| Year |
Citation |
Score |
| 2024 |
Wang B, Chougule K, Jiao Y, Olson A, Kumar V, Gladman N, Huang J, Llaca V, Fengler K, Wei X, Wang L, Wang X, Regulski M, Drenkow J, Gingeras T, et al. High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436. Nar Genomics and Bioinformatics. 6: lqae097. PMID 39131819 DOI: 10.1093/nargab/lqae097 |
0.313 |
|
| 2023 |
Amaral P, Carbonell-Sala S, De La Vega FM, Faial T, Frankish A, Gingeras T, Guigo R, Harrow JL, Hatzigeorgiou AG, Johnson R, Murphy TD, Pertea M, Pruitt KD, Pujar S, Takahashi H, et al. The status of the human gene catalogue. Nature. 622: 41-47. PMID 37794265 DOI: 10.1038/s41586-023-06490-x |
0.321 |
|
| 2023 |
Amaral P, Carbonell-Sala S, Vega FM, Faial T, Frankish A, Gingeras T, Guigo R, Harrow JL, Hatzigeorgiou AG, Johnson R, Murphy TD, Pertea M, Pruitt KD, Pujar S, Takahashi H, et al. The status of the human gene catalogue. Arxiv. PMID 36994150 |
0.351 |
|
| 2023 |
Mattick JS, Amaral PP, Carninci P, Carpenter S, Chang HY, Chen LL, Chen R, Dean C, Dinger ME, Fitzgerald KA, Gingeras TR, Guttman M, Hirose T, Huarte M, Johnson R, et al. Long non-coding RNAs: definitions, functions, challenges and recommendations. Nature Reviews. Molecular Cell Biology. PMID 36596869 DOI: 10.1038/s41580-022-00566-8 |
0.347 |
|
| 2020 |
Xu X, Crow M, Rice BR, Li F, Harris B, Liu L, Demesa-Arevalo E, Lu Z, Wang L, Fox N, Wang X, Drenkow J, Luo A, Char SN, Yang B, ... ... Gingeras TR, et al. Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Developmental Cell. PMID 33400914 DOI: 10.1016/j.devcel.2020.12.015 |
0.322 |
|
| 2020 |
Breschi A, Muñoz-Aguirre M, Wucher V, Davis CA, Garrido-Martín D, Djebali S, Gillis J, Pervouchine DD, Vlasova A, Dobin A, Zaleski C, Drenkow J, Danyko C, Scavelli A, Reverter F, ... ... Gingeras TR, et al. A limited set of transcriptional programs define major cell types. Genome Research. 30: 1047-1059. PMID 32759341 DOI: 10.1101/Gr.263186.120 |
0.345 |
|
| 2020 |
Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, ... ... Gingeras TR, et al. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 583: 699-710. PMID 32728249 DOI: 10.1038/S41586-020-2493-4 |
0.467 |
|
| 2020 |
Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, et al. Perspectives on ENCODE. Nature. 583: 693-698. PMID 32728248 DOI: 10.1038/S41586-020-2449-8 |
0.421 |
|
| 2020 |
Nechooshtan G, Yunusov D, Chang K, Gingeras TR. Processing by RNase 1 forms tRNA halves and distinct Y RNA fragments in the extracellular environment. Nucleic Acids Research. PMID 32609822 DOI: 10.1093/Nar/Gkaa526 |
0.4 |
|
| 2020 |
Wang L, Lu Z, delaBastide M, Van Buren P, Wang X, Ghiban C, Regulski M, Drenkow J, Xu X, Ortiz-Ramirez C, Marco CF, Goodwin S, Dobin A, Birnbaum KD, Jackson DP, ... ... Gingeras TR, et al. Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud. Frontiers in Plant Science. 11: 289. PMID 32296450 DOI: 10.3389/Fpls.2020.00289 |
0.352 |
|
| 2019 |
Rahmanian S, Murad R, Breschi A, Zeng W, Mackiewicz M, Williams B, Davis CA, Roberts B, Meadows S, Moore D, Trout D, Zaleski C, Dobin A, Sei LH, Drenkow J, ... ... Gingeras TR, et al. Dynamics of microRNA expression during mouse prenatal development. Genome Research. PMID 31645363 DOI: 10.1101/Gr.248997.119 |
0.314 |
|
| 2019 |
Zhang XO, Gingeras TR, Weng Z. Genome-wide analysis of polymerase III-transcribed elements suggests cell-type-specific enhancer function. Genome Research. PMID 31413151 DOI: 10.1101/Gr.249789.119 |
0.443 |
|
| 2019 |
Zhang Q, Chao TC, Patil VS, Qin Y, Tiwari SK, Chiou J, Dobin A, Tsai CM, Li Z, Dang J, Gupta S, Urdahl K, Nizet V, Gingeras TR, Gaulton KJ, et al. The long noncoding RNA regulates inflammatory gene expression. The Embo Journal. PMID 30918008 DOI: 10.15252/Embj.2018100041 |
0.389 |
|
| 2018 |
Ballouz S, Dobin A, Gingeras TR, Gillis J. The fractured landscape of RNA-seq alignment: the default in our STARs. Nucleic Acids Research. 46: 5125-5138. PMID 29718481 DOI: 10.1093/Nar/Gky325 |
0.336 |
|
| 2018 |
Li K, Rodosthenous RS, Kashanchi F, Gingeras T, Gould SJ, Kuo LS, Kurre P, Lee H, Leonard JN, Liu H, Lombo TB, Momma S, Nolan JP, Ochocinska MJ, Pegtel DM, et al. Advances, challenges, and opportunities in extracellular RNA biology: insights from the NIH exRNA Strategic Workshop. Jci Insight. 3. PMID 29618663 DOI: 10.1172/Jci.Insight.98942 |
0.304 |
|
| 2017 |
