| Year |
Citation |
Score |
| 2022 |
Liu CC, Witonsky D, Gosling A, Lee JH, Ringbauer H, Hagan R, Patel N, Stahl R, Novembre J, Aldenderfer M, Warinner C, Di Rienzo A, Jeong C. Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors. Nature Communications. 13: 1203. PMID 35260549 DOI: 10.1038/s41467-022-28827-2 |
0.301 |
|
| 2018 |
Lindo J, Haas R, Hofman C, Apata M, Moraga M, Verdugo RA, Watson JT, Viviano Llave C, Witonsky D, Beall C, Warinner C, Novembre J, Aldenderfer M, Di Rienzo A. The genetic prehistory of the Andean highlands 7000 years BP though European contact. Science Advances. 4: eaau4921. PMID 30417096 DOI: 10.1126/Sciadv.Aau4921 |
0.347 |
|
| 2017 |
Gnecchi-Ruscone GA, Jeong C, De Fanti S, Sarno S, Trancucci M, Gentilini D, Di Blasio AM, Sherpa MG, Sherpa PT, Marinelli G, Di Marcello M, Natali L, Peluzzi D, Pettener D, Di Rienzo A, et al. The genomic landscape of Nepalese Tibeto-Burmans reveals new insights into the recent peopling of Southern Himalayas. Scientific Reports. 7: 15512. PMID 29138459 DOI: 10.1038/s41598-017-15862-z |
0.306 |
|
| 2017 |
Jeong C, Peter BM, Basnyat B, Neupane M, Beall CM, Childs G, Craig SR, Novembre J, Di Rienzo A. A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau. Plos One. 12: e0175885. PMID 28448508 DOI: 10.1371/Journal.Pone.0175885 |
0.339 |
|
| 2016 |
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, ... ... Di Rienzo A, et al. The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature. PMID 27654912 DOI: 10.1038/Nature18964 |
0.623 |
|
| 2016 |
Kariuki SN, Maranville JC, Baxter SS, Jeong C, Nakagome S, Hrusch CL, Witonsky DB, Sperling AI, Di Rienzo A. Mapping Variation in Cellular and Transcriptional Response to 1,25-Dihydroxyvitamin D3 in Peripheral Blood Mononuclear Cells. Plos One. 11: e0159779. PMID 27454520 DOI: 10.1371/Journal.Pone.0159779 |
0.712 |
|
| 2015 |
Nakagome S, Alkorta-Aranburu G, Amato R, Howie B, Peter BM, Hudson RR, Di Rienzo A. Estimating the ages of selection signals from different epochs in human history. Molecular Biology and Evolution. PMID 26545921 DOI: 10.1093/Molbev/Msv256 |
0.713 |
|
| 2015 |
Jeong C, Nakagome S, Di Rienzo A. Deep History of East Asian Populations Revealed Through Genetic Analysis of the Ainu. Genetics. PMID 26500257 DOI: 10.1534/genetics.115.178673 |
0.323 |
|
| 2015 |
Huang C, Haritunians T, Okou DT, Cutler DJ, Zwick ME, Taylor KD, Datta LW, Maranville JC, Liu Z, Ellis S, Chopra P, Alexander JS, Baldassano RN, Cross RK, Dassopoulos T, ... ... Di Rienzo A, et al. Characterization of Genetic Loci That Affect Susceptibility to Inflammatory Bowel Diseases in African Americans. Gastroenterology. PMID 26278503 DOI: 10.1053/J.Gastro.2015.07.065 |
0.703 |
|
| 2015 |
Sudmant PH, Mallick S, Nelson BJ, Hormozdiari F, Krumm N, Huddleston J, Coe BP, Baker C, Nordenfelt S, Bamshad M, Jorde LB, Posukh OL, Sahakyan H, Watkins WS, Yepiskoposyan L, ... ... Di Rienzo A, et al. Global diversity, population stratification, and selection of human copy number variation. Science (New York, N.Y.). PMID 26249230 DOI: 10.1126/Science.Aab3761 |
0.554 |
|
| 2015 |
Muñoz-Fuentes V, Marcet-Ortega M, Alkorta-Aranburu G, Linde Forsberg C, Morrell JM, Manzano-Piedras E, Söderberg A, Daniel K, Villalba A, Toth A, Di Rienzo A, Roig I, Vilà C. Strong artificial selection in domestic mammals did not result in an increased recombination rate. Molecular Biology and Evolution. 32: 510-23. PMID 25414125 DOI: 10.1093/Molbev/Msu322 |
0.687 |
|
| 2014 |
