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J. Andrew McCammon

Affiliations:

University of California, San Diego, La Jolla, CA

Area:

Statistical mechanics and computational chemistry, with applications to biological systems

Website:

http://www-chem.ucsd.edu/faculty/profiles/mccammon_james_a.html

Google:

"J. Andrew McCammon"

Bio:

http://www.nasonline.org/member-directory/members/43389.html
http://americanhistory.si.edu/collections/comphist/mccammon.htm

Cross-listing: Chemistry Tree

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Parents

John M. Deutch	grad student	1976	Harvard (Chemistry Tree)
(Hydrodynamics of biopolymers)
Martin Karplus	post-doc	1976-1978	Harvard (Chemistry Tree)

Children

Peter Sims	research assistant		UCSD (Chemistry Tree)
Carlos Xavier Hernández	research assistant	2012-2012	UCSD (Chemistry Tree)
William R Cannon	grad student		UCSD (Chemistry Tree)
Regis Pomes	grad student		University of Houston (Chemistry Tree)
Mia A. Rosenfeld	grad student		(Chemistry Tree)
John Tanner	grad student		UCSD (Neurotree)
Roberto Dias Lins	grad student	1995-1999	UCSD (Chemistry Tree)
Kaihsu Tai	grad student	2002	UCSD
Eric David Scheeff	grad student	2003	UCSD (Chemistry Tree)
Jennifer M. Bui	grad student	2005	UCSD
Dennis Stanley Law	grad student	2005	UCSD (Chemistry Tree)
Alexander Luke Perryman	grad student	2005	UCSD (Chemistry Tree)
Julie Schames Pressman	grad student	2005	UCSD (Chemistry Tree)
Grace Yang	grad student	2005	UCSD (Chemistry Tree)
Thuy Linh Dinh-Truong	grad student	2006	UCSD (Chemistry Tree)
John Mongan	grad student	2006	UCSD (Chemistry Tree)
Jessica M. Swanson	grad student	2006	UCSD (Chemistry Tree)
David Cerutti	grad student	2007	UCSD (Chemistry Tree)
Yuhui Cheng	grad student	2007	UCSD
David Minh	grad student	2007	UCSD (Chemistry Tree)
Arneh Babakhani	grad student	2009	UCSD
Jacob Devin Durrant	grad student	2010	UCSD (Chemistry Tree)
Mikolai Fajer	grad student	2011	UCSD (Chemistry Tree)
Patricia M. Bauler	grad student	2012	UCSD
William Sinko	grad student	2012	UCSD (Chemistry Tree)
Paul M. Gasper	grad student	2013	UCSD (Chemistry Tree)
Mehrnoosh Arrar	grad student	2014	UCSD
Patrick G. Blachly	grad student	2014	UCSD
Christopher T. Lee	grad student	2013-2019	UCSD (Chemistry Tree)
Frank L. Brown	post-doc		(Chemistry Tree)
Richard H. Henchman	post-doc		UCSD (Chemistry Tree)
Sara E. Nichols	post-doc		University of California at San Diego, Howard Hughes Medical Institute (Chemistry Tree)
Rebecca C Wade	post-doc
Peter M. Kekenes-Huskey	post-doc	2010-	UCSD (Chemistry Tree)
Scott Hayes Northrup	post-doc	1979-1980	University of Houston (Chemistry Tree)
Jeffry D. Madura	post-doc	1986-1990	University of Houston (Chemistry Tree)
Thanh N. Truong	post-doc	1990-1992	University of Utah (Chemistry Tree)
James M. Briggs	post-doc	1990-1994	University of Houston, TX (Chemistry Tree)
Michael K. Gilson	post-doc	1991-1994	University of Houston (Chemistry Tree)
Wolfgang Weber	post-doc	1997-1999	(Chemistry Tree)
Heather A. Carlson	post-doc	1997-2000	UCSD (Chemistry Tree)
Nathan Baker	post-doc	2001-2002	UCSD (Cell Biology Tree)
Yingkai Zhang	post-doc	2000-2003	UCSD (Chemistry Tree)
Jens E. Nielsen	post-doc	2001-2003	Pharmacology, UCSD
Joachim Dzubiella	post-doc	2004-2006	UCSD (Chemistry Tree)
Cameron Mura	post-doc	2003-2007	UCSD (Chemistry Tree)
Xiaolin Cheng	post-doc	2004-2008	UCSD (Chemistry Tree)
Ilja V. Khavrutskii	post-doc	2007-2009	UCSD (Chemistry Tree)
Giulia Palermo	post-doc	2016-2018	UCSD (Chemistry Tree)
Fiona Lynn Kearns	post-doc	2020-2025	UCSD (Chemistry Tree)
Jung-Hsin Lin	research scientist	2000-2002	UCSD (Chemistry Tree)

Collaborators

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Publications

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Hock MT, Teitgen AE, McCabe KJ, et al. (2023) Multiscale computational modeling of the effects of 2'-deoxy-ATP on cardiac muscle calcium handling. Journal of Applied Physics. 134: 074905
Miao Y, Chang CA, Zhu W, et al. (2023) Editorial: Mechanisms, thermodynamics and kinetics of ligand binding revealed from molecular simulations and machine learning. Frontiers in Molecular Biosciences. 10: 1139471
Laughlin TG, Deep A, Prichard AM, et al. (2022) Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature. 608: 429-435
Ahn SH, Ojha AA, Amaro RE, et al. (2021) Gaussian-Accelerated Molecular Dynamics with the Weighted Ensemble Method: A Hybrid Method Improves Thermodynamic and Kinetic Sampling. Journal of Chemical Theory and Computation. 17: 7938-7951
Sztain T, Ahn SH, Bogetti AT, et al. (2021) A glycan gate controls opening of the SARS-CoV-2 spike protein. Nature Chemistry
Sztain T, Amaro R, McCammon JA. (2021) Elucidation of Cryptic and Allosteric Pockets within the SARS-CoV-2 Main Protease. Journal of Chemical Information and Modeling
Sztain T, Ahn SH, Bogetti AT, et al. (2021) A glycan gate controls opening of the SARS-CoV-2 spike protein. Biorxiv : the Preprint Server For Biology
Seitz C, Casalino L, Konecny R, et al. (2020) Multiscale Simulations Examining Glycan Shield Effects on Drug Binding to Influenza Neuraminidase. Biophysical Journal
McCabe KJ, Aboelkassem Y, Teitgen AE, et al. (2020) Predicting the effects of dATP on cardiac contraction using multiscale modeling of the sarcomere. Archives of Biochemistry and Biophysics. 108582
Misson LE, Mindrebo JT, Davis TD, et al. (2020) Interfacial plasticity facilitates high reaction rate of FAS malonyl-CoA:ACP transacylase, FabD. Proceedings of the National Academy of Sciences of the United States of America