Batut PJ, Gingeras TR. Conserved noncoding transcription and core promoter regulatory code in early development. Elife. 6. PMID 29260710 DOI: 10.7554/Elife.29005 |
0.465 |
|
| 2017 |
Lagarde J, Uszczynska-Ratajczak B, Carbonell S, Pérez-Lluch S, Abad A, Davis C, Gingeras TR, Frankish A, Harrow J, Guigo R, Johnson R. High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing. Nature Genetics. PMID 29106417 DOI: 10.1038/Ng.3988 |
0.477 |
|
| 2017 |
Noguchi S, Arakawa T, Fukuda S, Furuno M, Hasegawa A, Hori F, Ishikawa-Kato S, Kaida K, Kaiho A, Kanamori-Katayama M, Kawashima T, Kojima M, Kubosaki A, Manabe RI, Murata M, ... ... Gingeras T, et al. FANTOM5 CAGE profiles of human and mouse samples. Scientific Data. 4: 170112. PMID 28850106 DOI: 10.1038/Sdata.2017.112 |
0.442 |
|
| 2017 |
Breschi A, Gingeras TR, Guigó R. Comparative transcriptomics in human and mouse. Nature Reviews. Genetics. 18: 425-440. PMID 28479595 DOI: 10.1038/Nrg.2017.19 |
0.384 |
|
| 2017 |
Batut PJ, Gingeras TR. Author response: Conserved noncoding transcription and core promoter regulatory code in early Drosophila development Elife. DOI: 10.7554/Elife.29005.039 |
0.334 |
|
| 2016 |
Breschi A, Djebali S, Gillis J, Pervouchine DD, Dobin A, Davis CA, Gingeras TR, Guigó R. Gene-specific patterns of expression variation across organs and species. Genome Biology. 17: 151. PMID 27391956 DOI: 10.1186/S13059-016-1008-Y |
0.304 |
|
| 2016 |
Dobin A, Gingeras TR. Optimizing RNA-Seq Mapping with STAR. Methods in Molecular Biology (Clifton, N.J.). 1415: 245-62. PMID 27115637 DOI: 10.1007/978-1-4939-3572-7_13 |
0.403 |
|
| 2016 |
Djebali S, Martín BR, Palumbo E, Pervouchine DD, Breschi A, Davis C, Dobin A, Alonso G, Rastrojo A, Aguado B, Gingeras TR, Guigó R. S0103 Recurrent chimeric transcripts in human and mouse Journal of Animal Science. 94: 3-3. DOI: 10.2527/Jas2016.94Supplement43X |
0.312 |
|
| 2016 |
Gingeras TR. S0100 Important lessons from complex genomes Journal of Animal Science. 94: 2-2. DOI: 10.2527/Jas2016.94Supplement42X |
0.308 |
|
| 2015 |
Dobin A, Gingeras TR. Mapping RNA-seq Reads with STAR. Current Protocols in Bioinformatics. 51: 11.14.1-19. PMID 26334920 DOI: 10.1002/0471250953.Bi1114S51 |
0.44 |
|
| 2015 |
Pervouchine DD, Djebali S, Breschi A, Davis CA, Barja PP, Dobin A, Tanzer A, Lagarde J, Zaleski C, See LH, Fastuca M, Drenkow J, Wang H, Bussotti G, Pei B, ... ... Gingeras TR, et al. Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression. Nature Communications. 6: 5903. PMID 25582907 DOI: 10.1038/Ncomms6903 |
0.482 |
|
| 2014 |
Lin S, Lin Y, Nery JR, Urich MA, Breschi A, Davis CA, Dobin A, Zaleski C, Beer MA, Chapman WC, Gingeras TR, Ecker JR, Snyder MP. Comparison of the transcriptional landscapes between human and mouse tissues. Proceedings of the National Academy of Sciences of the United States of America. 111: 17224-9. PMID 25413365 DOI: 10.1073/Pnas.1413624111 |
0.415 |
|
| 2014 |
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, ... ... Gingeras TR, et al. A comparative encyclopedia of DNA elements in the mouse genome. Nature. 515: 355-64. PMID 25409824 DOI: 10.1038/Nature13992 |
0.469 |
|
| 2014 |
Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... Gingeras TR, et al. Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease. Proceedings of the National Academy of Sciences of the United States of America. 111: E3366. PMID 25275169 DOI: 10.1073/Pnas.1410434111 |
0.323 |
|
| 2014 |
Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, ... ... Gingeras TR, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424 |
0.425 |
|
| 2014 |
Fagegaltier D, König A, Gordon A, Lai EC, Gingeras TR, Hannon GJ, Shcherbata HR. A Genome-Wide Survey of Sexually Dimorphic Expression of Drosophila miRNAs Identifies the Steroid Hormone-Induced miRNA let-7 as a Regulator of Sexual Identity. G3 (Bethesda, Md.). PMID 25081982 DOI: 10.1534/g3.114.012203 |
0.704 |
|
| 2014 |
Fagegaltier D, König A, Gordon A, Lai EC, Gingeras TR, Hannon GJ, Shcherbata HR. A genome-wide survey of sexually dimorphic expression of Drosophila miRNAs identifies the steroid hormone-induced miRNA let-7 as a regulator of sexual identity. Genetics. 198: 647-68. PMID 25081570 DOI: 10.1534/Genetics.114.169268 |
0.723 |
|
| 2014 |
Abdelhamid RF, Plessy C, Yamauchi Y, Taoka M, de Hoon M, Gingeras TR, Isobe T, Carninci P. Multiplicity of 5' cap structures present on short RNAs. Plos One. 9: e102895. PMID 25079783 DOI: 10.1371/Journal.Pone.0102895 |