Maranville JC, Di Rienzo A. Combining genetic and nongenetic biomarkers to realize the promise of pharmacogenomics for inflammatory diseases. Pharmacogenomics. 15: 1931-40. PMID 25495413 DOI: 10.2217/Pgs.14.129 |
0.667 |
|
| 2014 |
Jeong C, Di Rienzo A. Adaptations to local environments in modern human populations. Current Opinion in Genetics & Development. 29: 1-8. PMID 25129844 DOI: 10.1016/j.gde.2014.06.011 |
0.325 |
|
| 2014 |
Maranville JC, Micic D, Hanauer SB, Di Rienzo A, Kupfer SS. In vitro sensitivity assays and clinical response to glucocorticoids in patients with inflammatory bowel disease. Journal of Crohn's & Colitis. 8: 1539-47. PMID 25052346 DOI: 10.1016/J.Crohns.2014.06.013 |
0.657 |
|
| 2014 |
Maranville JC, Nanda R, Fleming GF, Skor MN, Di Rienzo A, Conzen SD. Gene expression of peripheral blood cells reveals pathways downstream of glucocorticoid receptor antagonism and nab-paclitaxel treatment. Pharmacogenetics and Genomics. 24: 451-8. PMID 25000515 DOI: 10.1097/Fpc.0000000000000077 |
0.683 |
|
| 2014 |
Jeong C, Alkorta-Aranburu G, Basnyat B, Neupane M, Witonsky DB, Pritchard JK, Beall CM, Di Rienzo A. Admixture facilitates genetic adaptations to high altitude in Tibet. Nature Communications. 5: 3281. PMID 24513612 DOI: 10.1038/Ncomms4281 |
0.736 |
|
| 2014 |
Paré-Brunet L, Glubb D, Evans P, Berenguer-Llergo A, Etheridge AS, Skol AD, Di Rienzo A, Duan S, Gamazon ER, Innocenti F. Discovery and functional assessment of gene variants in the vascular endothelial growth factor pathway. Human Mutation. 35: 227-35. PMID 24186849 DOI: 10.1002/Humu.22475 |
0.304 |
|
| 2013 |
Kupfer SS, Maranville JC, Baxter SS, Huang Y, Di Rienzo A. Comparison of cellular and transcriptional responses to 1,25-dihydroxyvitamin d3 and glucocorticoids in peripheral blood mononuclear cells. Plos One. 8: e76643. PMID 24116131 DOI: 10.1371/Journal.Pone.0076643 |
0.689 |
|
| 2013 |
Maranville JC, Baxter SS, Witonsky DB, Chase MA, Di Rienzo A. Genetic mapping with multiple levels of phenotypic information reveals determinants of lymphocyte glucocorticoid sensitivity. American Journal of Human Genetics. 93: 735-43. PMID 24055111 DOI: 10.1016/J.Ajhg.2013.08.005 |
0.741 |
|
| 2013 |
Lundgrin EL, Janocha AJ, Koch CD, Gebremedhin A, Di Rienzo A, Alkorta-Aranburu G, Brittenham GM, Erzurum SC, Beall CM. Plasma hepcidin of Ethiopian highlanders with steady-state hypoxia. Blood. 122: 1989-91. PMID 24030262 DOI: 10.1182/Blood-2013-03-491068 |
0.613 |
|
| 2013 |
Luca F, Di Rienzo A. Allelic imbalance assays to quantify allele-specific gene expression and transcription factor binding. Methods in Molecular Biology (Clifton, N.J.). 1015: 201-11. PMID 23824858 DOI: 10.1007/978-1-62703-435-7_13 |
0.697 |
|
| 2013 |
Luca F, Maranville JC, Richards AL, Witonsky DB, Stephens M, Di Rienzo A. Genetic, functional and molecular features of glucocorticoid receptor binding. Plos One. 8: e61654. PMID 23637875 DOI: 10.1371/Journal.Pone.0061654 |
0.768 |
|
| 2013 |
Wall JD, Kim SK, Luca F, Carbone L, Mootnick AR, de Jong PJ, Di Rienzo A. Incomplete lineage sorting is common in extant gibbon genera. Plos One. 8: e53682. PMID 23341974 DOI: 10.1371/Journal.Pone.0053682 |
0.605 |
|
| 2013 |
Maranville JC, Baxter SS, Torres JM, Di Rienzo A. Inter-ethnic differences in lymphocyte sensitivity to glucocorticoids reflect variation in transcriptional response. The Pharmacogenomics Journal. 13: 121-9. PMID 22158329 DOI: 10.1038/Tpj.2011.55 |
0.737 |
|
| 2012 |
