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Craig T. Miller, Ph.D. - Publications

Affiliations: 
University of Oregon, Eugene, OR, United States 
 Molecular and Cell Biology University of California, Berkeley, Berkeley, CA, United States 
Area:
Developmental and evolutionary genetics
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Palominos MF, Muhl V, Richards EJ, Miller CT, Martin CH. Jaw size variation is associated with a novel craniofacial function for galanin receptor 2 in an adaptive radiation of pupfishes. Proceedings. Biological Sciences. 290: 20231686. PMID 37876194 DOI: 10.1098/rspb.2023.1686  0.512
2021 Stepaniak MD, Square TA, Miller CT. Evolved Bmp6 enhancer alleles drive spatial shifts in gene expression during tooth development in sticklebacks. Genetics. 219. PMID 34849839 DOI: 10.1093/genetics/iyab151  0.367
2020 Hulsey CD, Cohen KE, Johanson Z, Karagic N, Meyer A, Miller CT, Sadier A, Summers AP, Fraser GJ. Grand Challenges in Comparative Tooth Biology. Integrative and Comparative Biology. PMID 32533826 DOI: 10.1093/Icb/Icaa038  0.344
2019 Wucherpfennig JI, Miller CT, Kingsley DM. Efficient CRISPR-Cas9 editing of major evolutionary loci in sticklebacks. Evolutionary Ecology Research. 20: 107-132. PMID 34899072  0.334
2018 Cleves PA, Hart JC, Agoglia RM, Jimenez MT, Erickson PA, Gai L, Miller CT. An intronic enhancer of Bmp6 underlies evolved tooth gain in sticklebacks. Plos Genetics. 14: e1007449. PMID 29902209 DOI: 10.1371/Journal.Pgen.1007449  0.791
2018 Erickson PA, Baek J, Hart JC, Cleves PA, Miller CT. Genetic Dissection of a Supergene Implicatesin Craniofacial Evolution of Threespine Sticklebacks. Genetics. PMID 29593029 DOI: 10.1534/Genetics.118.300760  0.785
2017 Miller CT, Hart JC. Sequence-Based Mapping and Genome Editing Reveal Mutations in Stickleback Hps5 Cause Oculocutaneous Albinism and the casper Phenotype. G3 (Bethesda, Md.). PMID 28739598 DOI: 10.1534/G3.117.1125  0.376
2016 Martin CH, Erickson PA, Miller CT. The genetic architecture of novel trophic specialists: higher effect sizes are associated with exceptional oral jaw diversification in a pupfish adaptive radiation. Molecular Ecology. PMID 27873369 DOI: 10.1111/Mec.13935  0.577
2016 Askary A, Smeeton J, Paul S, Schindler S, Braasch I, Ellis NA, Postlethwait J, Miller CT, Crump JG. Ancient origin of lubricated joints in bony vertebrates. Elife. 5. PMID 27434666 DOI: 10.7554/Elife.16415  0.342
2016 Erickson PA, Ellis NA, Miller CT. Microinjection for Transgenesis and Genome Editing in Threespine Sticklebacks. Journal of Visualized Experiments : Jove. PMID 27214565 DOI: 10.3791/54055  0.458
2016 Ellis NA, Miller CT. Dissection and Flat-mounting of the Threespine Stickleback Branchial Skeleton. Journal of Visualized Experiments : Jove. PMID 27213248 DOI: 10.3791/54056  0.45
2016 Ellis NA, Donde NN, Miller CT. Early development and replacement of the stickleback dentition. Journal of Morphology. PMID 27145214 DOI: 10.1002/Jmor.20557  0.372
2016 Erickson PA, Glazer AM, Killingbeck EE, Agoglia RM, Baek J, Carsanaro SM, Lee AM, Cleves PA, Schluter D, Miller CT. Partially repeatable genetic basis of benthic adaptation in threespine sticklebacks. Evolution; International Journal of Organic Evolution. PMID 26947264 DOI: 10.1111/Evo.12897  0.758