0.39 |
|
| 2014 |
Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, ... ... Gingeras TR, et al. Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6131-8. PMID 24753594 DOI: 10.1073/Pnas.1318948111 |
0.458 |
|
| 2014 |
Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M, Itoh M, Andersson R, Mungall CJ, Meehan TF, Schmeier S, ... ... Gingeras T, et al. A promoter-level mammalian expression atlas. Nature. 507: 462-70. PMID 24670764 DOI: 10.1038/Nature13182 |
0.438 |
|
| 2014 |
Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, ... ... Gingeras TR, et al. Diversity and dynamics of the Drosophila transcriptome. Nature. 512: 393-9. PMID 24670639 DOI: 10.1038/Nature12962 |
0.469 |
|
| 2013 |
Batut P, Gingeras TR. RAMPAGE: promoter activity profiling by paired-end sequencing of 5'-complete cDNAs. Current Protocols in Molecular Biology. 104: Unit 25B.11. PMID 24510412 DOI: 10.1002/0471142727.Mb25B11S104 |
0.493 |
|
| 2013 |
Schlesinger F, Smith AD, Gingeras TR, Hannon GJ, Hodges E. De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements. Genome Research. 23: 1601-14. PMID 23811145 DOI: 10.1101/Gr.157271.113 |
0.675 |
|
| 2013 |
Livyatan I, Harikumar A, Nissim-Rafinia M, Duttagupta R, Gingeras TR, Meshorer E. Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation. Nucleic Acids Research. 41: 6300-15. PMID 23630323 DOI: 10.1093/Nar/Gkt316 |
0.416 |
|
| 2013 |
Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, Jha S, Batut P, Chaisson M, Gingeras TR. STAR: ultrafast universal RNA-seq aligner. Bioinformatics (Oxford, England). 29: 15-21. PMID 23104886 DOI: 10.1093/Bioinformatics/Bts635 |
0.415 |
|
| 2013 |
Batut P, Dobin A, Plessy C, Carninci P, Gingeras TR. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Genome Research. 23: 169-80. PMID 22936248 DOI: 10.1101/Gr.139618.112 |
0.448 |
|
| 2012 |
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, ... ... Gingeras TR, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Research. 22: 1775-89. PMID 22955988 DOI: 10.1101/Gr.132159.111 |
0.462 |
|
| 2012 |
Cheng C, Alexander R, Min R, Leng J, Yip KY, Rozowsky J, Yan KK, Dong X, Djebali S, Ruan Y, Davis CA, Carninci P, Lassman T, Gingeras TR, Guigó R, et al. Understanding transcriptional regulation by integrative analysis of transcription factor binding data. Genome Research. 22: 1658-67. PMID 22955978 DOI: 10.1101/Gr.136838.111 |
0.383 |
|
| 2012 |
Tilgner H, Knowles DG, Johnson R, Davis CA, Chakrabortty S, Djebali S, Curado J, Snyder M, Gingeras TR, Guigó R. Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. Genome Research. 22: 1616-25. PMID 22955974 DOI: 10.1101/Gr.134445.111 |
0.441 |
|
| 2012 |
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, ... ... Gingeras TR, et al. Landscape of transcription in human cells. Nature. 489: 101-8. PMID 22955620 DOI: 10.1038/Nature11233 |
0.61 |
|
| 2012 |
Dong X, Greven MC, Kundaje A, Djebali S, Brown JB, Cheng C, Gingeras TR, Gerstein M, Guigó R, Birney E, Weng Z. Modeling gene expression using chromatin features in various cellular contexts. Genome Biology. 13: R53. PMID 22950368 DOI: 10.1186/Gb-2012-13-9-R53 |
0.427 |
|
| 2012 |
Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biology. 13: 418. PMID 22889292 DOI: 10.1186/Gb-2012-13-8-418 |
0.383 |
|
| 2012 |
Lasa I, Toledo-Arana A, Gingeras TR. An effort to make sense of antisense transcription in bacteria. Rna Biology. 9: 1039-44. PMID 22858676 DOI: 10.4161/Rna.21167 |
0.465 |
|
| 2012 |
Kowalczyk MS, Higgs DR, Gingeras TR. Molecular biology: RNA discrimination. Nature. 482: 310-1. PMID 22337043 DOI: 10.1038/482310A |
0.406 |
|
| 2012 |
Li G, Ruan X, Auerbach RK, Sandhu KS, Zheng M, Wang P, Poh HM, Goh Y, Lim J, Zhang J, Sim HS, Peh SQ, Mulawadi FH, Ong CT, Orlov YL, ... ... Gingeras T, et al. Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell. 148: 84-98. PMID 22265404 DOI: 10.1016/J.Cell.2011.12.014 |
0.396 |
|
| 2012 |
Djebali S, Lagarde J, Kapranov P, Lacroix V, Borel C, Mudge JM, Howald C, Foissac S, Ucla C, Chrast J, Ribeca P, Martin D, Murray RR, Yang X, Ghamsari L, ... ... Gingeras TR, et al. Evidence for transcript networks composed of chimeric RNAs in human cells. Plos One. 7: e28213. PMID 22238572 DOI: 10.1371/Journal.Pone.0028213 |
0.439 |
|
| 2011 |
