| Year |
Citation |
Score |
| 2023 |
Chen Z, Greenan GA, Shiozaki M, Liu Y, Skinner WM, Zhao X, Zhao S, Yan R, Yu Z, Lishko PV, Agard DA, Vale RD. In situ cryo-electron tomography reveals the asymmetric architecture of mammalian sperm axonemes. Nature Structural & Molecular Biology. PMID 36593309 DOI: 10.1038/s41594-022-00861-0 |
0.451 |
|
| 2021 |
Verba K, Gupta M, Azumaya C, Moritz M, Pourmal S, Diallo A, Merz G, Jang G, Bouhaddou M, Fossati A, Brilot A, Diwanji D, Hernandez E, Herrera N, Kratochvil H, ... ... Liu Y, et al. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Research Square. PMID 34031651 DOI: 10.21203/rs.3.rs-515215/v1 |
0.777 |
|
| 2021 |
Gupta M, Azumaya CM, Moritz M, Pourmal S, Diallo A, Merz GE, Jang G, Bouhaddou M, Fossati A, Brilot AF, Diwanji D, Hernandez E, Herrera N, Kratochvil HT, Lam VL, ... ... Liu Y, et al. CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. Biorxiv : the Preprint Server For Biology. PMID 34013269 DOI: 10.1101/2021.05.10.443524 |
0.777 |
|
| 2020 |
Gordon DE, Hiatt J, Bouhaddou M, Rezelj VV, Ulferts S, Braberg H, Jureka AS, Obernier K, Guo JZ, Batra J, Kaake RM, Weckstein AR, Owens TW, Gupta M, Pourmal S, ... ... Liu Y, et al. Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms. Science (New York, N.Y.). PMID 33060197 DOI: 10.1126/science.abe9403 |
0.76 |
|
| 2020 |
Wang F, Liu Y, Yu Z, Li S, Feng S, Cheng Y, Agard DA. General and robust covalently linked graphene oxide affinity grids for high-resolution cryo-EM. Proceedings of the National Academy of Sciences of the United States of America. PMID 32913054 DOI: 10.1073/Pnas.2009707117 |
0.481 |
|
| 2020 |
Joshi A, Dai L, Liu Y, Lee J, Ghahhari NM, Segala G, Beebe K, Jenkins LM, Lyons GC, Bernasconi L, Tsai FTF, Agard DA, Neckers L, Picard D. The mitochondrial HSP90 paralog TRAP1 forms an OXPHOS-regulated tetramer and is involved in mitochondrial metabolic homeostasis. Bmc Biology. 18: 10. PMID 31987035 DOI: 10.1186/S12915-020-0740-7 |
0.452 |
|
| 2018 |
Liu Y, Agard DA. Structural Insights into the Regulation Mechanism of HSP90 by Co-chaperone AHA1 Biophysical Journal. 114: 162a. DOI: 10.1016/J.Bpj.2017.11.907 |
0.503 |
|
| 2017 |
Elnatan D, Betegon M, Liu Y, Ramelot T, Kennedy MA, Agard DA. Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1. Elife. 6. PMID 28742020 DOI: 10.7554/Elife.25235 |
0.521 |
|
| 2017 |
Elnatan D, Betegon M, Liu Y, Ramelot T, Kennedy MA, Agard DA. Author response: Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1 Elife. DOI: 10.7554/Elife.25235.016 |
0.443 |
|
| 2016 |
Verba KA, Wang RY, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA. Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Science (New York, N.Y.). 352: 1542-7. PMID 27339980 DOI: 10.1126/Science.Aaf5023 |
0.738 |
|
| 2016 |
Poudel KR, Dong Y, Yu H, Su A, Ho T, Liu Y, Schulten K, Bai J. A time-course of orchestrated endophilin action in sensing, bending, and stabilizing curved membranes. Molecular Biology of the Cell. PMID 27170174 DOI: 10.1091/Mbc.E16-04-0264 |
0.351 |
|
| 2016 |
