK, Thakur CS. Site-specific labeling of nucleotides for making RNA for high resolution NMR studies using an E. coli strain disabled in the oxidative pentose phosphate pathway. Journal of Biomolecular Nmr. 47: 19-31. PMID 20309608 DOI: 10.1007/S10858-010-9405-0  0.528
2010 Chen Y, Eldho NV, Dayie TK, Carey PR. Probing adenine rings and backbone linkages using base specific isotope-edited Raman spectroscopy: application to group II intron ribozyme domain V. Biochemistry. 49: 3427-35. PMID 20225830 DOI: 10.1021/Bi902117W  0.356
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