Lasa I, Toledo-Arana A, Dobin A, Villanueva M, de los Mozos IR, Vergara-Irigaray M, Segura V, Fagegaltier D, Penadés JR, Valle J, Solano C, Gingeras TR. Genome-wide antisense transcription drives mRNA processing in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 108: 20172-7. PMID 22123973 DOI: 10.1073/Pnas.1113521108 |
0.743 |
|
| 2011 |
Deng X, Hiatt JB, Nguyen DK, Ercan S, Sturgill D, Hillier LW, Schlesinger F, Davis CA, Reinke VJ, Gingeras TR, Shendure J, Waterston RH, Oliver B, Lieb JD, Disteche CM. Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster. Nature Genetics. 43: 1179-85. PMID 22019781 DOI: 10.1038/Ng.948 |
0.391 |
|
| 2011 |
Jiang L, Schlesinger F, Davis CA, Zhang Y, Li R, Salit M, Gingeras TR, Oliver B. Synthetic spike-in standards for RNA-seq experiments. Genome Research. 21: 1543-51. PMID 21816910 DOI: 10.1101/Gr.121095.111 |
0.424 |
|
| 2011 |
Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, ... Gingeras TR, et al. The reality of pervasive transcription. Plos Biology. 9: e1000625; discussion. PMID 21765801 DOI: 10.1371/Journal.Pbio.1000625 |
0.459 |
|
| 2011 |
Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, ... ... Gingeras TR, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/Nature09715 |
0.483 |
|
| 2011 |
Cherbas L, Willingham A, Zhang D, Yang L, Zou Y, Eads BD, Carlson JW, Landolin JM, Kapranov P, Dumais J, Samsonova A, Choi JH, Roberts J, Davis CA, Tang H, ... ... Gingeras TR, et al. The transcriptional diversity of 25 Drosophila cell lines. Genome Research. 21: 301-14. PMID 21177962 DOI: 10.1101/Gr.112961.110 |
0.34 |
|
| 2010 |
Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, ... ... Gingeras TR, et al. Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science (New York, N.Y.). 330: 1787-97. PMID 21177974 DOI: 10.1126/Science.1198374 |
0.453 |
|
| 2010 |
Yang A, Zhu Z, Kettenbach A, Kapranov P, McKeon F, Gingeras TR, Struhl K. Genome-wide mapping indicates that p73 and p63 co-occupy target sites and have similar dna-binding profiles in vivo. Plos One. 5: e11572. PMID 20644729 DOI: 10.1371/Journal.Pone.0011572 |
0.309 |
|
| 2010 |
Plessy C, Bertin N, Takahashi H, Simone R, Salimullah M, Lassmann T, Vitezic M, Severin J, Olivarius S, Lazarevic D, Hornig N, Orlando V, Bell I, Gao H, Dumais J, ... ... Gingeras TR, et al. Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan. Nature Methods. 7: 528-34. PMID 20543846 DOI: 10.1038/Nmeth.1470 |
0.459 |
|
| 2010 |
Amid C, Frankish A, Aken B, Ezkurdia I, Kokocinsk F, Gilbert J, White S, Carninci P, Gingeras T, Guigo R, Searle S, Tress ML, Harrow J, Hubbard T. From identification to validation to gene count. Genome Biology. 11: 1-1. DOI: 10.1186/Gb-2010-11-S1-O1 |
0.404 |
|
| 2009 |
Ramani AK, Nelson AC, Kapranov P, Bell I, Gingeras TR, Fraser AG. High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans. Genome Biology. 10: R101. PMID 19778439 DOI: 10.1186/Gb-2009-10-9-R101 |
0.368 |
|
| 2009 |
Gingeras TR. Implications of chimaeric non-co-linear transcripts. Nature. 461: 206-11. PMID 19741701 DOI: 10.1038/Nature08452 |
0.484 |
|
| 2009 |
Makrythanasis P, Kapranov P, Bartoloni L, Reymond A, Deutsch S, Guigó R, Denoeud F, Drenkow J, Rossier C, Ariani F, Capra V, Excoffier L, Renieri A, Gingeras TR, Antonarakis SE. Variation in novel exons (RACEfrags) of the MECP2 gene in Rett syndrome patients and controls. Human Mutation. 30: E866-79. PMID 19562714 DOI: 10.1002/Humu.21073 |
0.39 |
|
| 2009 |
Gingeras T. Missing lincs in the transcriptome. Nature Biotechnology. 27: 346-347. PMID 19352372 DOI: 10.1038/Nbt0409-346 |
0.388 |
|
| 2009 |
Fejes-Toth K, Sotirova V, Sachidanandam R, Assaf G, Hannon GJ, Kapranov P, Foissac S, Willingham AT, Duttagupta R, Dumais E, Gingeras TR. Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs Nature. 457: 1028-1032. PMID 19169241 DOI: 10.1038/Nature07759 |
0.579 |
|
| 2009 |
Zhang X, Lian Z, Padden C, Gerstein MB, Rozowsky J, Snyder M, Gingeras TR, Kapranov P, Weissman SM, Newburger PE. A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. Blood. 113: 2526-34. PMID 19144990 DOI: 10.1182/Blood-2008-06-162164 |
0.419 |
|
| 2008 |
Gingeras TR. Mapping the strand-specific transcriptome of fission yeast. Nature Genetics. 40: 935-6. PMID 18665130 DOI: 10.1038/Ng0808-935 |
0.446 |
|
| 2008 |
Djebali S, Kapranov P, Foissac S, Lagarde J, Reymond A, Ucla C, Wyss C, Drenkow J, Dumais E, Murray RR, Lin C, Szeto D, Denoeud F, Calvo M, Frankish A, ... ... Gingeras TR, et al. Efficient targeted transcript discovery via array-based normalization of RACE libraries. Nature Methods. 5: 629-35. PMID 18500348 DOI: 10.1038/Nmeth.1216 |