Alkorta-Aranburu G, Beall CM, Witonsky DB, Gebremedhin A, Pritchard JK, Di Rienzo A. The genetic architecture of adaptations to high altitude in Ethiopia. Plos Genetics. 8: e1003110. PMID 23236293 DOI: 10.1371/Journal.Pgen.1003110 |
0.749 |
|
| 2012 |
Reich D, Patterson N, Campbell D, Tandon A, Mazieres S, Ray N, Parra MV, Rojas W, Duque C, Mesa N, GarcÃa LF, Triana O, Blair S, Maestre A, Dib JC, ... ... Di Rienzo A, et al. Reconstructing Native American population history. Nature. 488: 370-4. PMID 22801491 DOI: 10.1038/Nature11258 |
0.702 |
|
| 2012 |
Maranville JC, Luca F, Stephens M, Di Rienzo A. Mapping gene-environment interactions at regulatory polymorphisms: insights into mechanisms of phenotypic variation. Transcription. 3: 56-62. PMID 22414753 DOI: 10.4161/trns.19497 |
0.79 |
|
| 2012 |
Sun C, Southard C, Huo D, Hernandez RD, Witonsky DB, Olopade OI, Di Rienzo A. SNP discovery, expression and cis-regulatory variation in the UGT2B genes. The Pharmacogenomics Journal. 12: 287-96. PMID 21358749 DOI: 10.1038/Tpj.2011.2 |
0.335 |
|
| 2011 |
Maranville JC, Luca F, Richards AL, Wen X, Witonsky DB, Baxter S, Stephens M, Di Rienzo A. Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes. Plos Genetics. 7: e1002162. PMID 21750684 DOI: 10.1371/Journal.Pgen.1002162 |
0.779 |
|
| 2011 |
Sun C, Huo D, Southard C, Nemesure B, Hennis A, Cristina Leske M, Wu SY, Witonsky DB, Olopade OI, Di Rienzo A. A signature of balancing selection in the region upstream to the human UGT2B4 gene and implications for breast cancer risk. Human Genetics. 130: 767-75. PMID 21660508 DOI: 10.1007/S00439-011-1025-6 |
0.317 |
|
| 2011 |
Luca F, Hudson RR, Witonsky DB, Di Rienzo A. A reduced representation approach to population genetic analyses and applications to human evolution. Genome Research. 21: 1087-98. PMID 21628451 DOI: 10.1101/Gr.119792.110 |
0.66 |
|
| 2011 |
Hancock AM, Witonsky DB, Alkorta-Aranburu G, Beall CM, Gebremedhin A, Sukernik R, Utermann G, Pritchard JK, Coop G, Di Rienzo A. Adaptations to climate-mediated selective pressures in humans. Plos Genetics. 7: e1001375. PMID 21533023 DOI: 10.1371/Journal.Pgen.1001375 |
0.802 |
|
| 2011 |
Sucheston L, Witonsky DB, Hastings D, Yildiz O, Clark VJ, Di Rienzo A, Onel K. Natural selection and functional genetic variation in the p53 pathway. Human Molecular Genetics. 20: 1502-8. PMID 21266458 DOI: 10.1093/Hmg/Ddr028 |
0.348 |
|
| 2011 |
Hancock AM, Clark VJ, Qian Y, Di Rienzo A. Population genetic analysis of the uncoupling proteins supports a role for UCP3 in human cold resistance. Molecular Biology and Evolution. 28: 601-14. PMID 20802238 DOI: 10.1093/Molbev/Msq228 |
0.7 |
|
| 2010 |
Sun C, Southard C, Witonsky DB, Kittler R, Di Rienzo A. Allele-specific down-regulation of RPTOR expression induced by retinoids contributes to climate adaptations. Plos Genetics. 6: e1001178. PMID 21060808 DOI: 10.1371/journal.pgen.1001178 |
0.384 |
|
| 2010 |
Hancock AM, Alkorta-Aranburu G, Witonsky DB, Di Rienzo A. Adaptations to new environments in humans: the role of subtle allele frequency shifts. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 2459-68. PMID 20643735 DOI: 10.1098/Rstb.2010.0032 |
0.809 |
|
| 2010 |
Coop G, Witonsky D, Di Rienzo A, Pritchard JK. Using environmental correlations to identify loci underlying local adaptation. Genetics. 185: 1411-23. PMID 20516501 DOI: 10.1534/Genetics.110.114819 |
0.307 |
|
| 2010 |