2015 Ellis NA, Glazer AM, Donde NN, Cleves PA, Agoglia RM, Miller CT. Distinct developmental genetic mechanisms underlie convergently evolved tooth gain in sticklebacks. Development (Cambridge, England). 142: 2442-51. PMID 26062935 DOI: 10.1242/Dev.124248  0.768
2015 Glazer AM, Killingbeck EE, Mitros T, Rokhsar DS, Miller CT. Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing. G3 (Bethesda, Md.). 5: 1463-72. PMID 26044731 DOI: 10.1534/G3.115.017905  0.369
2015 Erickson PA, Cleves PA, Ellis NA, Schwalbach KT, Hart JC, Miller CT. A 190 base pair, TGF-β responsive tooth and fin enhancer is required for stickleback Bmp6 expression. Developmental Biology. 401: 310-23. PMID 25732776 DOI: 10.1016/J.Ydbio.2015.02.006  0.751
2014 Cleves PA, Ellis NA, Jimenez MT, Nunez SM, Schluter D, Kingsley DM, Miller CT. Evolved tooth gain in sticklebacks is associated with a cis-regulatory allele of Bmp6. Proceedings of the National Academy of Sciences of the United States of America. 111: 13912-7. PMID 25205810 DOI: 10.1073/Pnas.1407567111  0.782
2014 Erickson PA, Glazer AM, Cleves PA, Smith AS, Miller CT. Two developmentally temporal quantitative trait loci underlie convergent evolution of increased branchial bone length in sticklebacks. Proceedings. Biological Sciences / the Royal Society. 281: 20140822. PMID 24966315 DOI: 10.1098/Rspb.2014.0822  0.76
2014 Glazer AM, Cleves PA, Erickson PA, Lam AY, Miller CT. Parallel developmental genetic features underlie stickleback gill raker evolution. Evodevo. 5: 19. PMID 24851181 DOI: 10.1186/2041-9139-5-19  0.776
2014 Miller CT, Glazer AM, Summers BR, Blackman BK, Norman AR, Shapiro MD, Cole BL, Peichel CL, Schluter D, Kingsley DM. Modular skeletal evolution in sticklebacks is controlled by additive and clustered quantitative trait Loci. Genetics. 197: 405-20. PMID 24652999 DOI: 10.1534/Genetics.114.162420  0.454
2012 Jones FC, Grabherr MG, Chan YF, Russell P, Mauceli E, Johnson J, Swofford R, Pirun M, Zody MC, White S, Birney E, Searle S, Schmutz J, Grimwood J, Dickson MC, ... ... Miller CT, et al. The genomic basis of adaptive evolution in threespine sticklebacks. Nature. 484: 55-61. PMID 22481358 DOI: 10.1038/Nature10944  0.393
2008 Albert AY, Sawaya S, Vines TH, Knecht AK, Miller CT, Summers BR, Balabhadra S, Kingsley DM, Schluter D. The genetics of adaptive shape shift in stickleback: pleiotropy and effect size. Evolution; International Journal of Organic Evolution. 62: 76-85. PMID 18005154 DOI: 10.1111/J.1558-5646.2007.00259.X  0.399
2007 Miller CT, Beleza S, Pollen AA, Schluter D, Kittles RA, Shriver MD, Kingsley DM. cis-Regulatory changes in Kit ligand expression and parallel evolution of pigmentation in sticklebacks and humans. Cell. 131: 1179-89. PMID 18083106 DOI: 10.1016/J.Cell.2007.10.055  0.42
2007 Miller CT, Swartz ME, Khuu PA, Walker MB, Eberhart JK, Kimmel CB. mef2ca is required in cranial neural crest to effect Endothelin1 signaling in zebrafish. Developmental Biology. 308: 144-57. PMID 17574232 DOI: 10.1016/J.Ydbio.2007.05.018  0.737
2007 Kimmel CB, Walker MB, Miller CT. Morphing the hyomandibular skeleton in development and evolution. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 609-24. PMID 17358015 DOI: 10.1002/Jez.B.21155  0.734