0.384 |
|
| 2008 |
Efroni S, Duttagupta R, Cheng J, Dehghani H, Hoeppner DJ, Dash C, Bazett-Jones DP, Le Grice S, McKay RD, Buetow KH, Gingeras TR, Misteli T, Meshorer E. Global transcription in pluripotent embryonic stem cells. Cell Stem Cell. 2: 437-47. PMID 18462694 DOI: 10.1016/J.Stem.2008.03.021 |
0.439 |
|
| 2008 |
Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, ... ... Gingeras T, et al. Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. Plos Biology. 6: e27. PMID 18271625 DOI: 10.1371/Journal.Pbio.0060027 |
0.426 |
|
| 2008 |
Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, ... ... Gingeras TR, et al. Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Research. 18: 393-403. PMID 18258921 DOI: 10.1101/Gr.7080508 |
0.335 |
|
| 2008 |
Rada-Iglesias A, Ameur A, Kapranov P, Enroth S, Komorowski J, Gingeras TR, Wadelius C. Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders. Genome Research. 18: 380-92. PMID 18230803 DOI: 10.1101/Gr.6880908 |
0.416 |
|
| 2008 |
Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Hou CC, Ogawa N, Inwood W, Sementchenko V, Beaton A, ... ... Gingeras T, et al. Correction: Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm (PLoS Biology (2008) 6,2 (e27) DOI: 10.1371/journal.pbio.0060027) Plos Biology. 6: 1600. DOI: 10.1371/Journal.Pbio.0060190 |
0.317 |
|
| 2007 |
Ghosh S, Hirsch HA, Sekinger EA, Kapranov P, Struhl K, Gingeras TR. Differential analysis for high density tiling microarray data. Bmc Bioinformatics. 8: 359. PMID 17892592 DOI: 10.1186/1471-2105-8-359 |
0.436 |
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| 2007 |
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874 |
0.453 |
|
| 2007 |
Washietl S, Pedersen JS, Korbel JO, Stocsits C, Gruber AR, Hackermüller J, Hertel J, Lindemeyer M, Reiche K, Tanzer A, Ucla C, Wyss C, Antonarakis SE, Denoeud F, Lagarde J, ... ... Gingeras TR, et al. Structured RNAs in the ENCODE selected regions of the human genome. Genome Research. 17: 852-64. PMID 17568003 DOI: 10.1101/Gr.5650707 |
0.445 |
|
| 2007 |
Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu Y, Denoeud F, Antonarakis SE, Snyder M, Ruan Y, Wei CL, Gingeras TR, Guigó R, Harrow J, et al. Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution. Genome Research. 17: 839-51. PMID 17568002 DOI: 10.1101/Gr.5586307 |
0.46 |
|
| 2007 |
Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, Drenkow J, Lagarde J, Alioto T, Manzano C, Chrast J, Dike S, Wyss C, Henrichsen CN, Holroyd N, Dickson MC, ... ... Gingeras TR, et al. Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Research. 17: 746-59. PMID 17567994 DOI: 10.1101/Gr.5660607 |
0.484 |
|
| 2007 |
Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB. The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci. Genome Research. 17: 732-45. PMID 17567993 DOI: 10.1101/Gr.5696007 |
0.434 |
|
| 2007 |
Gingeras TR. Origin of phenotypes: genes and transcripts. Genome Research. 17: 682-90. PMID 17567989 DOI: 10.1101/Gr.6525007 |
0.47 |
|
| 2007 |
Kapranov P, Cheng J, Dike S, Nix DA, Duttagupta R, Willingham AT, Stadler PF, Hertel J, Hackermüller J, Hofacker IL, Bell I, Cheung E, Drenkow J, Dumais E, Patel S, ... ... Gingeras TR, et al. RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science (New York, N.Y.). 316: 1484-8. PMID 17510325 DOI: 10.1126/Science.1138341 |
0.442 |
|
| 2007 |
Kapranov P, Willingham AT, Gingeras TR. Genome-wide transcription and the implications for genomic organization. Nature Reviews. Genetics. 8: 413-23. PMID 17486121 DOI: 10.1038/Nrg2083 |
0.435 |
|
| 2006 |
Willingham AT, Dike S, Cheng J, Manak JR, Bell I, Cheung E, Drenkow J, Dumais E, Duttagupta R, Ganesh M, Ghosh S, Helt G, Nix D, Piccolboni A, Sementchenko V, ... ... Gingeras TR, et al. Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes. Cold Spring Harbor Symposia On Quantitative Biology. 71: 101-10. PMID 17480199 DOI: 10.1101/Sqb.2006.71.068 |
0.463 |
|
| 2006 |
Rozowsky J, Wu J, Lian Z, Nagalakshmi U, Korbel JO, Kapranov P, Zheng D, Dyke S, Newburger P, Miller P, Gingeras TR, Weissman S, Gerstein M, Snyder M. Novel transcribed regions in the human genome. Cold Spring Harbor Symposia On Quantitative Biology. 71: 111-6. PMID 17381286 DOI: 10.1101/Sqb.2006.71.054 |
0.385 |
|
| 2006 |