Hancock AM, Witonsky DB, Ehler E, Alkorta-Aranburu G, Beall C, Gebremedhin A, Sukernik R, Utermann G, Pritchard J, Coop G, Di Rienzo A. Colloquium paper: human adaptations to diet, subsistence, and ecoregion are due to subtle shifts in allele frequency. Proceedings of the National Academy of Sciences of the United States of America. 107: 8924-30. PMID 20445095 DOI: 10.1073/Pnas.0914625107 |
0.803 |
|
| 2010 |
Luca F, Perry GH, Di Rienzo A. Evolutionary adaptations to dietary changes. Annual Review of Nutrition. 30: 291-314. PMID 20420525 DOI: 10.1146/Annurev-Nutr-080508-141048 |
0.666 |
|
| 2009 |
Novembre J, Di Rienzo A. Spatial patterns of variation due to natural selection in humans. Nature Reviews. Genetics. 10: 745-55. PMID 19823195 DOI: 10.1038/Nrg2632 |
0.332 |
|
| 2009 |
Luca F, Kashyap S, Southard C, Zou M, Witonsky D, Di Rienzo A, Conzen SD. Adaptive variation regulates the expression of the human SGK1 gene in response to stress. Plos Genetics. 5: e1000489. PMID 19461886 DOI: 10.1371/Journal.Pgen.1000489 |
0.728 |
|
| 2008 |
Hancock AM, Witonsky DB, Gordon AS, Eshel G, Pritchard JK, Coop G, Di Rienzo A. Adaptations to climate in candidate genes for common metabolic disorders. Plos Genetics. 4: e32. PMID 18282109 DOI: 10.1371/Journal.Pgen.0040032 |
0.716 |
|
| 2008 |
Pemberton TJ, Mehta NU, Witonsky D, Di Rienzo A, Allayee H, Conti DV, Patel PI. Prevalence of common disease-associated variants in Asian Indians. Bmc Genetics. 9: 13. PMID 18248681 DOI: 10.1186/1471-2156-9-13 |
0.322 |
|
| 2007 |
Clark VJ, Ptak SE, Tiemann I, Qian Y, Coop G, Stone AC, Przeworski M, Arnheim N, Di Rienzo A. Combining sperm typing and linkage disequilibrium analyses reveals differences in selective pressures or recombination rates across human populations. Genetics. 175: 795-804. PMID 17151245 DOI: 10.1534/Genetics.106.064964 |
0.603 |
|
| 2007 |
Seixas S, Suriano G, Carvalho F, Seruca R, Rocha J, Di Rienzo A. Sequence diversity at the proximal 14q32.1 SERPIN subcluster: evidence for natural selection favoring the pseudogenization of SERPINA2. Molecular Biology and Evolution. 24: 587-98. PMID 17135331 DOI: 10.1093/Molbev/Msl187 |
0.308 |
|
| 2006 |
Di Rienzo A. Population genetics models of common diseases. Current Opinion in Genetics & Development. 16: 630-6. PMID 17055247 DOI: 10.1016/j.gde.2006.10.002 |
0.304 |
|
| 2006 |
Thompson EE, Kuttab-Boulos H, Yang L, Roe BA, Di Rienzo A. Sequence diversity and haplotype structure at the human CYP3A cluster. The Pharmacogenomics Journal. 6: 105-14. PMID 16314882 DOI: 10.1038/Sj.Tpj.6500347 |
0.65 |
|
| 2006 |
Maitland ML, Grimsley C, Kuttab-Boulos H, Witonsky D, Kasza KE, Yang L, Roe BA, Di Rienzo A. Comparative genomics analysis of human sequence variation in the UGT1A gene cluster. The Pharmacogenomics Journal. 6: 52-62. PMID 16314881 DOI: 10.1038/sj.tpj.6500351 |
0.376 |
|
| 2005 |
Thompson EE, Kuttab-Boulos H, Krasowski MD, Di Rienzo A. Functional constraints on the constitutive androstane receptor inferred from human sequence variation and cross-species comparisons. Human Genomics. 2: 168-78. PMID 16197734 DOI: 10.1186/1479-7364-2-3-168 |
0.655 |
|
| 2005 |
Di Rienzo A, Hudson RR. An evolutionary framework for common diseases: the ancestral-susceptibility model. Trends in Genetics : Tig. 21: 596-601. PMID 16153740 DOI: 10.1016/j.tig.2005.08.007 |
0.32 |
|
| 2005 |
Clark VJ, Cox NJ, Hammond M, Hanis CL, Di Rienzo A. Haplotype structure and phylogenetic shadowing of a hypervariable region in the CAPN10 gene. Human Genetics. 117: 258-66. PMID 15906097 DOI: 10.1007/S00439-005-1305-0 |
0.39 |
|
| 2005 |