Liu Y, Singharoy A, Mayne CG, Sengupta A, Raghavachari K, Schulten K, Flood AH. Flexibility Coexists with Shape-persistence in Cyanostar Macrocycles. Journal of the American Chemical Society. PMID 27014837 DOI: 10.1021/Jacs.6B00712 |
0.402 |
|
| 2016 |
Wu H, Liu Y, Wang H, Wu J, Zhu F, Zou P. Label-free and enzyme-free colorimetric detection of microRNA by catalyzed hairpin assembly coupled with hybridization chain reaction. Biosensors & Bioelectronics. 81: 303-308. PMID 26985582 DOI: 10.1016/j.bios.2016.03.013 |
0.378 |
|
| 2015 |
Abazov VM, Abbott B, Acharya BS, Adams M, Adams T, Agnew JP, Alexeev GD, Alkhazov G, Alton A, Askew A, Atkins S, Augsten K, Avila C, Badaud F, Bagby L, ... ... Liu Y, et al. Inclusive Production of the X(4140) State in pp[over ¯] Collisions at D0. Physical Review Letters. 115: 232001. PMID 26684112 DOI: 10.1103/Physrevlett.115.232001 |
0.383 |
|
| 2015 |
Ovchinnikov S, Kim DE, Wang RY, Liu Y, DiMaio F, Baker D. Improved de novo structure prediction in CASP11 by incorporating Co-evolution information into rosetta. Proteins. PMID 26677056 DOI: 10.1002/Prot.24974 |
0.335 |
|
| 2015 |
Liu Y, Yang Y, Gao M, Pan H. Tailoring Thermodynamics and Kinetics for Hydrogen Storage in Complex Hydrides towards Applications. Chemical Record (New York, N.Y.). PMID 26638824 DOI: 10.1002/tcr.201500224 |
0.404 |
|
| 2015 |
Zhang Y, Li W, Dou Y, Zhang J, Jiang G, Miao L, Han G, Liu Y, Li H, Zhang Z. Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca. Plos One. 10: e0144356. PMID 26636322 DOI: 10.1371/journal.pone.0144356 |
0.414 |
|
| 2015 |
Zhang X, Liu Y, Wang K, Li Y, Gao M, Pan H. Ultrafine Nanocrystalline CeO2 @C-Containing NaAlH4 with Fast Kinetics and Good Reversibility for Hydrogen Storage. Chemsuschem. PMID 26632764 DOI: 10.1002/cssc.201501266 |
0.384 |
|
| 2015 |
Zhu F, Jie H, Lian L, Qu LJ, Hou ZC, Zheng JX, Chen SY, Yang N, Liu YP. Avian sarcoma and leukosis virus gag gene in the Anser anser domesticus genome. Genetics and Molecular Research : Gmr. 14: 14379-14386. PMID 26600497 DOI: 10.4238/2015.November.18.1 |
0.402 |
|
| 2015 |
Ma T, Zhou Y, Li X, Zhu F, Cheng Y, Liu Y, Deng Z, Liu T. Genome mining of astaxanthin biosynthetic genes from Sphingomonas sp. ATCC 55669 for heterologous overproduction in Escherichia coli. Biotechnology Journal. PMID 26580858 DOI: 10.1002/Biot.201400827 |
0.397 |
|
| 2015 |
Abazov VM, Abbott B, Acharya BS, Adams M, Adams T, Agnew JP, Alexeev GD, Alkhazov G, Alton A, Askew A, Atkins S, Augsten K, Avila C, Badaud F, Bagby L, ... ... Liu Y, et al. Measurement of the Effective Weak Mixing Angle in pp[over ¯]→Z/γ^{*}→e^{+}e^{-} Events. Physical Review Letters. 115: 041801. PMID 26252676 DOI: 10.1103/Physrevlett.115.041801 |
0.398 |
|
| 2015 |
Singharoy A, Venkatakrishnan B, Liu Y, Mayne CG, Lee S, Chen CH, Zlotnick A, Schulten K, Flood AH. Macromolecular Crystallography for Synthetic Abiological Molecules: Combining xMDFF and PHENIX for Structure Determination of Cyanostar Macrocycles. Journal of the American Chemical Society. 137: 8810-8. PMID 26121416 DOI: 10.1021/Jacs.5B04407 |
0.421 |
|
| 2015 |
Wirth AJ, Liu Y, Prigozhin MB, Schulten K, Gruebele M. Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations. Journal of the American Chemical Society. 137: 7152-9. PMID 25988868 DOI: 10.1021/Jacs.5B02474 |