Yang A, Zhu Z, Kapranov P, McKeon F, Church GM, Gingeras TR, Struhl K. Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells. Molecular Cell. 24: 593-602. PMID 17188034 DOI: 10.1016/J.Molcel.2006.10.018 |
0.359 |
|
| 2006 |
Ghosh S, Hirsch HA, Sekinger E, Struhl K, Gingeras TR. Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments. Bmc Bioinformatics. 7: 434. PMID 17022824 DOI: 10.1186/1471-2105-7-434 |
0.365 |
|
| 2006 |
Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF, Wang Q, Bekiranov S, Sementchenko V, Fox EA, Silver PA, ... Gingeras TR, et al. Genome-wide analysis of estrogen receptor binding sites. Nature Genetics. 38: 1289-97. PMID 17013392 DOI: 10.1038/Ng1901 |
0.373 |
|
| 2006 |
Manak JR, Dike S, Sementchenko V, Kapranov P, Biemar F, Long J, Cheng J, Bell I, Ghosh S, Piccolboni A, Gingeras TR. Biological function of unannotated transcription during the early development of Drosophila melanogaster. Nature Genetics. 38: 1151-8. PMID 16951679 DOI: 10.1038/Ng1875 |
0.452 |
|
| 2006 |
Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, et al. EGASP: the human ENCODE Genome Annotation Assessment Project. Genome Biology. 7: S2.1-31. PMID 16925836 DOI: 10.1186/Gb-2006-7-S1-S2 |
0.407 |
|
| 2006 |
Willingham AT, Gingeras TR. TUF love for "junk" DNA. Cell. 125: 1215-20. PMID 16814704 DOI: 10.1016/J.Cell.2006.06.009 |
0.448 |
|
| 2006 |
Gingeras TR. The multitasking genome. Nature Genetics. 38: 608-9. PMID 16736012 DOI: 10.1038/Ng0606-608 |
0.42 |
|
| 2006 |
Schumacher A, Kapranov P, Kaminsky Z, Flanagan JM, Assadzadeh A, Yau P, Virtanen C, Winegarden NA, Cheng J, Gingeras TR, Petronis A. Microarray-based DNA methylation profiling: technology and applications Nucleic Acids Research. 34: 528-542. PMID 16428248 DOI: 10.1093/Nar/Gkj461 |
0.328 |
|
| 2005 |
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, ... ... Gingeras TR, et al. The transcriptional landscape of the mammalian genome. Science (New York, N.Y.). 309: 1559-63. PMID 16141072 DOI: 10.1126/Science.1112014 |
0.451 |
|
| 2005 |
Kapranov P, Drenkow J, Cheng J, Long J, Helt G, Dike S, Gingeras TR. Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays. Genome Research. 15: 987-97. PMID 15998911 DOI: 10.1101/Gr.3455305 |
0.384 |
|
| 2005 |
Jeon Y, Bekiranov S, Karnani N, Kapranov P, Ghosh S, MacAlpine D, Lee C, Hwang DS, Gingeras TR, Dutta A. Temporal profile of replication of human chromosomes. Proceedings of the National Academy of Sciences of the United States of America. 102: 6419-24. PMID 15845769 DOI: 10.1073/Pnas.0405088102 |
0.311 |
|
| 2005 |
Cheng J, Kapranov P, Drenkow J, Dike S, Brubaker S, Patel S, Long J, Stern D, Tammana H, Helt G, Sementchenko V, Piccolboni A, Bekiranov S, Bailey DK, Ganesh M, ... ... Gingeras TR, et al. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. Science (New York, N.Y.). 308: 1149-54. PMID 15790807 DOI: 10.1126/Science.1108625 |
0.484 |
|
| 2005 |
Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ, Gingeras TR, Schreiber SL, Lander ES. Genomic maps and comparative analysis of histone modifications in human and mouse. Cell. 120: 169-81. PMID 15680324 DOI: 10.1016/J.Cell.2005.01.001 |
0.358 |
|
| 2005 |
Gingeras TR, Higuchi R, Kricka LJ, Lo YM, Wittwer CT. Fifty years of molecular (DNA/RNA) diagnostics. Clinical Chemistry. 51: 661-71. PMID 15650028 DOI: 10.1373/Clinchem.2004.045336 |
0.314 |
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| 2004 |
Feingold EA, Good PJ, Guyer MS, Kamholz S, Liefer L, Wetterstrand K, Collins FS, Gingeras TR, Kampa D, Sekinger EA, Cheng J, Hirsch H, Ghosh S, Zhu Z, Patel S, et al. The ENCODE (ENCyclopedia of DNA Elements) Project Science. 306: 636-640. PMID 15499007 DOI: 10.1126/Science.1105136 |
0.38 |
|
| 2004 |
Gingeras TR. RNA reference materials for gene expression studies. Difficult first steps. Clinical Chemistry. 50: 1289-90. PMID 15277341 DOI: 10.1373/Clinchem.2003.030072 |
0.396 |
|
| 2004 |
Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, Cawley S, Drenkow J, Piccolboni A, Bekiranov S, Helt G, Tammana H, Gingeras TR. Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. Genome Research. 14: 331-42. PMID 14993201 DOI: 10.1101/Gr.2094104 |
0.508 |
|
| 2004 |
Cawley S, Bekiranov S, Ng HH, Kapranov P, Sekinger EA, Kampa D, Piccolboni A, Sementchenko V, Cheng J, Williams AJ, Wheeler R, Wong B, Drenkow J, Yamanaka M, Patel S, ... ... Gingeras TR, et al. Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs Cell. 116: 499-509. PMID 14980218 DOI: 10.1016/S0092-8674(04)00127-8 |