2007 Walker MB, Miller CT, Swartz ME, Eberhart JK, Kimmel CB. phospholipase C, beta 3 is required for Endothelin1 regulation of pharyngeal arch patterning in zebrafish. Developmental Biology. 304: 194-207. PMID 17239364 DOI: 10.1016/J.Ydbio.2006.12.027  0.734
2006 Walker MB, Miller CT, Coffin Talbot J, Stock DW, Kimmel CB. Zebrafish furin mutants reveal intricacies in regulating Endothelin1 signaling in craniofacial patterning. Developmental Biology. 295: 194-205. PMID 16678149 DOI: 10.1016/J.Ydbio.2006.03.028  0.729
2005 Yan YL, Willoughby J, Liu D, Crump JG, Wilson C, Miller CT, Singer A, Kimmel C, Westerfield M, Postlethwait JH. A pair of Sox: distinct and overlapping functions of zebrafish sox9 co-orthologs in craniofacial and pectoral fin development. Development (Cambridge, England). 132: 1069-83. PMID 15689370 DOI: 10.1242/Dev.01674  0.659
2004 Miller CT, Maves L, Kimmel CB. moz regulates Hox expression and pharyngeal segmental identity in zebrafish. Development (Cambridge, England). 131: 2443-61. PMID 15128673 DOI: 10.1242/Dev.01134  0.657
2003 Miller CT, Yelon D, Stainier DY, Kimmel CB. Two endothelin 1 effectors, hand2 and bapx1, pattern ventral pharyngeal cartilage and the jaw joint. Development (Cambridge, England). 130: 1353-65. PMID 12588851 DOI: 10.1242/Dev.00339  0.629
2003 Kimmel CB, Ullmann B, Walker M, Miller CT, Crump JG. Endothelin 1-mediated regulation of pharyngeal bone development in zebrafish. Development (Cambridge, England). 130: 1339-51. PMID 12588850 DOI: 10.1242/Dev.00338  0.716
2002 Yan YL, Miller CT, Nissen RM, Singer A, Liu D, Kirn A, Draper B, Willoughby J, Morcos PA, Amsterdam A, Chung BC, Westerfield M, Haffter P, Hopkins N, Kimmel C, et al. A zebrafish sox9 gene required for cartilage morphogenesis. Development (Cambridge, England). 129: 5065-79. PMID 12397114  0.618
2001 Kimmel CB, Miller CT, Keynes RJ. Neural crest patterning and the evolution of the jaw. Journal of Anatomy. 199: 105-20. PMID 11523812 DOI: 10.1046/J.1469-7580.2001.19910105.X  0.608
2001 Miller CT, Kimmel CB. Morpholino phenocopies of endothelin 1 (sucker) and other anterior arch class mutations. Genesis (New York, N.Y. : 2000). 30: 186-7. PMID 11477704 DOI: 10.1002/Gene.1061  0.592
2001 Kimmel CB, Miller CT, Moens CB. Specification and morphogenesis of the zebrafish larval head skeleton. Developmental Biology. 233: 239-57. PMID 11336493 DOI: 10.1006/Dbio.2001.0201  0.731
2000 Miller CT, Schilling TF, Lee K, Parker J, Kimmel CB. sucker encodes a zebrafish Endothelin-1 required for ventral pharyngeal arch development. Development (Cambridge, England). 127: 3815-28. PMID 10934026  0.578
1998 Kimmel CB, Miller CT, Kruze G, Ullmann B, BreMiller RA, Larison KD, Snyder HC. The shaping of pharyngeal cartilages during early development of the zebrafish. Developmental Biology. 203: 245-63. PMID 9808777 DOI: 10.1006/Dbio.1998.9016  0.604
1996 Miller C, McDonald J, Francis D. Evolution of Promoter Sequences: Elements of a Canonical Promoter for Prespore Genes of Dictyostelium Journal of Molecular Evolution. 43: 185-193. PMID 8703084 DOI: 10.1007/Bf02338826  0.303
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