0.743 |
|
| 2014 |
Cai E, Ge P, Lee SH, Jeyifous O, Wang Y, Liu Y, Wilson KM, Lim SJ, Baird MA, Stone JE, Lee KY, Davidson MW, Chung HJ, Schulten K, Smith AM, et al. Stable small quantum dots for synaptic receptor tracking on live neurons. Angewandte Chemie (International Ed. in English). 53: 12484-8. PMID 25255882 DOI: 10.1002/Anie.201405735 |
0.406 |
|
| 2014 |
Zhou Q, Li J, Yu H, Zhai Y, Gao Z, Liu Y, Pang X, Zhang L, Schulten K, Sun F, Chen C. Molecular insights into the membrane-associated phosphatidylinositol 4-kinase IIα. Nature Communications. 5: 3552. PMID 24675427 DOI: 10.1038/Ncomms4552 |
0.466 |
|
| 2014 |
Wang Y, Liu Y, Deberg HA, Nomura T, Hoffman MT, Rohde PR, Schulten K, Martinac B, Selvin PR. Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel. Elife. 3: e01834. PMID 24550255 DOI: 10.7554/Elife.01834 |
0.413 |
|
| 2014 |
Liu Y, Prigozhin MB, Schulten K, Gruebele M. Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment. Journal of the American Chemical Society. 136: 4265-72. PMID 24437525 DOI: 10.1021/Ja412639U |
0.802 |
|
| 2014 |
Wang Y, Liu Y, DeBerg HA, Nomura T, Hoffman MT, Rohde PR, Schulten K, Martinac B, Selvin PR. Author response: Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel Elife. DOI: 10.7554/Elife.01834.026 |
0.411 |
|
| 2014 |
Liu Y, Stone JE, Cai E, Fei J, Lee SH, Park S, Ha T, Selvin PR, Schulten K. VMD as a Software for Visualization and Quantitative Analysis of Super Resolution Imaging and Single Particle Tracking Biophysical Journal. 106: 202a. DOI: 10.1016/J.Bpj.2013.11.1187 |
0.441 |
|
| 2013 |
Boulos SP, Prigozhin MB, Liu Y, Wirth AJ, Boppart SA, Gruebele M, Murphy CJ. The Gold Nanorod-Biology Interface: From Proteins to Cells to Tissue. Current Physical Chemistry. 3. PMID 24358071 DOI: 10.2174/1877946811303020002 |
0.719 |
|
| 2013 |
Zhang K, Wang L, Liu Y, Chan KY, Pang X, Schulten K, Dong Z, Sun F. Flexible interwoven termini determine the thermal stability of thermosomes. Protein & Cell. 4: 432-44. PMID 23709365 DOI: 10.1007/S13238-013-3026-9 |
0.452 |
|
| 2013 |
Prigozhin MB, Liu Y, Wirth AJ, Kapoor S, Winter R, Schulten K, Gruebele M. Misplaced helix slows down ultrafast pressure-jump protein folding. Proceedings of the National Academy of Sciences of the United States of America. 110: 8087-92. PMID 23620522 DOI: 10.1073/Pnas.1219163110 |
0.744 |
|
| 2013 |
Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker TS, Schulten K, Zheng D, Pang H, Sun F. Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography. Plos Pathogens. 9: e1003132. PMID 23341770 DOI: 10.1371/Journal.Ppat.1003132 |
0.489 |
|
| 2013 |
Lai Y, Diao J, Liu Y, Ishitsuka Y, Su Z, Schulten K, Ha T, Shin YK. Fusion pore formation and expansion induced by Ca2+ and synaptotagmin 1. Proceedings of the National Academy of Sciences of the United States of America. 110: 1333-8. PMID 23300284 DOI: 10.1073/Pnas.1218818110 |
0.437 |
|
| 2013 |
Liu Y, Gruebele M, Schulten K. Fast Protein Refolding Observed in Pressure-Jump Molecular Dynamics Simulation Biophysical Journal. 104: 397a-398a. DOI: 10.1016/J.Bpj.2012.11.2217 |