0.463 |
|
| 2003 |
Kapranov P, Sementchenko VI, Gingeras TR. Beyond expression profiling: next generation uses of high density oligonucleotide arrays. Briefings in Functional Genomics & Proteomics. 2: 47-56. PMID 15239943 DOI: 10.1093/Bfgp/2.1.47 |
0.486 |
|
| 2002 |
Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL, Fodor SP, Gingeras TR. Large-scale transcriptional activity in chromosomes 21 and 22. Science (New York, N.Y.). 296: 916-9. PMID 11988577 DOI: 10.1126/Science.1068597 |
0.416 |
|
| 2001 |
Rosenow C, Saxena RM, Durst M, Gingeras TR. Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches Nucleic Acids Research. 29. PMID 11713332 DOI: 10.1093/Nar/29.22.E112 |
0.406 |
|
| 2001 |
Ehrt S, Schnappinger D, Bekiranov S, Drenkow J, Shi S, Gingeras TR, Gaasterland T, Schoolnik G, Nathan C. Reprogramming of the macrophage transcriptome in response to interferon-gamma and Mycobacterium tuberculosis: signaling roles of nitric oxide synthase-2 and phagocyte oxidase. The Journal of Experimental Medicine. 194: 1123-40. PMID 11602641 DOI: 10.1084/Jem.194.8.1123 |
0.31 |
|
| 2001 |
Dong S, Wang E, Hsie L, Cao Y, Chen X, Gingeras TR. Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation Genome Research. 11: 1418-1424. PMID 11483583 DOI: 10.1101/Gr.171101 |
0.33 |
|
| 2001 |
Kato-Maeda M, Rhee JT, Gingeras TR, Salamon H, Drenkow J, Smittipat N, Small PM. Comparing Genomes within the Species Mycobacterium tuberculosis Genome Research. 11: 547-554. DOI: 10.1101/Gr166401 |
0.381 |
|
| 2000 |
Salamon H, Kato-Maeda M, Small PM, Drenkow J, Gingeras TR. Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data Genome Research. 10: 2044-2054. PMID 11116098 DOI: 10.1101/Gr.Gr-1529R |
0.4 |
|
| 2000 |
Belcher CE, Drenkow J, Kehoe B, Gingeras TR, McNamara N, Lemjabbar H, Basbaum C, Relman DA. The transcriptional responses of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategies Proceedings of the National Academy of Sciences of the United States of America. 97: 13847-13852. PMID 11087813 DOI: 10.1073/Pnas.230262797 |
0.368 |
|
| 1999 |
Lipshutz RJ, Fodor SPA, Gingeras TR, Lockhart DJ. High density synthetic oligonucleotide arrays Nature Genetics. 21: 20-24. PMID 9915496 DOI: 10.1038/4447 |
0.36 |
|
| 1998 |
Zhu H, Cong JP, Mamtora G, Gingeras T, Shenk T. Cellular gene expression altered by human cytomegalovirus: global monitoring with oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America. 95: 14470-5. PMID 9826724 DOI: 10.1073/Pnas.95.24.14470 |
0.363 |
|
| 1998 |
Gingeras TR, Ghandour G, Wang E, Berno A, Small PM, Drobniewski F, Alland D, Desmond E, Holodniy M, Drenkow J. Simultaneous Genotyping And Species Identification Using Hybridization Pattern Recognition Analysis Of Generic Mycobacterium Dna Arrays Genome Research. 8: 435-448. PMID 9582189 DOI: 10.1101/Gr.8.5.435 |
0.358 |
|
| 1997 |
Winters MA, Shafer RW, Jellinger RA, Mamtora G, Gingeras T, Merigan TC. Human immunodeficiency virus type 1 reverse transcriptase genotype and drug susceptibility changes in infected individuals receiving dideoxyinosine monotherapy for 1 to 2 years. Antimicrobial Agents and Chemotherapy. 41: 757-62. PMID 9087484 DOI: 10.1128/Aac.41.4.757 |
0.319 |
|
| 1994 |
Stillman CA, Linton PJ, Koutz PJ, Decker DJ, Klinman NR, Gingeras TR. Specific immunoglobulin cDNA clones produced from hybridoma cell lines and murine spleen fragment cultures by 3SR amplification. Pcr Methods and Applications. 3: 320-31. PMID 7920236 DOI: 10.1101/Gr.3.6.320 |
0.344 |
|
| 1991 |
Gingeras TR, Prodanovich P, Latimer T, Guatelli JC, Richman DD, Barringer KJ. Use of self-sustained sequence replication amplification reaction to analyze and detect mutations in zidovudine-resistant human immunodeficiency virus Journal of Infectious Diseases. 164: 1066-1074. PMID 1955709 DOI: 10.1093/Infdis/164.6.1066 |
0.334 |
|
| 1991 |
Fahy E, Kwoh DY, Gingeras TR. Self-sustained sequence replication (3SR): an isothermal transcription-based amplification system alternative to PCR. Genome Research. 1: 25-33. PMID 1842917 DOI: 10.1101/Gr.1.1.25 |
0.354 |
|
| 1990 |
Guatelli JC, Gingeras TR, Richman DD. Alternative splice acceptor utilization during human immunodeficiency virus type 1 infection of cultured cells Journal of Virology. 64: 4093-4098. PMID 2384914 DOI: 10.1128/Jvi.64.9.4093-4098.1990 |
0.389 |
|
| 1990 |