Vander Molen J, Frisse LM, Fullerton SM, Qian Y, Del Bosque-Plata L, Hudson RR, Di Rienzo A. Population genetics of CAPN10 and GPR35: implications for the evolution of type 2 diabetes variants. American Journal of Human Genetics. 76: 548-60. PMID 15696418 DOI: 10.1086/428784 |
0.366 |
|
| 2004 |
Liu W, Innocenti F, Chen PX, Desai A, Grimsley C, Di Rienzo A, Das S, Ratain M. Haplotype analysis of UGT1A1 and UGT1A9 gene polymorphisms related to the glucuronidation of SN-38, the active metabolite of irinotecan. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 22: 2085. PMID 28015676 DOI: 10.1200/jco.2004.22.14_suppl.2085 |
0.317 |
|
| 2004 |
Thompson EE, Kuttab-Boulos H, Witonsky D, Yang L, Roe BA, Di Rienzo A. CYP3A variation and the evolution of salt-sensitivity variants. American Journal of Human Genetics. 75: 1059-69. PMID 15492926 DOI: 10.1086/426406 |
0.671 |
|
| 2004 |
Kreitman M, Di Rienzo A. Balancing claims for balancing selection. Trends in Genetics : Tig. 20: 300-4. PMID 15219394 DOI: 10.1016/j.tig.2004.05.002 |
0.307 |
|
| 2002 |
Fullerton SM, Bartoszewicz A, Ybazeta G, Horikawa Y, Bell GI, Kidd KK, Cox NJ, Hudson RR, Di Rienzo A. Geographic and haplotype structure of candidate type 2 diabetes susceptibility variants at the calpain-10 locus. American Journal of Human Genetics. 70: 1096-106. PMID 11891618 DOI: 10.1086/339930 |
0.78 |
|
| 2002 |
Hamblin MT, Thompson EE, Di Rienzo A. Complex signatures of natural selection at the Duffy blood group locus. American Journal of Human Genetics. 70: 369-83. PMID 11753822 DOI: 10.1086/338628 |
0.611 |
|
| 2001 |
Frisse L, Hudson RR, Bartoszewicz A, Wall JD, Donfack J, Di Rienzo A. Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. American Journal of Human Genetics. 69: 831-43. PMID 11533915 DOI: 10.1086/323612 |
0.317 |
|
| 2001 |
Wu X, Di Rienzo A, Ober C. A population genetics study of single nucleotide polymorphisms in the interleukin 4 receptor alpha (IL4RA) gene. Genes and Immunity. 2: 128-34. PMID 11426321 DOI: 10.1038/sj.gene.6363746 |
0.366 |
|
| 1999 |
Hall D, Ybazeta G, Destro-Bisol G, Petzl-Erler ML, Di Rienzo A. Variability at the uridine diphosphate glucuronosyltransferase 1A1 promoter in human populations and primates. Pharmacogenetics. 9: 591-9. PMID 10591539 |
0.796 |
|
| 1999 |
Krings M, Salem AE, Bauer K, Geisert H, Malek AK, Chaix L, Simon C, Welsby D, Di Rienzo A, Utermann G, Sajantila A, Pääbo S, Stoneking M. mtDNA analysis of Nile River Valley populations: A genetic corridor or a barrier to migration? American Journal of Human Genetics. 64: 1166-76. PMID 10090902 DOI: 10.1086/302314 |
0.646 |
|
| 1998 |
Di Rienzo A, Donnelly P, Toomajian C, Sisk B, Hill A, Petzl-Erler ML, Haines GK, Barch DH. Heterogeneity of microsatellite mutations within and between loci, and implications for human demographic histories. Genetics. 148: 1269-84. PMID 9539441 |
0.697 |
|
| 1995 |
Peterson AC, Di Rienzo A, Lehesjoki AE, de la Chapelle A, Slatkin M, Freimer NB. The distribution of linkage disequilibrium over anonymous genome regions. Human Molecular Genetics. 4: 887-94. PMID 7633449 DOI: 10.1093/Hmg/4.5.887 |
0.313 |
|
| 1993 |
Hasegawa M, Di Rienzo A, Kocher TD, Wilson AC. Toward a more accurate time scale for the human mitochondrial DNA tree. Journal of Molecular Evolution. 37: 347-54. PMID 8308904 DOI: 10.1007/BF00178865 |
0.547 |
|
| 1991 |
Di Rienzo A, Wilson AC. Branching pattern in the evolutionary tree for human mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America. 88: 1597-601. PMID 2000368 DOI: 10.1073/pnas.88.5.1597 |
0.462 |
|
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