0.676 |
|
| 2012 |
Liu Y, Strümpfer J, Freddolino PL, Gruebele M, Schulten K. Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations. The Journal of Physical Chemistry Letters. 3: 1117-1123. PMID 22737279 DOI: 10.1021/Jz300017C |
0.761 |
|
| 2012 |
Liu Y, Strumpfer J, Freddolino PL, Gruebele M, Schulten K. Folding Thermodynamics and Kinetics of Lambda-Repressor from All-Atom Molecular Dynamics Simulations Biophysical Journal. 102: 4-7. DOI: 10.1016/J.Bpj.2011.11.2506 |
0.764 |
|
| 2011 |
Liu Y, Hsin J, Kim H, Selvin PR, Schulten K. Extension of a three-helix bundle domain of myosin VI and key role of calmodulins. Biophysical Journal. 100: 2964-73. PMID 21689530 DOI: 10.1016/J.Bpj.2011.05.010 |
0.526 |
|
| 2011 |
Liu Y, Gruebele M, Schulten K. Temperature Dependence of the High-Pressure Denatured State of Lambda Repressor Biophysical Journal. 100: 28a. DOI: 10.1016/J.Bpj.2010.12.356 |
0.647 |
|
| 2010 |
Freddolino PL, Harrison CB, Liu Y, Schulten K. Challenges in protein folding simulations: Timescale, representation, and analysis. Nature Physics. 6: 751-758. PMID 21297873 DOI: 10.1038/Nphys1713 |
0.712 |
|
| 2010 |
Kim H, Hsin J, Liu Y, Selvin PR, Schulten K. Formation of salt bridges mediates internal dimerization of myosin VI medial tail domain. Structure (London, England : 1993). 18: 1443-9. PMID 21070943 DOI: 10.1016/J.Str.2010.09.011 |
0.494 |
|
| 2010 |
Zou X, Liu Y, Chen Z, Cárdenas-Jirón GI, Schulten K. Flow-induced beta-hairpin folding of the glycoprotein Ibalpha beta-switch. Biophysical Journal. 99: 1182-91. PMID 20713002 DOI: 10.1016/J.Bpj.2010.05.035 |
0.442 |
|
| 2010 |
Liu Y, Chapagain PP, Gerstman BS. Stabilization of native and non-native structures by salt bridges in a lattice model of the GCN4 leucine dimer. The Journal of Physical Chemistry. B. 114: 796-803. PMID 20038147 DOI: 10.1021/Jp909872A |
0.348 |
|
| 2010 |
Kim H, Hsin J, Liu Y, Mukherjea M, Safer D, Houdusse A, Sweeney HL, Schulten K, Selvin PR. Single-Molecule and Molecular Dynamics Study of the Dimerization of Myosin VI Medial Tail Domain Biophysical Journal. 98: 724a. DOI: 10.1016/J.Bpj.2009.12.3969 |
0.511 |
|
| 2010 |
Liu Y, Hsin J, Kim H, Houdusse A, Sweeney HL, Selvin PR, Schulten K. Steered Molecular Dynamics Simulation of Unfolding of Myosin VI Proximal Tail Domain Biophysical Journal. 98: 724a. DOI: 10.1016/J.Bpj.2009.12.3966 |
0.526 |
|
| 2008 |
Liu Y, Chapagain PP, Parra JL, Gerstman BS. Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper. The Journal of Chemical Physics. 128: 045106. PMID 18248013 DOI: 10.1063/1.2831513 |
0.408 |
|
| 2008 |
Liu Y, Chapagain PP, Parra JL, Gerstman BS. Publisher’s Note: “Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper” [J. Chem. Phys. 128, 045106 (2008)] The Journal of Chemical Physics. 128: 129901. DOI: 10.1063/1.2898870 |
0.39 |
|
| 2007 |
Chapagain PP, Parra JL, Gerstman BS, Liu Y. Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide. The Journal of Chemical Physics. 127: 075103. PMID 17718634 DOI: 10.1063/1.2757172 |
0.33 |
|
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