Guatelli JC, Whitfield KM, Kwoh DY, Barringer KJ, Richman DD, Gingeras TR. Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication Proceedings of the National Academy of Sciences of the United States of America. 87: 1874-1878. PMID 2308948 DOI: 10.1073/Pnas.87.5.1874 |
0.416 |
|
| 1990 |
Gingeras TR, Richman DD, Kwoh DY, Guatelli JC. Methodologies for in vitro nucleic acid amplification and their applications Veterinary Microbiology. 24: 235-251. PMID 1701942 DOI: 10.1016/0378-1135(90)90174-T |
0.328 |
|
| 1989 |
Kwoh DY, Davis GR, Whitfield KM, Chappelle HL, DiMichele LJ, Gingeras TR. Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format. Proceedings of the National Academy of Sciences of the United States of America. 86: 1173-7. PMID 2919166 DOI: 10.1073/Pnas.86.4.1173 |
0.412 |
|
| 1989 |
Guatelli JC, Gingeras TR, Richman DD. Nucleic acid amplification in vitro: Detection of sequences with low copy numbers and application to diagnosis of human immunodeficiency virus type 1 infection Clinical Microbiology Reviews. 2: 217-226. PMID 2650862 DOI: 10.1128/Cmr.2.2.217 |
0.327 |
|
| 1988 |
Kwoh TJ, Obermiller PS, McCue AW, Kwoh DY, Sullivan SA, Gingeras TR. Introduction and expression of the bacterial PaeR7 restriction endonuclease gene in mouse cells containing the PaeR7 methylase Nucleic Acids Research. 16: 11489-11506. PMID 2850539 DOI: 10.1093/Nar/16.24.11489 |
0.372 |
|
| 1987 |
Tschopp JF, Brust PF, Cregg JM, Stillman CA, Gingeras TR. Expression of the lacZ gene from two methanol-regulated promoters in Pichia pastoris Nucleic Acids Research. 15: 3859-3876. PMID 3108861 DOI: 10.1093/Nar/15.9.3859 |
0.333 |
|
| 1986 |
Kwoh TJ, Kwoh DY, McCue AW, Davis GR, Patrick D, Gingeras TR. Introduction and expression of the bacterial PaeR7 methylase gene in mammalian cells. Proceedings of the National Academy of Sciences of the United States of America. 83: 7713-7. PMID 3463994 DOI: 10.1073/Pnas.83.20.7713 |
0.363 |
|
| 1985 |
Ellis SB, Brust PF, Koutz PJ, Waters AF, Harpold MM, Gingeras TR. Isolation of alcohol oxidase and two other methanol regulatable genes from the yeast Pichia pastoris. Molecular and Cellular Biology. 5: 1111-1121. PMID 3889590 DOI: 10.1128/Mcb.5.5.1111 |
0.378 |
|
| 1985 |
Theriault G, Roy PH, Howard KA, Benner JS, Brooks JE, Waters AF, Gingeras TR. Nucleotide sequence of the PaeR7 restriction/modification system and partial characterization of its protein products. Nucleic Acids Research. 13: 8441-61. PMID 3001639 DOI: 10.1093/Nar/13.23.8441 |
0.343 |
|
| 1983 |
Roberts RJ, Sciaky D, Gelinas RE, Jiang BD, Yen CE, Kelly MM, Bullock PA, Parsons BL, O'Neill KE, Gingeras TR. Information content of the adenovirus-2 genome. Cold Spring Harbor Symposia On Quantitative Biology. 47: 1025-37. PMID 6305570 DOI: 10.1101/Sqb.1983.047.01.116 |
0.305 |
|
| 1983 |
Gingeras TR, Brooks JE. Cloned restriction/modification system from Pseudomonas aeruginosa. Proceedings of the National Academy of Sciences of the United States of America. 80: 402-6. PMID 6300841 DOI: 10.1073/Pnas.80.2.402 |
0.351 |
|
| 1983 |
Brooks JE, Blumenthal RM, Gingeras TR. The isolation and characterization of the Escherichia coli DNA adenine methylase (dam) gene. Nucleic Acids Research. 11: 837-51. PMID 6300769 DOI: 10.1093/Nar/11.3.837 |
0.364 |
|
| 1982 |
Gingeras TR, Rice P, Roberts RJ. A semi-automated method for the reading of nucleic acid sequencing gels Nucleic Acids Research. 10: 103-114. PMID 7063397 DOI: 10.1093/Nar/10.1.103 |
0.31 |
|
| 1982 |
Fitzgerlad GF, Daly C, Brown LR, Gingeras TR. ScrFI: a new sequence–specific endonuclease from Streptococcus cremoris Nucleic Acids Research. 10: 8171-8179. PMID 6298711 DOI: 10.1093/Nar/10.24.8171 |
0.304 |
|
| 1980 |
Gingeras TR, Roberts RJ. Steps toward computer analysis of nucleotide sequences. Science (New York, N.Y.). 209: 1322-8. PMID 6251542 DOI: 10.1126/Science.6251542 |
0.335 |
|
| 1979 |
Gingeras TR, Milazzo JP, Sciaky D, Roberts RJ. Computer programs for the assembly of DNA sequences. Nucleic Acids Research. 7: 529-45. PMID 493154 DOI: 10.1093/Nar/7.2.529 |
0.339 |
|
| 1979 |
Zain S, Gingeras TR, Bullock P, Wong G, Gelinas RE. Determination and analysis of adenovirus-2 DNA sequences which may include signals for late messenger RNA processing Journal of Molecular Biology. 135: 413-433. PMID 318167 DOI: 10.1016/0022-2836(79)90444-3 |
0.444 |
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